Wall clock time and date at job start Wed Apr 1 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00279 * 2 1 4 4 C 1.38237 * 119.99737 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.00263 * 359.95663 * 4 3 2 6 6 C 1.50707 * 119.99795 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46906 * 89.99835 * 6 5 4 8 8 H 1.08994 * 109.47672 * 304.99565 * 7 6 5 9 9 C 1.53005 * 109.47026 * 65.00380 * 7 6 5 10 10 C 1.50702 * 109.46809 * 184.99721 * 7 6 5 11 11 O 1.21279 * 119.99971 * 339.68179 * 10 7 6 12 12 N 1.34775 * 120.00006 * 159.68398 * 10 7 6 13 13 C 1.47161 * 120.71207 * 185.28650 * 12 10 7 14 14 C 1.53892 * 108.03642 * 132.73388 * 13 12 10 15 15 H 1.08993 * 112.09606 * 181.91206 * 14 13 12 16 16 C 1.54553 * 108.36249 * 306.25019 * 14 13 12 17 17 C 1.54824 * 104.74120 * 89.17413 * 16 14 13 18 18 C 1.54544 * 104.74686 * 359.97438 * 17 16 14 19 19 H 1.09004 * 112.67914 * 146.81175 * 18 17 16 20 20 C 1.47168 * 120.71079 * 5.25883 * 12 10 7 21 21 N 1.48301 * 107.20791 * 58.35561 * 14 13 12 22 22 C 1.36937 * 128.07477 * 106.09875 * 21 14 13 23 23 H 1.08005 * 119.99601 * 161.89551 * 22 21 14 24 24 C 1.38809 * 120.00131 * 341.88844 * 22 21 14 25 25 N 1.31618 * 120.00140 * 345.58183 * 24 22 21 26 26 Si 1.86798 * 119.99775 * 165.57621 * 24 22 21 27 27 H 1.48504 * 109.46720 * 180.02562 * 26 24 22 28 28 H 1.48496 * 109.47508 * 300.00326 * 26 24 22 29 29 H 1.48501 * 109.47212 * 60.00338 * 26 24 22 30 30 C 1.38231 * 120.00201 * 0.27571 * 5 4 3 31 31 C 1.38235 * 119.99684 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47148 * 89.99648 * 1 2 3 33 33 H 1.08998 * 109.47401 * 210.00183 * 1 2 3 34 34 H 1.09003 * 109.46965 * 329.99482 * 1 2 3 35 35 H 1.08002 * 119.99647 * 359.97438 * 3 2 1 36 36 H 1.08007 * 119.99431 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.46793 * 330.00169 * 6 5 4 38 38 H 1.09005 * 109.46843 * 209.99753 * 6 5 4 39 39 H 1.09001 * 109.47108 * 174.40012 * 9 7 6 40 40 H 1.09004 * 109.46824 * 294.38877 * 9 7 6 41 41 H 1.08993 * 109.47456 * 54.39470 * 9 7 6 42 42 H 1.08998 * 109.74718 * 13.09933 * 13 12 10 43 43 H 1.09003 * 109.78843 * 252.39299 * 13 12 10 44 44 H 1.09001 * 110.36142 * 208.13805 * 16 14 13 45 45 H 1.08996 * 110.36459 * 330.45546 * 16 14 13 46 46 H 1.08999 * 110.30642 * 241.24035 * 17 16 14 47 47 H 1.09000 * 110.61637 * 118.90659 * 17 16 14 48 48 H 1.09008 * 109.74670 * 346.90123 * 20 12 10 49 49 H 1.08996 * 109.74789 * 107.58139 * 20 12 10 50 50 H 0.97000 * 120.00270 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.00381 * 179.72822 * 30 5 4 52 52 H 1.08007 * 120.00343 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0001 -0.0002 6 6 5.7787 -0.0002 -0.0002 7 6 6.2887 0.0003 1.4423 8 1 5.8542 0.8423 1.9811 9 6 5.8839 -1.3069 2.1268 10 6 7.7906 0.1241 1.4440 11 8 8.4237 -0.1612 0.4497 12 7 8.4303 0.5517 2.5506 13 6 9.8825 0.7889 2.5348 14 6 10.1491 2.1564 3.1885 15 1 11.2080 2.4147 3.1816 16 6 9.2851 3.2167 2.4688 17 6 7.9446 3.2244 3.2434 18 6 8.1272 2.1676 4.3561 19 1 7.5938 2.4245 5.2714 20 6 7.6912 0.7920 3.8003 21 7 9.5945 2.1013 4.5628 22 6 10.2775 2.0052 5.7458 23 1 9.7893 2.2642 6.6737 24 6 11.5972 1.5748 5.7524 25 7 12.1054 0.9942 4.6861 26 14 12.6519 1.8198 7.2745 27 1 14.0121 1.2780 7.0266 28 1 12.7456 3.2691 7.5838 29 1 12.0365 1.1074 8.4230 30 6 3.5805 -1.1972 -0.0050 31 6 2.1981 -1.1972 0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1324 -0.0004 36 1 4.1206 2.1324 -0.0010 37 1 6.1420 0.8897 -0.5142 38 1 6.1420 -0.8904 -0.5137 39 1 6.3307 -1.3504 3.1200 40 1 4.7983 -1.3500 2.2146 41 1 6.2343 -2.1513 1.5334 42 1 10.2434 0.7957 1.5063 43 1 10.3904 0.0061 3.0982 44 1 9.7629 4.1950 2.5222 45 1 9.1203 2.9303 1.4302 46 1 7.1246 2.9418 2.5832 47 1 7.7587 4.2061 3.6791 48 1 6.6200 0.8008 3.5989 49 1 7.9238 0.0091 4.5221 50 1 13.0277 0.6938 4.6905 51 1 4.1204 -2.1326 -0.0092 52 1 1.6581 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029599243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:51 Heat of formation + Delta-G solvation = 9.407580 kcal Electronic energy + Delta-G solvation = -30987.206988 eV Core-core repulsion = 27144.650114 eV Total energy + Delta-G solvation = -3842.556874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.29080 -39.50858 -37.92419 -35.20002 -33.75103 -32.45234 -32.15382 -31.04850 -30.47095 -29.27980 -28.37195 -26.34568 -25.47593 -24.03841 -23.78978 -22.85375 -22.27911 -20.70913 -19.73546 -19.34520 -18.36059 -17.29192 -16.28263 -15.80982 -15.69012 -15.43830 -15.14698 -15.08960 -14.64466 -14.12303 -14.02877 -13.85001 -13.56840 -13.39458 -13.24428 -13.02004 -12.85598 -12.67429 -12.57732 -12.34326 -12.06462 -11.92572 -11.82098 -11.65659 -11.58869 -11.22062 -11.15667 -11.05440 -10.96928 -10.85255 -10.84087 -10.68178 -10.35812 -10.02545 -9.91724 -9.70246 -9.57996 -9.13045 -9.00701 -8.73113 -8.55128 -8.00567 -6.81879 -5.88061 -3.21617 1.20852 1.29379 3.16237 3.34785 3.41040 3.41404 3.54378 3.73967 4.40466 4.61781 4.66012 4.76700 4.89050 4.92969 5.03208 5.10049 5.14705 5.20259 5.29492 5.33318 5.37375 5.48888 5.52935 5.57287 5.58888 5.65390 5.73646 5.74721 5.81006 5.83376 5.85027 5.94136 5.97925 6.00324 6.18553 6.20631 6.26019 6.31353 6.34427 6.41669 6.45821 6.50979 6.59821 6.64726 6.69849 6.79909 6.85760 6.90988 7.02629 7.31726 7.47925 7.68102 8.11039 8.15758 8.76624 9.02585 9.65902 10.44452 11.26041 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.002583 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.487706 B =10839.330374 C =11055.830732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.078 4.078 6 C -0.062 4.062 7 C -0.103 4.103 8 H 0.091 0.909 9 C -0.143 4.143 10 C 0.510 3.490 11 O -0.561 6.561 12 N -0.589 5.589 13 C 0.111 3.889 14 C 0.171 3.829 15 H 0.104 0.896 16 C -0.135 4.135 17 C -0.120 4.120 18 C 0.132 3.868 19 H 0.077 0.923 20 C 0.093 3.907 21 N -0.583 5.583 22 C -0.232 4.232 23 H 0.074 0.926 24 C 0.001 3.999 25 N -0.907 5.907 26 Si 0.910 3.090 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.284 1.284 30 C -0.110 4.110 31 C -0.121 4.121 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.256 0.744 51 H 0.122 0.878 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 -1.144 -8.035 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.078 4.078 6 C -0.099 4.099 7 C -0.124 4.124 8 H 0.109 0.891 9 C -0.200 4.200 10 C 0.298 3.702 11 O -0.441 6.441 12 N -0.320 5.320 13 C -0.012 4.012 14 C 0.064 3.936 15 H 0.122 0.878 16 C -0.174 4.174 17 C -0.160 4.160 18 C 0.023 3.977 19 H 0.095 0.905 20 C -0.032 4.032 21 N -0.304 5.304 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.197 4.197 25 N -0.552 5.552 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.211 1.211 30 C -0.128 4.128 31 C -0.139 4.139 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.140 0.860 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.189 -1.363 -8.400 20.992 hybrid contribution 0.589 0.026 0.881 1.061 sum -18.600 -1.337 -7.519 20.107 Atomic orbital electron populations 1.20771 0.91476 1.02621 1.02100 1.19891 0.95900 0.93319 1.00535 1.21001 0.94164 0.97408 1.01135 1.21083 0.94074 0.97779 1.00128 1.19920 0.95667 0.93119 0.99079 1.20422 0.89826 1.04196 0.95481 1.21234 0.93160 1.00523 0.97471 0.89071 1.21816 1.01735 0.95768 1.00722 1.20432 0.89433 0.77373 0.83008 1.90632 1.68505 1.51118 1.33797 1.48191 1.09855 1.63826 1.10135 1.22434 0.77494 1.00881 1.00370 1.21687 0.98240 0.90048 0.83635 0.87803 1.22693 0.96534 0.99995 0.98185 1.22519 0.97092 0.98874 0.97471 1.22133 0.88310 0.91614 0.95618 0.90460 1.22717 0.94318 1.00235 0.85976 1.45167 0.98533 1.84750 1.01927 1.18897 0.94366 1.38232 0.84556 0.90787 1.24868 0.98452 0.98833 0.97589 1.69895 1.14749 1.41737 1.28813 0.86256 0.79672 0.77875 0.82242 1.21638 1.21157 1.21065 1.21083 0.93976 0.97759 1.00010 1.21005 0.94181 0.97381 1.01296 0.91413 0.91704 0.91681 0.86294 0.86036 0.90637 0.90065 0.91923 0.91560 0.92165 0.91662 0.89634 0.92780 0.92888 0.93050 0.92586 0.91541 0.91621 0.93412 0.86028 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.10 -0.88 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 5 C -0.08 -0.86 4.71 -104.62 -0.49 -1.36 16 6 C -0.06 -0.78 4.23 -27.88 -0.12 -0.89 16 7 C -0.10 -1.39 1.86 -91.77 -0.17 -1.56 16 8 H 0.09 1.16 6.68 -51.93 -0.35 0.81 16 9 C -0.14 -1.73 8.32 37.16 0.31 -1.42 16 10 C 0.51 9.15 6.86 -10.99 -0.08 9.07 16 11 O -0.56 -11.87 15.64 5.56 0.09 -11.79 16 12 N -0.59 -11.16 2.28 -171.06 -0.39 -11.55 16 13 C 0.11 2.46 5.77 -3.22 -0.02 2.44 16 14 C 0.17 3.85 3.06 -65.66 -0.20 3.65 16 15 H 0.10 2.65 6.79 -51.93 -0.35 2.30 16 16 C -0.13 -2.56 6.23 -24.95 -0.16 -2.72 16 17 C -0.12 -2.05 6.24 -24.96 -0.16 -2.20 16 18 C 0.13 2.48 4.32 -65.25 -0.28 2.20 16 19 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.09 1.61 4.96 -2.82 -0.01 1.59 16 21 N -0.58 -13.58 2.78 -152.14 -0.42 -14.00 16 22 C -0.23 -6.01 10.33 -15.06 -0.16 -6.17 16 23 H 0.07 1.87 7.87 -52.48 -0.41 1.45 16 24 C 0.00 0.02 5.34 -17.43 -0.09 -0.07 16 25 N -0.91 -24.88 10.37 55.49 0.58 -24.31 16 26 Si 0.91 21.09 29.58 -169.99 -5.03 16.07 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C -0.11 -1.13 8.13 -39.58 -0.32 -1.45 16 31 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 39 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 40 H 0.07 0.70 6.66 -51.93 -0.35 0.36 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.47 7.16 -51.93 -0.37 1.10 16 43 H 0.09 2.18 7.37 -51.93 -0.38 1.80 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 46 H 0.05 0.78 7.87 -51.93 -0.41 0.38 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.93 5.28 -51.92 -0.27 0.66 16 49 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.12 1.13 8.05 -52.49 -0.42 0.70 16 52 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -29.37 399.44 -11.21 -40.58 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.70 Total: 4.33 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.35 Total: -5.36 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.24 Total: -49.85 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.37 -11.21 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.989 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds