Wall clock time and date at job start Wed Apr 1 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00279 * 2 1 4 4 C 1.38237 * 119.99737 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.00263 * 359.95663 * 4 3 2 6 6 C 1.50707 * 119.99795 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46906 * 89.99835 * 6 5 4 8 8 H 1.08994 * 109.47672 * 304.99565 * 7 6 5 9 9 C 1.53005 * 109.47026 * 65.00380 * 7 6 5 10 10 C 1.50702 * 109.46809 * 184.99721 * 7 6 5 11 11 O 1.21279 * 119.99971 * 339.68179 * 10 7 6 12 12 N 1.34775 * 120.00006 * 159.68398 * 10 7 6 13 13 C 1.47161 * 120.71207 * 185.28650 * 12 10 7 14 14 C 1.53892 * 108.03642 * 132.73388 * 13 12 10 15 15 H 1.08993 * 112.09606 * 181.91206 * 14 13 12 16 16 C 1.54553 * 108.36249 * 306.25019 * 14 13 12 17 17 C 1.54824 * 104.74120 * 89.17413 * 16 14 13 18 18 C 1.54544 * 104.74686 * 359.97438 * 17 16 14 19 19 H 1.09004 * 112.67914 * 146.81175 * 18 17 16 20 20 C 1.47168 * 120.71079 * 5.25883 * 12 10 7 21 21 N 1.48301 * 107.20791 * 58.35561 * 14 13 12 22 22 C 1.36937 * 128.07477 * 106.09875 * 21 14 13 23 23 H 1.08005 * 119.99601 * 161.89551 * 22 21 14 24 24 C 1.38809 * 120.00131 * 341.88844 * 22 21 14 25 25 N 1.31618 * 120.00140 * 345.58183 * 24 22 21 26 26 Si 1.86798 * 119.99775 * 165.57621 * 24 22 21 27 27 H 1.48504 * 109.46720 * 180.02562 * 26 24 22 28 28 H 1.48496 * 109.47508 * 300.00326 * 26 24 22 29 29 H 1.48501 * 109.47212 * 60.00338 * 26 24 22 30 30 C 1.38231 * 120.00201 * 0.27571 * 5 4 3 31 31 C 1.38235 * 119.99684 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47148 * 89.99648 * 1 2 3 33 33 H 1.08998 * 109.47401 * 210.00183 * 1 2 3 34 34 H 1.09003 * 109.46965 * 329.99482 * 1 2 3 35 35 H 1.08002 * 119.99647 * 359.97438 * 3 2 1 36 36 H 1.08007 * 119.99431 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.46793 * 330.00169 * 6 5 4 38 38 H 1.09005 * 109.46843 * 209.99753 * 6 5 4 39 39 H 1.09001 * 109.47108 * 174.40012 * 9 7 6 40 40 H 1.09004 * 109.46824 * 294.38877 * 9 7 6 41 41 H 1.08993 * 109.47456 * 54.39470 * 9 7 6 42 42 H 1.08998 * 109.74718 * 13.09933 * 13 12 10 43 43 H 1.09003 * 109.78843 * 252.39299 * 13 12 10 44 44 H 1.09001 * 110.36142 * 208.13805 * 16 14 13 45 45 H 1.08996 * 110.36459 * 330.45546 * 16 14 13 46 46 H 1.08999 * 110.30642 * 241.24035 * 17 16 14 47 47 H 1.09000 * 110.61637 * 118.90659 * 17 16 14 48 48 H 1.09008 * 109.74670 * 346.90123 * 20 12 10 49 49 H 1.08996 * 109.74789 * 107.58139 * 20 12 10 50 50 H 0.97000 * 120.00270 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.00381 * 179.72822 * 30 5 4 52 52 H 1.08007 * 120.00343 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0001 -0.0002 6 6 5.7787 -0.0002 -0.0002 7 6 6.2887 0.0003 1.4423 8 1 5.8542 0.8423 1.9811 9 6 5.8839 -1.3069 2.1268 10 6 7.7906 0.1241 1.4440 11 8 8.4237 -0.1612 0.4497 12 7 8.4303 0.5517 2.5506 13 6 9.8825 0.7889 2.5348 14 6 10.1491 2.1564 3.1885 15 1 11.2080 2.4147 3.1816 16 6 9.2851 3.2167 2.4688 17 6 7.9446 3.2244 3.2434 18 6 8.1272 2.1676 4.3561 19 1 7.5938 2.4245 5.2714 20 6 7.6912 0.7920 3.8003 21 7 9.5945 2.1013 4.5628 22 6 10.2775 2.0052 5.7458 23 1 9.7893 2.2642 6.6737 24 6 11.5972 1.5748 5.7524 25 7 12.1054 0.9942 4.6861 26 14 12.6519 1.8198 7.2745 27 1 14.0121 1.2780 7.0266 28 1 12.7456 3.2691 7.5838 29 1 12.0365 1.1074 8.4230 30 6 3.5805 -1.1972 -0.0050 31 6 2.1981 -1.1972 0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1324 -0.0004 36 1 4.1206 2.1324 -0.0010 37 1 6.1420 0.8897 -0.5142 38 1 6.1420 -0.8904 -0.5137 39 1 6.3307 -1.3504 3.1200 40 1 4.7983 -1.3500 2.2146 41 1 6.2343 -2.1513 1.5334 42 1 10.2434 0.7957 1.5063 43 1 10.3904 0.0061 3.0982 44 1 9.7629 4.1950 2.5222 45 1 9.1203 2.9303 1.4302 46 1 7.1246 2.9418 2.5832 47 1 7.7587 4.2061 3.6791 48 1 6.6200 0.8008 3.5989 49 1 7.9238 0.0091 4.5221 50 1 13.0277 0.6938 4.6905 51 1 4.1204 -2.1326 -0.0092 52 1 1.6581 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029599243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:49 Heat of formation + Delta-G solvation = -3.372263 kcal Electronic energy + Delta-G solvation = -30987.761163 eV Core-core repulsion = 27144.650114 eV Total energy + Delta-G solvation = -3843.111050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.71617 -40.40319 -39.40148 -36.24636 -35.40036 -34.17871 -33.13897 -32.03103 -31.73791 -31.04441 -29.20112 -27.92092 -26.42872 -25.56185 -25.47857 -23.72893 -23.34000 -21.57897 -21.25871 -20.93112 -19.90423 -18.72717 -17.84775 -17.04107 -16.73608 -16.66129 -16.44272 -16.33612 -15.86282 -15.58409 -15.34670 -14.91352 -14.66952 -14.57099 -14.43052 -14.41604 -14.18314 -13.75948 -13.58477 -13.38694 -13.30613 -13.20995 -13.04823 -12.91092 -12.85971 -12.76222 -12.67009 -12.59070 -12.08133 -12.04180 -11.95605 -11.82011 -11.78038 -11.67229 -11.51824 -11.46741 -11.14140 -10.76120 -10.49265 -9.73255 -9.69438 -9.29881 -8.67018 -7.87727 -5.21247 0.47549 0.58411 1.48225 1.50609 1.56434 1.71907 2.15532 2.51424 2.90456 3.32593 3.46299 3.53709 3.85047 3.97381 4.05091 4.06896 4.12113 4.14349 4.23546 4.24337 4.26209 4.29313 4.32298 4.46999 4.49396 4.65933 4.69308 4.72171 4.78673 4.82660 4.86985 4.89455 4.91262 4.96789 4.98459 5.03479 5.07476 5.13051 5.15155 5.19236 5.24053 5.27086 5.31005 5.38005 5.42178 5.53750 5.59577 5.60249 5.79168 5.82116 5.83530 6.21116 6.21518 6.66356 7.04656 7.27830 7.72887 8.53610 9.25102 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.002583 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.487706 B =10839.330374 C =11055.830732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.090 4.090 6 C -0.053 4.053 7 C -0.090 4.090 8 H 0.111 0.889 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.597 6.597 12 N -0.591 5.591 13 C 0.127 3.873 14 C 0.170 3.830 15 H 0.063 0.937 16 C -0.126 4.126 17 C -0.108 4.108 18 C 0.125 3.875 19 H 0.095 0.905 20 C 0.099 3.901 21 N -0.602 5.602 22 C -0.235 4.235 23 H 0.080 0.920 24 C -0.054 4.054 25 N -0.935 5.935 26 Si 0.969 3.031 27 H -0.301 1.301 28 H -0.281 1.281 29 H -0.277 1.277 30 C -0.118 4.118 31 C -0.127 4.127 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.047 0.953 50 H 0.246 0.754 51 H 0.126 0.874 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.794 -0.338 -7.621 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.090 4.090 6 C -0.091 4.091 7 C -0.111 4.111 8 H 0.129 0.871 9 C -0.195 4.195 10 C 0.298 3.702 11 O -0.479 6.479 12 N -0.322 5.322 13 C 0.002 3.998 14 C 0.062 3.938 15 H 0.081 0.919 16 C -0.166 4.166 17 C -0.147 4.147 18 C 0.018 3.982 19 H 0.113 0.887 20 C -0.025 4.025 21 N -0.324 5.324 22 C -0.364 4.364 23 H 0.098 0.902 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.798 3.202 27 H -0.228 1.228 28 H -0.208 1.208 29 H -0.203 1.203 30 C -0.136 4.136 31 C -0.145 4.145 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.144 0.856 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.229 -0.546 -7.974 24.565 hybrid contribution 1.761 -0.252 0.693 1.909 sum -21.468 -0.798 -7.282 22.683 Atomic orbital electron populations 1.20821 0.89707 1.03522 1.02867 1.20253 0.97332 0.93104 0.99291 1.21260 0.93924 0.98441 1.00757 1.21230 0.94712 0.97762 1.00192 1.19762 0.94387 0.93920 1.00928 1.20282 0.91230 1.03134 0.94448 1.21234 0.89100 1.02008 0.98775 0.87140 1.21801 1.03086 0.94626 1.00021 1.21290 0.91324 0.75799 0.81803 1.90617 1.69814 1.52351 1.35099 1.48200 1.08446 1.64178 1.11356 1.21919 0.79710 0.99584 0.98552 1.21520 0.96825 0.91125 0.84292 0.91907 1.22573 0.97237 0.98649 0.98099 1.22465 0.96297 0.99152 0.96797 1.22433 0.85664 0.92869 0.97206 0.88736 1.22723 0.96326 0.98737 0.84710 1.45349 1.00844 1.84899 1.01339 1.19231 0.94686 1.36708 0.85748 0.90182 1.25576 0.99798 0.99569 0.99973 1.70086 1.14208 1.43324 1.30530 0.85309 0.77601 0.77668 0.79612 1.22789 1.20767 1.20300 1.21207 0.94602 0.97686 1.00084 1.21262 0.93921 0.98424 1.00880 0.90625 0.90835 0.90827 0.84574 0.85415 0.91548 0.91412 0.92350 0.89293 0.92750 0.93055 0.93886 0.92489 0.92704 0.90408 0.90911 0.87174 0.93452 0.94474 0.85609 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.24 0.71 -0.39 16 2 C -0.10 -1.51 5.88 -19.87 -0.12 -1.62 16 3 C -0.13 -2.00 9.70 22.27 0.22 -1.79 16 4 C -0.12 -2.21 9.70 22.27 0.22 -1.99 16 5 C -0.09 -1.80 4.71 -19.87 -0.09 -1.89 16 6 C -0.05 -1.27 4.23 29.85 0.13 -1.14 16 7 C -0.09 -2.24 1.86 -11.54 -0.02 -2.26 16 8 H 0.11 2.35 6.68 -2.39 -0.02 2.34 16 9 C -0.14 -3.03 8.32 71.98 0.60 -2.43 16 10 C 0.51 17.94 6.86 87.66 0.60 18.54 16 11 O -0.60 -25.73 15.64 -3.03 -0.05 -25.77 16 12 N -0.59 -22.26 2.28 -813.50 -1.86 -24.12 16 13 C 0.13 5.89 5.77 86.55 0.50 6.39 16 14 C 0.17 7.88 3.06 45.47 0.14 8.02 16 15 H 0.06 3.40 6.79 -2.39 -0.02 3.39 16 16 C -0.13 -4.71 6.23 31.75 0.20 -4.51 16 17 C -0.11 -3.34 6.24 31.74 0.20 -3.14 16 18 C 0.13 4.44 4.32 45.72 0.20 4.64 16 19 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 20 C 0.10 3.25 4.96 86.81 0.43 3.68 16 21 N -0.60 -28.16 2.78 -635.26 -1.76 -29.92 16 22 C -0.23 -12.23 10.33 84.03 0.87 -11.36 16 23 H 0.08 3.98 7.87 -2.91 -0.02 3.96 16 24 C -0.05 -2.94 5.34 84.86 0.45 -2.49 16 25 N -0.93 -53.91 10.37 21.65 0.22 -53.69 16 26 Si 0.97 44.34 29.58 68.60 2.03 46.37 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 30 C -0.12 -2.14 8.13 22.27 0.18 -1.96 16 31 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 38 H 0.07 1.78 8.00 -2.38 -0.02 1.76 16 39 H 0.06 1.34 6.96 -2.39 -0.02 1.33 16 40 H 0.09 1.59 6.66 -2.38 -0.02 1.57 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 2.46 7.16 -2.39 -0.02 2.45 16 43 H 0.04 2.34 7.37 -2.39 -0.02 2.33 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 2.01 7.86 -2.39 -0.02 1.99 16 46 H 0.08 2.02 7.87 -2.39 -0.02 2.00 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.11 2.65 5.28 -2.38 -0.01 2.64 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 51 H 0.13 2.10 8.05 -2.91 -0.02 2.08 16 52 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -66.67 399.44 5.09 -61.58 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.89 Total: 23.08 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.62 Total: 2.48 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.40 Total: -107.73 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.67 5.09 -61.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.206 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds