Wall clock time and date at job start Wed Apr 1 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00121 * 2 1 4 4 C 1.38214 * 120.00102 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.00126 * 359.93799 * 4 3 2 6 6 C 1.38213 * 119.99676 * 0.04314 * 5 4 3 7 7 C 1.38216 * 119.99992 * 179.97438 * 2 1 3 8 8 C 1.50693 * 120.00237 * 359.97438 * 7 2 1 9 9 C 1.52998 * 109.47334 * 84.98048 * 8 7 2 10 10 H 1.09005 * 109.47063 * 304.99688 * 9 8 7 11 11 C 1.52997 * 109.47210 * 65.00087 * 9 8 7 12 12 C 1.50700 * 109.47199 * 185.00220 * 9 8 7 13 13 O 1.21278 * 120.00372 * 344.18057 * 12 9 8 14 14 N 1.34780 * 119.99850 * 164.17937 * 12 9 8 15 15 C 1.47162 * 120.70723 * 185.23920 * 14 12 9 16 16 C 1.54326 * 107.80033 * 132.68083 * 15 14 12 17 17 H 1.09005 * 112.53265 * 182.37680 * 16 15 14 18 18 C 1.54542 * 107.98710 * 306.73956 * 16 15 14 19 19 C 1.54285 * 104.84597 * 89.01607 * 18 16 15 20 20 C 1.54543 * 104.85084 * 359.97438 * 19 18 16 21 21 H 1.08996 * 112.67829 * 146.68140 * 20 19 18 22 22 C 1.47158 * 120.71137 * 5.51720 * 14 12 9 23 23 N 1.48306 * 107.10196 * 58.62195 * 16 15 14 24 24 C 1.36936 * 128.07860 * 106.56862 * 23 16 15 25 25 H 1.08002 * 120.00196 * 163.92208 * 24 23 16 26 26 C 1.38810 * 120.00238 * 343.92746 * 24 23 16 27 27 N 1.31618 * 119.99842 * 350.35850 * 26 24 23 28 28 Si 1.86802 * 120.00304 * 170.35565 * 26 24 23 29 29 H 1.48501 * 109.46797 * 90.00224 * 28 26 24 30 30 H 1.48498 * 109.47072 * 210.00406 * 28 26 24 31 31 H 1.48500 * 109.46668 * 330.00217 * 28 26 24 32 32 H 1.08996 * 109.46838 * 270.01426 * 1 2 3 33 33 H 1.08996 * 109.47641 * 30.01727 * 1 2 3 34 34 H 1.08999 * 109.47162 * 150.02287 * 1 2 3 35 35 H 1.07998 * 119.99666 * 0.02562 * 3 2 1 36 36 H 1.08002 * 119.99724 * 179.97438 * 4 3 2 37 37 H 1.07997 * 119.99812 * 180.31754 * 5 4 3 38 38 H 1.08002 * 119.99537 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47546 * 204.97884 * 8 7 2 40 40 H 1.08999 * 109.47222 * 324.97544 * 8 7 2 41 41 H 1.09006 * 109.46864 * 293.68781 * 11 9 8 42 42 H 1.08990 * 109.47321 * 53.69102 * 11 9 8 43 43 H 1.09005 * 109.46980 * 173.69180 * 11 9 8 44 44 H 1.08994 * 109.75191 * 252.38688 * 15 14 12 45 45 H 1.09004 * 109.75443 * 13.12392 * 15 14 12 46 46 H 1.09004 * 110.36422 * 207.85745 * 18 16 15 47 47 H 1.09003 * 110.36554 * 330.17095 * 18 16 15 48 48 H 1.09001 * 110.36225 * 241.15923 * 19 18 16 49 49 H 1.09000 * 110.36121 * 118.84672 * 19 18 16 50 50 H 1.09002 * 109.74950 * 346.88208 * 22 14 12 51 51 H 1.09003 * 109.74933 * 107.56067 * 22 14 12 52 52 H 0.97003 * 120.00094 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2718 0.0000 0.0002 6 6 3.5806 -1.1969 0.0006 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 1.0798 -2.8816 -1.4348 10 1 0.5297 -2.0627 -1.8985 11 6 2.3578 -3.1529 -2.2310 12 6 0.2219 -4.1206 -1.4246 13 8 0.1637 -4.8098 -0.4284 14 7 -0.4809 -4.4627 -2.5226 15 6 -1.4113 -5.6026 -2.4944 16 6 -2.7385 -5.1442 -3.1348 17 1 -3.5017 -5.9222 -3.1164 18 6 -3.1984 -3.8584 -2.4113 19 6 -2.5361 -2.7057 -3.1943 20 6 -1.7357 -3.3998 -4.3194 21 1 -1.7013 -2.8105 -5.2357 22 6 -0.3297 -3.7082 -3.7770 23 7 -2.4260 -4.6982 -4.5143 24 6 -2.7083 -5.3364 -5.6925 25 1 -2.6617 -4.7938 -6.6252 26 6 -3.0545 -6.6806 -5.6882 27 7 -2.9289 -7.3889 -4.5860 28 14 -3.6987 -7.4843 -7.2466 29 1 -2.5610 -8.0354 -8.0258 30 1 -4.6314 -8.5828 -6.8879 31 1 -4.4157 -6.4735 -8.0647 32 1 -0.3633 0.0003 1.0276 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6583 2.1326 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 0.0000 0.0050 38 1 4.1207 -2.1322 0.0008 39 1 2.0698 -3.2822 0.4359 40 1 0.5344 -2.3956 0.5918 41 1 2.9250 -2.2277 -2.3339 42 1 2.9621 -3.8931 -1.7069 43 1 2.0968 -3.5309 -3.2195 44 1 -0.9927 -6.4338 -3.0618 45 1 -1.5857 -5.9103 -1.4634 46 1 -4.2841 -3.7689 -2.4503 47 1 -2.8542 -3.8613 -1.3770 48 1 -1.8663 -2.1419 -2.5451 49 1 -3.2962 -2.0494 -3.6183 50 1 0.2033 -2.7770 -3.5847 51 1 0.2229 -4.3059 -4.5020 52 1 -3.1712 -8.3282 -4.5828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029601969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:58 Heat of formation + Delta-G solvation = -0.416574 kcal Electronic energy + Delta-G solvation = -31563.655107 eV Core-core repulsion = 27720.672226 eV Total energy + Delta-G solvation = -3842.982881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.78505 -40.51420 -39.38106 -36.04278 -35.37448 -34.16184 -33.52178 -32.38446 -31.49605 -31.01109 -28.18039 -27.93004 -27.32907 -25.76018 -25.43747 -23.92929 -22.80660 -21.53898 -21.24936 -20.86050 -19.92595 -18.71919 -17.83999 -17.08697 -17.00756 -16.72131 -16.49653 -16.42961 -15.73367 -15.52758 -15.35226 -14.96133 -14.66025 -14.51857 -14.44049 -14.37120 -13.93566 -13.73588 -13.56490 -13.44905 -13.28875 -13.18495 -13.04958 -12.97572 -12.84490 -12.77397 -12.73174 -12.56889 -12.18534 -12.02705 -11.98319 -11.78928 -11.68238 -11.67066 -11.49712 -11.43465 -11.11165 -10.79722 -10.49334 -9.69803 -9.60420 -9.38150 -8.68035 -7.84981 -5.20331 0.50823 0.57151 1.48341 1.49848 1.57977 1.71392 2.15083 2.51509 2.92244 3.35099 3.46123 3.53688 3.83751 3.96848 4.05111 4.08695 4.10728 4.14957 4.21785 4.25137 4.29311 4.32725 4.33823 4.45757 4.54488 4.58357 4.66197 4.72358 4.80800 4.83685 4.85791 4.86792 4.90577 4.98239 4.99144 5.04893 5.07292 5.11428 5.13173 5.18430 5.24154 5.29268 5.31972 5.41731 5.43257 5.54956 5.59245 5.68818 5.71067 5.85187 5.85946 6.22017 6.23471 6.65697 7.06437 7.27396 7.74006 8.53210 9.26933 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.002852 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.350675 B = 9815.187465 C = 9974.714697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.053 4.053 9 C -0.089 4.089 10 H 0.110 0.890 11 C -0.139 4.139 12 C 0.508 3.492 13 O -0.596 6.596 14 N -0.591 5.591 15 C 0.129 3.871 16 C 0.167 3.833 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.109 4.109 20 C 0.126 3.874 21 H 0.095 0.905 22 C 0.099 3.901 23 N -0.604 5.604 24 C -0.230 4.230 25 H 0.082 0.918 26 C -0.057 4.057 27 N -0.938 5.938 28 Si 0.970 3.030 29 H -0.290 1.290 30 H -0.300 1.300 31 H -0.270 1.270 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.111 0.889 51 H 0.048 0.952 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.381 19.537 7.286 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.088 4.088 8 C -0.091 4.091 9 C -0.110 4.110 10 H 0.128 0.872 11 C -0.197 4.197 12 C 0.298 3.702 13 O -0.478 6.478 14 N -0.322 5.322 15 C 0.005 3.995 16 C 0.060 3.940 17 H 0.092 0.908 18 C -0.166 4.166 19 C -0.148 4.148 20 C 0.018 3.982 21 H 0.113 0.887 22 C -0.025 4.025 23 N -0.326 5.326 24 C -0.359 4.359 25 H 0.100 0.900 26 C -0.252 4.252 27 N -0.586 5.586 28 Si 0.800 3.200 29 H -0.217 1.217 30 H -0.227 1.227 31 H -0.195 1.195 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.129 0.871 51 H 0.066 0.934 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.255 18.953 7.639 23.329 hybrid contribution -0.476 -1.591 -0.682 1.796 sum 10.778 17.361 6.957 21.587 Atomic orbital electron populations 1.20901 0.90774 1.03330 1.02706 1.19981 0.96603 0.92738 0.99737 1.21277 0.94719 0.97709 1.00715 1.21427 0.94381 0.98821 0.99683 1.21373 1.00802 0.92262 1.00480 1.21216 0.93409 0.98934 1.00244 1.19671 0.93993 0.93847 1.01284 1.20271 1.00038 0.94235 0.94564 1.21226 0.96920 0.94443 0.98452 0.87168 1.21825 0.95314 1.03157 0.99393 1.21276 0.79722 0.87336 0.81865 1.90620 1.66641 1.55734 1.34757 1.48200 1.41240 1.31188 1.11541 1.21972 0.91467 0.87511 0.98572 1.21735 0.93583 0.94812 0.83904 0.90843 1.22495 0.99529 0.96469 0.98114 1.22403 0.99174 0.96490 0.96731 1.22271 0.90570 0.88018 0.97300 0.88705 1.22600 0.99202 0.96055 0.84623 1.45353 1.65345 1.20512 1.01361 1.19304 1.39250 0.91696 0.85689 0.90014 1.25560 1.03210 0.96613 0.99774 1.70056 1.53605 1.07036 1.27884 0.85213 0.77500 0.77834 0.79487 1.21748 1.22688 1.19508 0.91019 0.89995 0.91976 0.84487 0.84174 0.84454 0.85734 0.91571 0.91419 0.89435 0.92747 0.92088 0.94551 0.92927 0.92697 0.92740 0.90391 0.91056 0.87124 0.93367 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.22 71.23 0.66 -1.32 16 2 C -0.09 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 4 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 5 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 6 C -0.12 -2.19 8.54 22.27 0.19 -2.00 16 7 C -0.09 -1.78 4.57 -19.87 -0.09 -1.87 16 8 C -0.05 -1.28 3.46 29.85 0.10 -1.18 16 9 C -0.09 -2.21 1.61 -11.54 -0.02 -2.23 16 10 H 0.11 2.35 5.85 -2.38 -0.01 2.34 16 11 C -0.14 -3.04 8.30 71.98 0.60 -2.44 16 12 C 0.51 17.73 6.92 87.66 0.61 18.33 16 13 O -0.60 -25.42 15.59 -3.02 -0.05 -25.47 16 14 N -0.59 -21.93 2.24 -814.26 -1.83 -23.76 16 15 C 0.13 5.95 5.81 86.70 0.50 6.45 16 16 C 0.17 7.73 3.12 45.62 0.14 7.87 16 17 H 0.07 3.99 6.45 -2.38 -0.02 3.98 16 18 C -0.13 -4.71 6.19 31.55 0.20 -4.52 16 19 C -0.11 -3.34 6.19 31.55 0.20 -3.14 16 20 C 0.13 4.40 4.31 45.44 0.20 4.60 16 21 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 22 C 0.10 3.20 4.63 86.53 0.40 3.60 16 23 N -0.60 -28.11 2.80 -635.95 -1.78 -29.89 16 24 C -0.23 -11.95 10.37 84.03 0.87 -11.08 16 25 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 26 C -0.06 -3.10 5.41 84.86 0.46 -2.64 16 27 N -0.94 -53.93 10.39 21.65 0.23 -53.70 16 28 Si 0.97 44.28 29.56 68.60 2.03 46.31 16 29 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.06 1.14 5.49 -2.39 -0.01 1.12 16 35 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.07 1.75 7.99 -2.39 -0.02 1.73 16 40 H 0.07 1.75 6.99 -2.39 -0.02 1.74 16 41 H 0.09 1.57 6.93 -2.38 -0.02 1.55 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.38 6.43 -2.38 -0.02 1.37 16 44 H 0.04 1.96 7.75 -2.39 -0.02 1.94 16 45 H 0.05 2.50 7.16 -2.39 -0.02 2.49 16 46 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.05 1.98 7.85 -2.39 -0.02 1.97 16 48 H 0.08 1.99 7.84 -2.39 -0.02 1.97 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.11 2.62 5.16 -2.39 -0.01 2.61 16 51 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.29 393.43 5.05 -61.24 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.90 Total: 23.74 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.55 Total: 1.54 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -3.38 Total: -107.35 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.29 5.05 -61.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029601969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.821 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds