Wall clock time and date at job start Wed Apr 1 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38258 * 119.99786 * 2 1 4 4 C 1.38212 * 119.99743 * 180.23106 * 3 2 1 5 5 C 1.38263 * 120.00132 * 359.80812 * 4 3 2 6 6 C 1.38208 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00035 * 179.78401 * 2 1 3 8 8 C 1.50703 * 120.00208 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47306 * 279.80725 * 8 7 2 10 10 H 1.09002 * 109.47094 * 55.94355 * 9 8 7 11 11 C 1.53005 * 109.46802 * 295.94591 * 9 8 7 12 12 C 1.50695 * 109.47186 * 175.94255 * 9 8 7 13 13 O 1.21279 * 120.00073 * 8.44674 * 12 9 8 14 14 N 1.34777 * 119.99797 * 188.44097 * 12 9 8 15 15 C 1.48429 * 120.83844 * 3.57570 * 14 12 9 16 16 C 1.53882 * 107.37547 * 132.53430 * 15 14 12 17 17 H 1.09001 * 112.09539 * 182.52085 * 16 15 14 18 18 C 1.54550 * 108.37004 * 306.86152 * 16 15 14 19 19 C 1.54278 * 104.84527 * 89.30543 * 18 16 15 20 20 C 1.54542 * 104.85112 * 359.97438 * 19 18 16 21 21 H 1.09003 * 112.67954 * 146.68992 * 20 19 18 22 22 C 1.47166 * 120.70848 * 183.96438 * 14 12 9 23 23 N 1.48303 * 107.21223 * 58.97303 * 16 15 14 24 24 C 1.36936 * 128.08102 * 106.11222 * 23 16 15 25 25 H 1.07999 * 119.99768 * 13.82365 * 24 23 16 26 26 C 1.38817 * 120.00308 * 193.82997 * 24 23 16 27 27 N 1.31620 * 119.99883 * 9.98409 * 26 24 23 28 28 Si 1.86796 * 120.00159 * 189.98159 * 26 24 23 29 29 H 1.48509 * 109.47083 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.46932 * 119.99504 * 28 26 24 31 31 H 1.48491 * 109.47363 * 240.00141 * 28 26 24 32 32 H 1.09004 * 109.47236 * 269.55155 * 1 2 3 33 33 H 1.08996 * 109.46835 * 29.55537 * 1 2 3 34 34 H 1.09004 * 109.46610 * 149.55473 * 1 2 3 35 35 H 1.07996 * 119.99830 * 0.06190 * 3 2 1 36 36 H 1.07997 * 120.00229 * 179.83335 * 4 3 2 37 37 H 1.07997 * 119.99829 * 180.02562 * 5 4 3 38 38 H 1.08000 * 120.00677 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.47129 * 159.79881 * 8 7 2 40 40 H 1.09006 * 109.46868 * 39.80815 * 8 7 2 41 41 H 1.09000 * 109.46932 * 305.56604 * 11 9 8 42 42 H 1.08999 * 109.47552 * 65.56878 * 11 9 8 43 43 H 1.08996 * 109.46771 * 185.57213 * 11 9 8 44 44 H 1.09002 * 109.56227 * 13.39125 * 15 14 12 45 45 H 1.09001 * 110.58020 * 252.25405 * 15 14 12 46 46 H 1.09004 * 110.36180 * 208.14655 * 18 16 15 47 47 H 1.08994 * 110.36178 * 330.46005 * 18 16 15 48 48 H 1.09002 * 110.36208 * 241.15304 * 19 18 16 49 49 H 1.08999 * 110.46060 * 118.89037 * 19 18 16 50 50 H 1.08991 * 109.75815 * 107.60711 * 22 14 12 51 51 H 1.09008 * 109.74717 * 346.87291 * 22 14 12 52 52 H 0.97000 * 120.00114 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0056 6 6 3.5807 -1.1969 -0.0011 7 6 2.1981 -1.1969 0.0045 8 6 1.4447 -2.5021 0.0088 9 6 0.9763 -2.8159 1.4311 10 1 0.3815 -1.9846 1.8095 11 6 2.1935 -3.0248 2.3344 12 6 0.1386 -4.0685 1.4193 13 8 0.0614 -4.7368 0.4102 14 7 -0.5246 -4.4462 2.5301 15 6 -0.5071 -3.6019 3.7508 16 6 -1.9590 -3.4793 4.2457 17 1 -2.0409 -2.8341 5.1204 18 6 -2.8336 -2.9841 3.0716 19 6 -3.2997 -4.2693 2.3565 20 6 -2.6639 -5.4241 3.1630 21 1 -3.2917 -6.3149 3.1878 22 6 -1.2766 -5.7107 2.5630 23 7 -2.4483 -4.8531 4.5149 24 6 -2.6533 -5.4541 5.7282 25 1 -2.6702 -4.8592 6.6294 26 6 -2.8390 -6.8279 5.7998 27 7 -2.6249 -7.5771 4.7390 28 14 -3.3928 -7.6133 7.4016 29 1 -3.5635 -6.5612 8.4357 30 1 -4.6858 -8.3120 7.1891 31 1 -2.3702 -8.5906 7.8532 32 1 -0.3634 -0.0080 1.0277 33 1 -0.3633 0.8939 -0.5069 34 1 -0.3633 -0.8860 -0.5208 35 1 1.6582 2.1326 0.0010 36 1 4.1204 2.1326 -0.0075 37 1 5.3517 0.0000 -0.0090 38 1 4.1206 -2.1323 -0.0022 39 1 2.0984 -3.3002 -0.3429 40 1 0.5795 -2.4243 -0.6497 41 1 2.8395 -3.7891 1.9025 42 1 2.7459 -2.0892 2.4219 43 1 1.8622 -3.3449 3.3222 44 1 -0.1167 -2.6141 3.5058 45 1 0.1085 -4.0602 4.5248 46 1 -3.6916 -2.4263 3.4467 47 1 -2.2446 -2.3656 2.3945 48 1 -2.9399 -4.2826 1.3276 49 1 -4.3868 -4.3445 2.3783 50 1 -0.7501 -6.4365 3.1826 51 1 -1.3865 -6.1004 1.5509 52 1 -2.7544 -8.5371 4.7891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029601970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:03 Heat of formation + Delta-G solvation = 13.615626 kcal Electronic energy + Delta-G solvation = -31505.101049 eV Core-core repulsion = 27662.726649 eV Total energy + Delta-G solvation = -3842.374400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.36769 -39.55447 -37.90403 -34.93480 -33.70980 -32.77485 -32.35801 -31.12920 -30.27711 -29.26428 -27.35219 -26.54908 -26.27006 -24.12663 -23.82360 -22.70154 -22.04235 -20.57527 -19.71193 -19.30642 -18.41647 -17.24364 -16.41565 -16.07302 -15.77717 -15.51012 -15.14367 -14.94365 -14.63542 -14.20935 -13.94592 -13.76367 -13.29780 -13.29256 -13.15686 -13.04775 -12.86720 -12.69434 -12.52306 -12.28043 -12.13574 -11.91595 -11.82694 -11.66186 -11.54604 -11.22503 -11.15156 -11.01683 -10.91536 -10.88174 -10.81359 -10.69450 -10.33147 -10.03121 -9.85677 -9.66152 -9.54978 -9.14364 -8.88913 -8.79351 -8.63201 -8.02088 -6.86200 -5.85354 -3.20518 1.24294 1.27766 3.15489 3.33918 3.40455 3.42550 3.54456 3.71830 4.39497 4.61293 4.69113 4.82519 4.87872 4.93329 5.06296 5.07916 5.15340 5.20515 5.30696 5.37465 5.47132 5.51703 5.57826 5.61007 5.64861 5.69497 5.74495 5.79275 5.81991 5.84741 5.87828 5.95332 5.97894 6.02653 6.18584 6.26190 6.26639 6.32827 6.38149 6.39529 6.42042 6.52646 6.62872 6.64421 6.71577 6.80161 6.88105 6.91920 6.99890 7.30003 7.49943 7.69902 8.10897 8.13829 8.75131 9.03967 9.66344 10.42497 11.27158 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002814 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.778703 B = 9946.656029 C =10051.625875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.074 4.074 8 C -0.062 4.062 9 C -0.102 4.102 10 H 0.092 0.908 11 C -0.144 4.144 12 C 0.510 3.490 13 O -0.561 6.561 14 N -0.591 5.591 15 C 0.096 3.904 16 C 0.132 3.868 17 H 0.076 0.924 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.166 3.834 21 H 0.120 0.880 22 C 0.111 3.889 23 N -0.584 5.584 24 C -0.226 4.226 25 H 0.077 0.923 26 C -0.004 4.004 27 N -0.912 5.912 28 Si 0.911 3.089 29 H -0.280 1.280 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 15.924 -7.996 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.074 4.074 8 C -0.100 4.100 9 C -0.123 4.123 10 H 0.110 0.890 11 C -0.202 4.202 12 C 0.298 3.702 13 O -0.441 6.441 14 N -0.323 5.323 15 C -0.029 4.029 16 C 0.023 3.977 17 H 0.094 0.906 18 C -0.160 4.160 19 C -0.174 4.174 20 C 0.059 3.941 21 H 0.138 0.862 22 C -0.012 4.012 23 N -0.306 5.306 24 C -0.354 4.354 25 H 0.095 0.905 26 C -0.201 4.201 27 N -0.558 5.558 28 Si 0.742 3.258 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.086 0.914 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.151 15.303 -8.346 19.687 hybrid contribution -0.064 -0.386 0.923 1.003 sum 9.087 14.917 -7.423 18.979 Atomic orbital electron populations 1.20902 0.91242 1.02981 1.02620 1.19805 0.96088 0.92581 0.99662 1.21004 0.94244 0.97365 1.01207 1.21080 0.94315 0.97914 1.00986 1.21097 0.99677 0.92579 1.01095 1.21079 0.93608 0.98106 1.00108 1.19802 0.93653 0.94588 0.99364 1.20427 1.00218 0.93565 0.95744 1.21210 0.97268 0.96870 0.96963 0.89026 1.21836 0.96637 1.02225 0.99478 1.20429 0.79974 0.86675 0.83139 1.90633 1.64791 1.56344 1.32296 1.48504 1.48972 1.22903 1.11871 1.22800 1.00156 0.93149 0.86798 1.21957 0.90666 0.89637 0.95397 0.90555 1.22447 0.98899 0.97267 0.97381 1.22613 0.99640 0.96757 0.98433 1.21937 0.93104 0.95974 0.83091 0.86228 1.22408 0.94547 0.83633 1.00587 1.45191 1.74494 1.09105 1.01765 1.19036 1.42521 0.89933 0.83906 0.90519 1.24821 1.01848 0.95850 0.97568 1.69841 1.53275 1.04624 1.28096 0.86067 0.78039 0.79138 0.82575 1.20504 1.21686 1.21820 0.90932 0.91725 0.90913 0.86309 0.86438 0.86370 0.86117 0.90372 0.90115 0.92296 0.91738 0.91631 0.91545 0.91471 0.92690 0.93112 0.92843 0.92919 0.90538 0.91364 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.94 36.01 0.32 -0.82 16 2 C -0.08 -0.85 5.88 -104.62 -0.61 -1.47 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 5 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.11 -1.14 8.92 -39.58 -0.35 -1.50 16 7 C -0.07 -0.83 4.39 -104.62 -0.46 -1.29 16 8 C -0.06 -0.78 3.58 -27.88 -0.10 -0.88 16 9 C -0.10 -1.35 1.82 -91.77 -0.17 -1.52 16 10 H 0.09 1.13 5.92 -51.93 -0.31 0.83 16 11 C -0.14 -1.76 8.43 37.16 0.31 -1.44 16 12 C 0.51 8.97 6.99 -10.99 -0.08 8.90 16 13 O -0.56 -11.65 15.48 5.56 0.09 -11.57 16 14 N -0.59 -10.95 2.26 -170.53 -0.39 -11.33 16 15 C 0.10 1.61 4.45 -2.52 -0.01 1.60 16 16 C 0.13 2.46 4.27 -65.66 -0.28 2.18 16 17 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.12 -2.06 6.19 -25.25 -0.16 -2.21 16 19 C -0.14 -2.60 6.18 -25.25 -0.16 -2.75 16 20 C 0.17 3.74 3.15 -65.68 -0.21 3.53 16 21 H 0.12 3.08 6.27 -51.93 -0.33 2.75 16 22 C 0.11 2.43 5.84 -3.24 -0.02 2.41 16 23 N -0.58 -13.55 2.81 -152.61 -0.43 -13.98 16 24 C -0.23 -5.81 10.37 -15.06 -0.16 -5.96 16 25 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 26 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 27 N -0.91 -24.91 10.46 55.49 0.58 -24.33 16 28 Si 0.91 21.06 29.57 -169.99 -5.03 16.04 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 32 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.74 6.15 -51.93 -0.32 0.42 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 39 H 0.08 1.04 7.97 -51.93 -0.41 0.62 16 40 H 0.08 1.07 6.36 -51.93 -0.33 0.74 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.70 7.09 -51.93 -0.37 0.33 16 43 H 0.06 0.84 6.14 -51.93 -0.32 0.52 16 44 H 0.07 0.91 5.48 -51.93 -0.28 0.62 16 45 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 0.77 7.86 -51.93 -0.41 0.37 16 48 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 49 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.08 1.91 7.91 -51.93 -0.41 1.49 16 51 H 0.07 1.52 7.09 -51.92 -0.37 1.16 16 52 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -29.08 393.35 -11.07 -40.15 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.43 Total: 5.13 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.40 Total: -6.04 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.23 Total: -49.64 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.08 -11.07 -40.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029601970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.769 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds