Wall clock time and date at job start Wed Apr 1 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47163 * 2 1 4 4 C 1.38245 * 119.99558 * 90.00149 * 3 2 1 5 5 C 1.38234 * 119.99858 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99802 * 359.95895 * 5 4 3 7 7 C 1.50703 * 119.99640 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47114 * 307.02485 * 7 6 5 9 9 C 1.52991 * 109.47356 * 67.02638 * 7 6 5 10 10 C 1.50707 * 109.47031 * 187.02755 * 7 6 5 11 11 O 1.21274 * 119.99726 * 238.94745 * 10 7 6 12 12 N 1.34780 * 119.99566 * 58.95021 * 10 7 6 13 13 C 1.47864 * 126.95080 * 4.64905 * 12 10 7 14 14 C 1.56013 * 105.10733 * 181.98289 * 13 12 10 15 15 H 1.08994 * 116.25322 * 158.84145 * 14 13 12 16 16 C 1.57081 * 99.60626 * 32.80889 * 14 13 12 17 17 C 1.49298 * 126.93869 * 184.34325 * 12 10 7 18 18 H 1.09004 * 116.15128 * 16.72226 * 17 12 10 19 19 C 1.56014 * 104.08646 * 246.71833 * 17 12 10 20 20 N 1.49252 * 105.36694 * 288.93363 * 19 17 12 21 21 C 1.36936 * 127.75387 * 182.19354 * 20 19 17 22 22 H 1.07995 * 120.00114 * 179.51651 * 21 20 19 23 23 C 1.38809 * 119.99884 * 359.50741 * 21 20 19 24 24 N 1.31627 * 119.99961 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00320 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47211 * 90.00119 * 25 23 21 27 27 H 1.48495 * 109.47383 * 210.00559 * 25 23 21 28 28 H 1.48504 * 109.46907 * 330.00137 * 25 23 21 29 29 C 1.38237 * 120.00293 * 0.27351 * 6 5 4 30 30 C 1.38227 * 120.00554 * 269.97975 * 3 2 1 31 31 H 1.09000 * 109.47271 * 59.99456 * 1 2 3 32 32 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47099 * 299.99786 * 1 2 3 34 34 H 1.09004 * 109.47191 * 240.00989 * 2 1 3 35 35 H 1.08997 * 109.47318 * 120.00024 * 2 1 3 36 36 H 1.07994 * 120.00259 * 359.97438 * 4 3 2 37 37 H 1.07996 * 120.00203 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46876 * 69.90253 * 8 7 6 39 39 H 1.08997 * 109.47166 * 189.90596 * 8 7 6 40 40 H 1.09000 * 109.46967 * 309.90012 * 8 7 6 41 41 H 1.08997 * 109.47340 * 53.94423 * 9 7 6 42 42 H 1.09006 * 109.47512 * 173.94301 * 9 7 6 43 43 H 1.09003 * 109.47555 * 293.93873 * 9 7 6 44 44 H 1.08997 * 110.31713 * 300.89315 * 13 12 10 45 45 H 1.09006 * 110.31036 * 62.97841 * 13 12 10 46 46 H 1.08997 * 112.36684 * 64.27134 * 16 14 13 47 47 H 1.08999 * 112.37118 * 191.71452 * 16 14 13 48 48 H 1.08994 * 110.32254 * 47.67710 * 19 17 12 49 49 H 1.09008 * 110.30888 * 169.76334 * 19 17 12 50 50 H 0.97002 * 119.99696 * 179.97438 * 24 23 21 51 51 H 1.07997 * 119.99573 * 179.72763 * 29 6 5 52 52 H 1.08001 * 120.00210 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1973 5 6 2.7230 3.3759 1.1974 6 6 2.9537 4.0275 0.0002 7 6 3.4561 5.4483 0.0003 8 6 2.5400 6.3131 0.8687 9 6 4.8780 5.4865 0.5637 10 6 3.4600 5.9799 -1.4099 11 8 4.4946 6.3702 -1.9078 12 7 2.3136 6.0214 -2.1175 13 6 0.9586 5.6782 -1.6354 14 6 0.0288 5.8552 -2.8757 15 1 -0.9233 5.3256 -2.8440 16 6 1.0271 5.4355 -4.0136 17 6 2.1546 6.4292 -3.5449 18 1 3.0657 6.4501 -4.1429 19 6 1.3274 7.7500 -3.4724 20 7 -0.0469 7.3341 -3.0651 21 6 -1.1506 8.1289 -2.9052 22 1 -2.0932 7.6912 -2.6114 23 6 -1.0577 9.4970 -3.1205 24 7 0.0911 10.0304 -3.4788 25 14 -2.5630 10.5813 -2.9017 26 1 -2.6297 11.0581 -1.4969 27 1 -2.4702 11.7475 -3.8163 28 1 -3.7858 9.8003 -3.2179 29 6 2.7188 3.3775 -1.1970 30 6 2.2632 2.0724 -1.1970 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0824 1.5634 2.1325 37 1 2.9027 3.8851 2.1327 38 1 2.6707 6.0421 1.9164 39 1 2.7944 7.3639 0.7307 40 1 1.5025 6.1492 0.5776 41 1 5.5065 4.7880 0.0114 42 1 5.2812 6.4944 0.4647 43 1 4.8595 5.2045 1.6164 44 1 0.9312 4.6461 -1.2862 45 1 0.6586 6.3557 -0.8359 46 1 1.3309 4.3918 -3.9347 47 1 0.6491 5.6774 -5.0070 48 1 1.7512 8.4217 -2.7259 49 1 1.3041 8.2359 -4.4480 50 1 0.1559 10.9864 -3.6296 51 1 2.8948 3.8882 -2.1322 52 1 2.0831 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032720981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:03 Heat of formation + Delta-G solvation = 43.544367 kcal Electronic energy + Delta-G solvation = -31928.256969 eV Core-core repulsion = 28087.180377 eV Total energy + Delta-G solvation = -3841.076592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.92836 -39.25403 -38.03157 -35.61942 -33.56421 -33.16656 -31.57202 -30.82626 -29.06092 -28.79738 -28.48730 -27.04118 -25.28375 -24.61830 -23.79369 -22.93017 -21.86594 -20.98663 -19.95396 -19.53283 -18.34910 -17.45567 -16.56014 -16.04228 -15.78388 -15.35673 -15.14063 -14.59526 -14.49318 -14.05223 -13.95253 -13.72363 -13.62311 -13.44098 -13.40496 -13.07306 -12.68550 -12.55704 -12.46770 -12.15466 -11.96093 -11.85036 -11.74794 -11.48940 -11.42523 -11.35817 -11.26919 -11.07187 -10.98920 -10.86991 -10.85491 -10.66688 -10.59256 -10.54620 -10.19024 -10.05163 -9.61759 -9.30252 -8.86813 -8.71655 -8.48678 -7.93869 -6.91344 -5.77007 -3.10565 1.30677 1.41641 3.02969 3.36802 3.39926 3.41732 3.44295 3.71967 4.41712 4.55839 4.59441 4.74395 4.79077 4.97506 5.02132 5.09680 5.15977 5.19648 5.21698 5.26799 5.36876 5.37905 5.45466 5.51323 5.57343 5.64726 5.69339 5.71115 5.74809 5.79058 5.85066 5.88288 5.89520 5.98626 6.02129 6.05305 6.07788 6.16422 6.26839 6.29666 6.37986 6.40635 6.45897 6.52877 6.59666 6.60455 6.63499 6.73623 6.99194 7.40235 7.47083 7.70187 8.06805 8.12515 8.60253 9.08082 9.70814 10.41574 11.36028 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003734 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.347344 B = 7496.043139 C = 8364.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.070 4.070 7 C -0.038 4.038 8 C -0.145 4.145 9 C -0.121 4.121 10 C 0.539 3.461 11 O -0.552 6.552 12 N -0.601 5.601 13 C 0.077 3.923 14 C 0.139 3.861 15 H 0.102 0.898 16 C -0.152 4.152 17 C 0.097 3.903 18 H 0.113 0.887 19 C 0.174 3.826 20 N -0.596 5.596 21 C -0.229 4.229 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.107 4.107 30 C -0.115 4.115 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.253 0.747 51 H 0.128 0.872 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -18.391 8.271 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.137 4.137 5 C -0.124 4.124 6 C -0.070 4.070 7 C -0.041 4.041 8 C -0.202 4.202 9 C -0.178 4.178 10 C 0.327 3.673 11 O -0.430 6.430 12 N -0.334 5.334 13 C -0.048 4.048 14 C 0.030 3.970 15 H 0.120 0.880 16 C -0.191 4.191 17 C -0.005 4.005 18 H 0.131 0.869 19 C 0.049 3.951 20 N -0.321 5.321 21 C -0.357 4.357 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.125 4.125 30 C -0.133 4.133 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.146 0.854 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.540 -17.874 8.038 20.117 hybrid contribution -0.796 0.814 0.169 1.151 sum 3.744 -17.060 8.207 19.298 Atomic orbital electron populations 1.21750 0.94683 1.01519 1.02474 1.20522 0.96226 0.92784 1.02532 1.19865 0.99366 0.96167 0.93237 1.20917 1.00680 0.94790 0.97354 1.20874 0.99570 0.94616 0.97312 1.19522 0.99584 0.94306 0.93588 1.19731 0.98063 0.92469 0.93839 1.22041 1.00004 0.99523 0.98658 1.21648 0.93227 1.03228 0.99702 1.19862 0.82434 0.78182 0.86772 1.90656 1.31601 1.49385 1.71397 1.49213 1.06690 1.64760 1.12757 1.23612 0.82280 0.99121 0.99740 1.23151 0.95120 0.87598 0.91091 0.88025 1.24219 0.97381 0.97409 1.00132 1.24391 0.97507 0.97618 0.80990 0.86941 1.22099 0.82936 0.89986 1.00050 1.45516 1.06909 0.99829 1.79837 1.19020 0.87859 0.88432 1.40371 0.90178 1.24799 0.97095 0.96667 1.01662 1.69909 1.23105 1.11113 1.52417 0.86139 0.81908 0.80335 0.77464 1.21648 1.21713 1.20664 1.21345 0.98265 0.94640 0.98213 1.20962 1.00295 0.94622 0.97471 0.92339 0.92609 0.92530 0.91229 0.91315 0.86345 0.86091 0.91728 0.91675 0.90748 0.92169 0.91390 0.92200 0.92007 0.90773 0.91685 0.89889 0.93358 0.92773 0.93626 0.85379 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 5 C -0.11 -1.18 8.94 -39.58 -0.35 -1.54 16 6 C -0.07 -0.91 3.80 -104.62 -0.40 -1.31 16 7 C -0.04 -0.55 0.59 -156.81 -0.09 -0.64 16 8 C -0.15 -2.01 7.69 37.16 0.29 -1.72 16 9 C -0.12 -1.60 7.67 37.15 0.28 -1.32 16 10 C 0.54 9.84 5.30 -10.98 -0.06 9.78 16 11 O -0.55 -11.79 16.26 5.56 0.09 -11.70 16 12 N -0.60 -10.85 1.79 -156.56 -0.28 -11.12 16 13 C 0.08 1.32 4.37 -1.68 -0.01 1.31 16 14 C 0.14 2.57 5.47 -62.55 -0.34 2.23 16 15 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 16 C -0.15 -2.53 6.84 -22.10 -0.15 -2.68 16 17 C 0.10 1.86 5.25 -62.35 -0.33 1.53 16 18 H 0.11 2.10 8.08 -51.93 -0.42 1.68 16 19 C 0.17 4.14 4.83 -0.90 0.00 4.14 16 20 N -0.60 -14.19 3.07 -155.23 -0.48 -14.67 16 21 C -0.23 -6.05 10.38 -15.06 -0.16 -6.21 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -26.71 10.69 55.49 0.59 -26.11 16 25 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 C -0.11 -1.43 6.55 -39.58 -0.26 -1.69 16 30 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.16 7.35 -52.49 -0.39 0.77 16 38 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 39 H 0.06 1.00 8.11 -51.93 -0.42 0.57 16 40 H 0.07 1.09 5.02 -51.93 -0.26 0.83 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 43 H 0.06 0.64 8.02 -51.93 -0.42 0.22 16 44 H 0.06 0.94 5.19 -51.93 -0.27 0.67 16 45 H 0.07 1.41 6.06 -51.93 -0.31 1.09 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.05 1.33 7.72 -51.93 -0.40 0.93 16 49 H 0.05 1.42 7.53 -51.92 -0.39 1.03 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.13 1.93 5.67 -52.49 -0.30 1.63 16 52 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -30.91 395.78 -10.48 -41.38 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.56 Total: 4.33 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.78 Total: -4.70 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.16 Total: -51.91 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.91 -10.48 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032720981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.926 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds