Wall clock time and date at job start Wed Apr 1 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47163 * 2 1 4 4 C 1.38245 * 119.99558 * 90.00149 * 3 2 1 5 5 C 1.38234 * 119.99858 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99802 * 359.95895 * 5 4 3 7 7 C 1.50703 * 119.99640 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47114 * 307.02485 * 7 6 5 9 9 C 1.52991 * 109.47356 * 67.02638 * 7 6 5 10 10 C 1.50707 * 109.47031 * 187.02755 * 7 6 5 11 11 O 1.21274 * 119.99726 * 238.94745 * 10 7 6 12 12 N 1.34780 * 119.99566 * 58.95021 * 10 7 6 13 13 C 1.47864 * 126.95080 * 4.64905 * 12 10 7 14 14 C 1.56013 * 105.10733 * 181.98289 * 13 12 10 15 15 H 1.08994 * 116.25322 * 158.84145 * 14 13 12 16 16 C 1.57081 * 99.60626 * 32.80889 * 14 13 12 17 17 C 1.49298 * 126.93869 * 184.34325 * 12 10 7 18 18 H 1.09004 * 116.15128 * 16.72226 * 17 12 10 19 19 C 1.56014 * 104.08646 * 246.71833 * 17 12 10 20 20 N 1.49252 * 105.36694 * 288.93363 * 19 17 12 21 21 C 1.36936 * 127.75387 * 182.19354 * 20 19 17 22 22 H 1.07995 * 120.00114 * 179.51651 * 21 20 19 23 23 C 1.38809 * 119.99884 * 359.50741 * 21 20 19 24 24 N 1.31627 * 119.99961 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00320 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47211 * 90.00119 * 25 23 21 27 27 H 1.48495 * 109.47383 * 210.00559 * 25 23 21 28 28 H 1.48504 * 109.46907 * 330.00137 * 25 23 21 29 29 C 1.38237 * 120.00293 * 0.27351 * 6 5 4 30 30 C 1.38227 * 120.00554 * 269.97975 * 3 2 1 31 31 H 1.09000 * 109.47271 * 59.99456 * 1 2 3 32 32 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47099 * 299.99786 * 1 2 3 34 34 H 1.09004 * 109.47191 * 240.00989 * 2 1 3 35 35 H 1.08997 * 109.47318 * 120.00024 * 2 1 3 36 36 H 1.07994 * 120.00259 * 359.97438 * 4 3 2 37 37 H 1.07996 * 120.00203 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46876 * 69.90253 * 8 7 6 39 39 H 1.08997 * 109.47166 * 189.90596 * 8 7 6 40 40 H 1.09000 * 109.46967 * 309.90012 * 8 7 6 41 41 H 1.08997 * 109.47340 * 53.94423 * 9 7 6 42 42 H 1.09006 * 109.47512 * 173.94301 * 9 7 6 43 43 H 1.09003 * 109.47555 * 293.93873 * 9 7 6 44 44 H 1.08997 * 110.31713 * 300.89315 * 13 12 10 45 45 H 1.09006 * 110.31036 * 62.97841 * 13 12 10 46 46 H 1.08997 * 112.36684 * 64.27134 * 16 14 13 47 47 H 1.08999 * 112.37118 * 191.71452 * 16 14 13 48 48 H 1.08994 * 110.32254 * 47.67710 * 19 17 12 49 49 H 1.09008 * 110.30888 * 169.76334 * 19 17 12 50 50 H 0.97002 * 119.99696 * 179.97438 * 24 23 21 51 51 H 1.07997 * 119.99573 * 179.72763 * 29 6 5 52 52 H 1.08001 * 120.00210 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1973 5 6 2.7230 3.3759 1.1974 6 6 2.9537 4.0275 0.0002 7 6 3.4561 5.4483 0.0003 8 6 2.5400 6.3131 0.8687 9 6 4.8780 5.4865 0.5637 10 6 3.4600 5.9799 -1.4099 11 8 4.4946 6.3702 -1.9078 12 7 2.3136 6.0214 -2.1175 13 6 0.9586 5.6782 -1.6354 14 6 0.0288 5.8552 -2.8757 15 1 -0.9233 5.3256 -2.8440 16 6 1.0271 5.4355 -4.0136 17 6 2.1546 6.4292 -3.5449 18 1 3.0657 6.4501 -4.1429 19 6 1.3274 7.7500 -3.4724 20 7 -0.0469 7.3341 -3.0651 21 6 -1.1506 8.1289 -2.9052 22 1 -2.0932 7.6912 -2.6114 23 6 -1.0577 9.4970 -3.1205 24 7 0.0911 10.0304 -3.4788 25 14 -2.5630 10.5813 -2.9017 26 1 -2.6297 11.0581 -1.4969 27 1 -2.4702 11.7475 -3.8163 28 1 -3.7858 9.8003 -3.2179 29 6 2.7188 3.3775 -1.1970 30 6 2.2632 2.0724 -1.1970 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0824 1.5634 2.1325 37 1 2.9027 3.8851 2.1327 38 1 2.6707 6.0421 1.9164 39 1 2.7944 7.3639 0.7307 40 1 1.5025 6.1492 0.5776 41 1 5.5065 4.7880 0.0114 42 1 5.2812 6.4944 0.4647 43 1 4.8595 5.2045 1.6164 44 1 0.9312 4.6461 -1.2862 45 1 0.6586 6.3557 -0.8359 46 1 1.3309 4.3918 -3.9347 47 1 0.6491 5.6774 -5.0070 48 1 1.7512 8.4217 -2.7259 49 1 1.3041 8.2359 -4.4480 50 1 0.1559 10.9864 -3.6296 51 1 2.8948 3.8882 -2.1322 52 1 2.0831 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032720981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:02 Heat of formation + Delta-G solvation = 28.651867 kcal Electronic energy + Delta-G solvation = -31928.902756 eV Core-core repulsion = 28087.180377 eV Total energy + Delta-G solvation = -3841.722379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.24413 -40.44540 -39.41075 -36.72563 -35.40986 -33.98231 -33.25551 -31.79120 -30.71595 -30.21495 -29.59942 -28.18906 -26.98655 -25.99587 -24.88053 -24.09002 -22.96077 -22.04168 -21.43507 -20.95615 -19.87519 -18.86821 -18.16891 -17.52847 -16.93915 -16.74715 -16.15808 -16.00904 -15.76664 -15.53869 -15.14304 -15.04058 -14.58182 -14.49992 -14.35461 -14.08100 -13.99892 -13.89560 -13.67813 -13.44596 -13.31367 -13.19352 -13.14211 -12.92293 -12.78146 -12.70894 -12.52118 -12.37308 -12.26609 -12.15282 -12.14535 -12.06041 -11.98111 -11.73200 -11.61430 -11.50485 -11.47499 -10.87997 -10.63601 -9.74089 -9.50238 -9.35375 -8.89670 -7.85157 -5.20026 0.44343 0.56582 1.46254 1.47559 1.56173 1.58878 1.97051 2.47859 2.86342 3.28141 3.34097 3.44866 3.58575 3.72002 3.88965 3.95960 4.00406 4.01175 4.06292 4.11227 4.17970 4.22085 4.41378 4.50416 4.59579 4.61592 4.64198 4.66747 4.68184 4.77853 4.79803 4.81863 4.83345 4.91563 4.95035 4.99282 5.08588 5.11310 5.15060 5.17640 5.19010 5.21824 5.28097 5.30734 5.43188 5.48003 5.51538 5.59570 5.62727 5.72177 5.80715 6.06928 6.15994 6.65216 6.99991 7.13274 7.69158 8.42207 9.27116 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003734 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.347344 B = 7496.043139 C = 8364.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.083 4.083 7 C -0.031 4.031 8 C -0.141 4.141 9 C -0.117 4.117 10 C 0.532 3.468 11 O -0.592 6.592 12 N -0.600 5.600 13 C 0.093 3.907 14 C 0.133 3.867 15 H 0.128 0.872 16 C -0.127 4.127 17 C 0.099 3.901 18 H 0.113 0.887 19 C 0.188 3.812 20 N -0.614 5.614 21 C -0.227 4.227 22 H 0.095 0.905 23 C -0.070 4.070 24 N -0.957 5.957 25 Si 0.976 3.024 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.262 1.262 29 C -0.125 4.125 30 C -0.119 4.119 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.101 0.899 47 H 0.081 0.919 48 H -0.003 1.003 49 H 0.017 0.983 50 H 0.243 0.757 51 H 0.107 0.893 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -22.264 10.320 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.123 4.123 6 C -0.083 4.083 7 C -0.034 4.034 8 C -0.198 4.198 9 C -0.174 4.174 10 C 0.322 3.678 11 O -0.473 6.473 12 N -0.332 5.332 13 C -0.031 4.031 14 C 0.026 3.974 15 H 0.146 0.854 16 C -0.167 4.167 17 C -0.004 4.004 18 H 0.131 0.869 19 C 0.063 3.937 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.113 0.887 23 C -0.263 4.263 24 N -0.606 5.606 25 Si 0.805 3.195 26 H -0.218 1.218 27 H -0.229 1.229 28 H -0.186 1.186 29 C -0.143 4.143 30 C -0.137 4.137 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.100 0.900 48 H 0.015 0.985 49 H 0.036 0.964 50 H 0.052 0.948 51 H 0.125 0.875 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.054 -21.812 10.105 24.232 hybrid contribution -0.315 1.928 -0.442 2.003 sum 2.739 -19.884 9.662 22.276 Atomic orbital electron populations 1.21738 0.94359 1.02266 1.01942 1.20570 0.96359 0.91367 1.03599 1.20178 0.98229 0.97203 0.92832 1.21253 0.99411 0.94363 0.98445 1.21074 0.98976 0.95088 0.97115 1.19401 1.01096 0.93270 0.94569 1.19703 0.99051 0.93734 0.90899 1.22021 0.99189 0.97923 1.00639 1.21647 0.92245 1.01987 1.01562 1.20698 0.81672 0.77259 0.88169 1.90625 1.32979 1.51132 1.72608 1.49235 1.07329 1.64399 1.12216 1.23423 0.81158 1.00230 0.98319 1.23540 0.96987 0.84572 0.92264 0.85411 1.24105 0.94878 0.98445 0.99223 1.24217 0.97813 0.95891 0.82476 0.86869 1.21699 0.84169 0.91490 0.96370 1.45738 1.06094 1.02385 1.79705 1.19509 0.89017 0.88883 1.38194 0.88707 1.25633 0.99616 0.98335 1.02672 1.70154 1.25313 1.10483 1.54700 0.85105 0.79422 0.78249 0.76734 1.21761 1.22895 1.18646 1.21235 1.00014 0.95660 0.97429 1.21114 1.00015 0.93890 0.98704 0.93187 0.91308 0.92725 0.90630 0.89886 0.83767 0.84190 0.88207 0.94206 0.91561 0.92965 0.93240 0.88826 0.88971 0.92706 0.88073 0.90010 0.98504 0.96432 0.94779 0.87537 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.08 -1.42 5.13 -19.86 -0.10 -1.52 16 4 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 5 C -0.10 -1.96 8.94 22.27 0.20 -1.76 16 6 C -0.08 -2.00 3.80 -19.86 -0.08 -2.07 16 7 C -0.03 -0.88 0.59 -53.67 -0.03 -0.91 16 8 C -0.14 -3.78 7.69 71.98 0.55 -3.23 16 9 C -0.12 -3.03 7.67 71.98 0.55 -2.48 16 10 C 0.53 19.94 5.30 87.66 0.46 20.41 16 11 O -0.59 -26.56 16.26 -3.01 -0.05 -26.60 16 12 N -0.60 -22.03 1.79 -767.63 -1.37 -23.40 16 13 C 0.09 3.09 4.37 87.16 0.38 3.47 16 14 C 0.13 4.74 5.47 46.93 0.26 4.99 16 15 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 16 C -0.13 -4.07 6.84 33.59 0.23 -3.84 16 17 C 0.10 3.92 5.25 47.06 0.25 4.16 16 18 H 0.11 4.43 8.08 -2.38 -0.02 4.41 16 19 C 0.19 9.53 4.83 86.89 0.42 9.95 16 20 N -0.61 -29.80 3.07 -645.01 -1.98 -31.78 16 21 C -0.23 -12.12 10.38 84.03 0.87 -11.25 16 22 H 0.10 4.67 7.83 -2.91 -0.02 4.65 16 23 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 24 N -0.96 -58.83 10.69 21.65 0.23 -58.60 16 25 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 29 C -0.13 -3.11 6.55 22.27 0.15 -2.96 16 30 C -0.12 -2.39 9.70 22.27 0.22 -2.18 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 35 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 36 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.14 2.04 7.35 -2.91 -0.02 2.02 16 38 H 0.10 1.94 7.37 -2.39 -0.02 1.92 16 39 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 40 H 0.07 1.89 5.02 -2.39 -0.01 1.87 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.44 7.90 -2.38 -0.02 1.42 16 43 H 0.09 1.75 8.02 -2.39 -0.02 1.73 16 44 H 0.09 2.58 5.19 -2.39 -0.01 2.57 16 45 H 0.05 2.08 6.06 -2.38 -0.01 2.06 16 46 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.00 -0.20 7.72 -2.39 -0.02 -0.22 16 49 H 0.02 1.00 7.53 -2.38 -0.02 0.98 16 50 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 51 H 0.11 3.09 5.67 -2.91 -0.02 3.08 16 52 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -72.25 395.78 5.66 -66.59 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.90 Total: 22.45 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.90 Total: 3.85 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.12 Total: -113.78 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.25 5.66 -66.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032720981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.241 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds