Wall clock time and date at job start Wed Apr 1 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99874 * 2 1 4 4 O 1.21287 * 119.99778 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00485 * 359.97438 * 3 2 1 6 6 H 1.09000 * 115.54581 * 331.53853 * 5 3 2 7 7 C 1.52992 * 117.49712 * 185.86362 * 5 3 2 8 8 H 1.09000 * 117.50433 * 0.02562 * 7 5 3 9 9 C 1.50708 * 117.49770 * 144.99968 * 7 5 3 10 10 C 1.38236 * 119.99783 * 8.33327 * 9 7 5 11 11 C 1.38232 * 120.00041 * 179.76684 * 10 9 7 12 12 C 1.38238 * 119.99832 * 0.50456 * 11 10 9 13 13 C 1.38238 * 119.99872 * 359.75040 * 12 11 10 14 14 C 1.38229 * 120.00082 * 188.60377 * 9 7 5 15 15 C 1.52993 * 117.49588 * 117.24112 * 5 3 2 16 16 C 1.53006 * 117.49495 * 214.98267 * 15 5 3 17 17 C 1.53001 * 117.50072 * 0.02562 * 15 5 3 18 18 C 1.46500 * 119.99821 * 180.02562 * 2 1 3 19 19 H 1.08994 * 110.64395 * 180.70032 * 18 2 1 20 20 C 1.55159 * 110.72167 * 57.55580 * 18 2 1 21 21 C 1.55395 * 101.36208 * 277.04333 * 20 18 2 22 22 N 1.47422 * 104.87814 * 323.01725 * 21 20 18 23 23 C 1.36936 * 125.64781 * 204.17561 * 22 21 20 24 24 H 1.08004 * 119.99709 * 179.97438 * 23 22 21 25 25 C 1.38806 * 120.00044 * 359.94947 * 23 22 21 26 26 N 1.31620 * 119.99937 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99848 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47257 * 60.00494 * 27 25 23 29 29 H 1.48505 * 109.47058 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47394 * 300.00039 * 27 25 23 31 31 C 1.47023 * 108.70262 * 24.13167 * 22 21 20 32 32 H 1.08995 * 109.47189 * 89.99667 * 1 2 3 33 33 H 1.08995 * 109.47191 * 210.00379 * 1 2 3 34 34 H 1.09004 * 109.47007 * 330.00050 * 1 2 3 35 35 H 1.08003 * 119.99917 * 359.97438 * 10 9 7 36 36 H 1.07998 * 120.00208 * 180.22903 * 11 10 9 37 37 H 1.07994 * 120.00203 * 179.72067 * 12 11 10 38 38 H 1.08000 * 119.99941 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.00344 * 0.02562 * 14 9 7 40 40 H 1.08998 * 109.47065 * 111.39496 * 16 15 5 41 41 H 1.09005 * 109.46839 * 231.39438 * 16 15 5 42 42 H 1.08997 * 109.47210 * 351.38894 * 16 15 5 43 43 H 1.08999 * 109.47196 * 64.00970 * 17 15 5 44 44 H 1.09010 * 109.46857 * 184.00490 * 17 15 5 45 45 H 1.09000 * 109.47395 * 304.00412 * 17 15 5 46 46 H 1.08993 * 111.00217 * 35.21062 * 20 18 2 47 47 H 1.08997 * 111.00464 * 159.06690 * 20 18 2 48 48 H 1.09000 * 110.33594 * 204.16743 * 21 20 18 49 49 H 1.08994 * 110.43980 * 81.92310 * 21 20 18 50 50 H 0.97006 * 119.99679 * 179.97438 * 26 25 23 51 51 H 1.08996 * 109.88581 * 239.52799 * 31 22 21 52 52 H 1.08995 * 110.00880 * 118.43185 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4724 -0.0006 6 1 0.4019 2.4471 -0.4696 7 6 2.2015 3.7590 -0.1392 8 1 3.2833 3.6616 -0.2304 9 6 1.5839 4.8947 -0.9139 10 6 0.2645 4.8179 -1.3190 11 6 -0.3034 5.8617 -2.0254 12 6 0.4511 6.9776 -2.3356 13 6 1.7720 7.0521 -1.9350 14 6 2.3384 6.0106 -1.2241 15 6 1.5698 3.3949 1.2059 16 6 0.3592 4.2118 1.6620 17 6 2.5055 2.9222 2.3203 18 6 2.1975 -1.2687 -0.0006 19 1 3.2729 -1.0916 0.0120 20 6 1.7977 -2.1329 -1.2257 21 6 0.4957 -2.8081 -0.7122 22 7 0.7468 -3.0782 0.7151 23 6 0.1266 -4.0405 1.4664 24 1 0.3823 -4.1597 2.5090 25 6 -0.8310 -4.8623 0.8883 26 7 -1.1425 -4.7170 -0.3823 27 14 -1.6776 -6.1744 1.9134 28 1 -2.3921 -5.5331 3.0463 29 1 -2.6505 -6.9120 1.0679 30 1 -0.6630 -7.1218 2.4407 31 6 1.7743 -2.1440 1.1980 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 -0.3236 3.9440 -1.0808 36 1 -1.3353 5.8033 -2.3387 37 1 0.0087 7.7911 -2.8914 38 1 2.3616 7.9237 -2.1778 39 1 3.3706 6.0685 -0.9117 40 1 0.0168 3.8446 2.6295 41 1 0.6413 5.2610 1.7507 42 1 -0.4430 4.1118 0.9309 43 1 3.5210 2.8421 1.9326 44 1 2.4853 3.6399 3.1405 45 1 2.1767 1.9479 2.6819 46 1 1.6004 -1.5082 -2.0967 47 1 2.5634 -2.8768 -1.4456 48 1 0.3152 -3.7397 -1.2486 49 1 -0.3533 -2.1344 -0.8272 50 1 -1.8115 -5.2916 -0.7864 51 1 2.6338 -2.6996 1.5729 52 1 1.3651 -1.5161 1.9894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033088559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:14 Heat of formation + Delta-G solvation = 49.855855 kcal Electronic energy + Delta-G solvation = -30634.615222 eV Core-core repulsion = 26793.812316 eV Total energy + Delta-G solvation = -3840.802905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.82327 -39.39378 -37.99069 -36.70284 -34.36616 -32.10355 -31.51724 -31.11999 -29.52143 -28.95883 -27.93252 -27.53916 -26.17504 -24.93734 -24.01594 -22.70980 -22.01797 -20.20360 -19.87024 -19.27165 -18.29106 -17.54969 -16.95750 -16.50342 -15.92873 -15.40858 -15.21221 -14.99676 -14.69319 -14.24024 -14.19692 -13.91491 -13.76338 -13.58063 -13.40122 -12.85809 -12.81807 -12.69434 -12.45509 -12.38671 -12.20031 -12.17940 -11.93214 -11.75958 -11.61607 -11.56885 -11.20624 -11.08880 -11.04439 -10.89692 -10.82153 -10.46296 -10.31737 -10.16957 -9.98110 -9.87306 -9.56049 -9.38164 -9.11134 -8.68531 -8.68161 -8.22094 -6.87658 -5.68915 -3.11066 1.10351 1.20176 2.60717 3.21936 3.38040 3.42781 3.43602 3.46059 3.94706 4.30143 4.46165 4.51988 4.59628 4.70525 4.78712 4.80939 4.93035 4.98207 5.04848 5.28795 5.37606 5.42042 5.42423 5.45066 5.49883 5.50359 5.56517 5.70363 5.72670 5.77308 5.80671 5.84775 5.85449 5.87403 5.92566 5.94963 6.03356 6.21916 6.24185 6.30033 6.31327 6.31420 6.37820 6.46341 6.56222 6.60225 6.71334 6.79227 7.05113 7.45144 7.58917 7.75336 7.82449 8.32127 8.44731 9.18211 9.78672 10.43276 11.34371 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002510 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.370372 B =11153.090174 C =11413.243326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.589 5.589 3 C 0.545 3.455 4 O -0.550 6.550 5 C -0.176 4.176 6 H 0.124 0.876 7 C -0.082 4.082 8 H 0.125 0.875 9 C -0.044 4.044 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.127 4.127 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.078 4.078 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.126 3.874 19 H 0.098 0.902 20 C -0.156 4.156 21 C 0.146 3.854 22 N -0.602 5.602 23 C -0.223 4.223 24 H 0.076 0.924 25 C -0.010 4.010 26 N -0.922 5.922 27 Si 0.914 3.086 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.285 1.285 31 C 0.128 3.872 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.021 0.979 50 H 0.252 0.748 51 H 0.032 0.968 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 22.692 -1.511 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.320 5.320 3 C 0.333 3.667 4 O -0.429 6.429 5 C -0.197 4.197 6 H 0.142 0.858 7 C -0.101 4.101 8 H 0.143 0.857 9 C -0.044 4.044 10 C -0.136 4.136 11 C -0.135 4.135 12 C -0.145 4.145 13 C -0.137 4.137 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.175 4.175 17 C -0.176 4.176 18 C 0.023 3.977 19 H 0.116 0.884 20 C -0.195 4.195 21 C 0.022 3.978 22 N -0.329 5.329 23 C -0.351 4.351 24 H 0.094 0.906 25 C -0.205 4.205 26 N -0.570 5.570 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 C 0.001 3.999 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.039 0.961 50 H 0.063 0.937 51 H 0.050 0.950 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.281 22.485 -1.527 22.774 hybrid contribution -0.674 -0.768 0.342 1.077 sum 2.607 21.717 -1.185 21.905 Atomic orbital electron populations 1.22065 0.79196 1.04061 1.01843 1.47686 1.07303 1.05307 1.71675 1.19476 0.87200 0.84198 0.75849 1.90635 1.13791 1.87299 1.51194 1.22705 1.01501 0.89877 1.05626 0.85845 1.21362 0.99259 0.91615 0.97833 0.85685 1.19117 0.93700 0.94259 0.97289 1.21115 0.94882 0.98916 0.98669 1.21131 0.99906 0.93860 0.98601 1.21136 0.94513 0.98292 1.00598 1.21116 0.95390 0.98626 0.98541 1.20957 0.99910 0.93292 0.98819 1.21630 0.98719 0.98573 0.88982 1.21446 0.95351 0.99141 1.01522 1.21412 0.98901 1.00995 0.96331 1.22135 0.96388 0.82137 0.97072 0.88358 1.23435 1.01679 0.98384 0.96012 1.22177 0.90334 1.00295 0.85003 1.44525 1.43912 1.37035 1.07397 1.19020 1.15312 1.07854 0.92940 0.90585 1.24769 0.99530 0.99847 0.96367 1.69791 1.35501 1.41248 1.10490 0.86161 0.79048 0.81437 0.78881 1.21246 1.21598 1.21187 1.21619 0.92811 0.91375 0.94088 0.92874 0.88048 0.92142 0.85935 0.86064 0.86282 0.86138 0.85993 0.91703 0.91740 0.91956 0.91238 0.91905 0.91922 0.92103 0.91105 0.87735 0.96135 0.93680 0.95034 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 8.04 59.85 0.48 1.59 16 2 N -0.59 -9.87 2.82 -171.83 -0.49 -10.36 16 3 C 0.54 8.77 6.58 -10.99 -0.07 8.70 16 4 O -0.55 -10.26 14.85 5.55 0.08 -10.18 16 5 C -0.18 -2.22 3.96 -91.78 -0.36 -2.58 16 6 H 0.12 1.40 4.91 -51.93 -0.25 1.14 16 7 C -0.08 -0.95 5.20 -91.77 -0.48 -1.43 16 8 H 0.13 1.60 7.57 -51.93 -0.39 1.21 16 9 C -0.04 -0.46 5.04 -104.62 -0.53 -0.99 16 10 C -0.12 -1.16 7.78 -39.58 -0.31 -1.46 16 11 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 12 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 13 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 14 C -0.11 -1.07 9.74 -39.59 -0.39 -1.45 16 15 C -0.08 -0.86 2.70 -154.51 -0.42 -1.28 16 16 C -0.12 -1.07 8.57 37.16 0.32 -0.75 16 17 C -0.12 -1.37 8.74 37.16 0.32 -1.05 16 18 C 0.13 2.36 3.57 -66.09 -0.24 2.12 16 19 H 0.10 1.86 6.99 -51.93 -0.36 1.49 16 20 C -0.16 -3.00 6.61 -24.32 -0.16 -3.16 16 21 C 0.15 3.39 5.02 -2.27 -0.01 3.38 16 22 N -0.60 -14.80 2.93 -169.77 -0.50 -15.30 16 23 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 24 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 25 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 27 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 31 C 0.13 2.68 6.17 -3.06 -0.02 2.66 16 32 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.10 1.93 5.30 -51.93 -0.28 1.65 16 34 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 35 H 0.12 1.12 5.20 -52.48 -0.27 0.85 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.54 5.94 -51.93 -0.31 0.23 16 43 H 0.07 0.88 7.38 -51.93 -0.38 0.50 16 44 H 0.06 0.60 8.05 -51.92 -0.42 0.18 16 45 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.10 2.78 5.87 -51.93 -0.30 2.48 16 49 H 0.02 0.49 5.63 -51.93 -0.29 0.19 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -30.16 397.52 -10.87 -41.03 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.20 Total: 4.17 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.30 Total: -6.52 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.42 Total: -51.08 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.16 -10.87 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033088559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.883 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds