Wall clock time and date at job start Wed Apr 1 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47222 * 2 1 4 4 C 1.38252 * 120.00138 * 265.25134 * 3 2 1 5 5 C 1.38214 * 119.99955 * 180.29986 * 4 3 2 6 6 C 1.38264 * 119.99791 * 359.70252 * 5 4 3 7 7 C 1.38206 * 120.00033 * 0.02562 * 6 5 4 8 8 C 1.38213 * 119.99807 * 85.00178 * 3 2 1 9 9 C 1.50700 * 120.00207 * 359.97438 * 8 3 2 10 10 H 1.09003 * 115.55858 * 334.03730 * 9 8 3 11 11 C 1.52997 * 117.50208 * 188.35146 * 9 8 3 12 12 C 1.52996 * 117.50339 * 119.72366 * 9 8 3 13 13 H 1.08995 * 117.51985 * 0.02562 * 12 9 8 14 14 C 1.50704 * 117.50179 * 214.97836 * 12 9 8 15 15 O 1.21276 * 119.99932 * 359.97438 * 14 12 9 16 16 N 1.34776 * 119.99672 * 179.97438 * 14 12 9 17 17 C 1.46499 * 120.00470 * 0.02562 * 16 14 12 18 18 C 1.46500 * 119.99678 * 180.02562 * 16 14 12 19 19 H 1.09003 * 110.64225 * 50.59359 * 18 16 14 20 20 C 1.55156 * 110.72351 * 287.26465 * 18 16 14 21 21 C 1.54911 * 101.58080 * 277.13817 * 20 18 16 22 22 N 1.47432 * 104.83229 * 322.99109 * 21 20 18 23 23 C 1.36935 * 125.64772 * 204.09679 * 22 21 20 24 24 H 1.08005 * 119.99861 * 180.02562 * 23 22 21 25 25 C 1.38813 * 120.00240 * 0.03385 * 23 22 21 26 26 N 1.31621 * 119.99874 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00042 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47359 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47026 * 120.00104 * 27 25 23 30 30 H 1.48493 * 109.47622 * 240.00048 * 27 25 23 31 31 C 1.47027 * 108.69900 * 24.12480 * 22 21 20 32 32 H 1.09004 * 109.46901 * 59.99876 * 1 2 3 33 33 H 1.09001 * 109.47560 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47319 * 300.00007 * 1 2 3 35 35 H 1.09005 * 109.47319 * 239.99993 * 2 1 3 36 36 H 1.09006 * 109.47361 * 120.00356 * 2 1 3 37 37 H 1.08003 * 120.00110 * 0.02562 * 4 3 2 38 38 H 1.08003 * 120.00459 * 179.72629 * 5 4 3 39 39 H 1.08001 * 119.99724 * 180.02562 * 6 5 4 40 40 H 1.08003 * 119.99946 * 179.97438 * 7 6 5 41 41 H 1.09000 * 117.50294 * 145.01674 * 11 9 8 42 42 H 1.09000 * 117.49921 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.46924 * 264.77392 * 17 16 14 44 44 H 1.09001 * 109.46742 * 24.77812 * 17 16 14 45 45 H 1.08998 * 109.47085 * 144.77539 * 17 16 14 46 46 H 1.09000 * 111.00288 * 35.20528 * 20 18 16 47 47 H 1.08994 * 111.01026 * 159.06063 * 20 18 16 48 48 H 1.08997 * 110.37323 * 204.14744 * 21 20 18 49 49 H 1.09006 * 110.46155 * 81.86825 * 21 20 18 50 50 H 0.96995 * 119.99827 * 180.02562 * 26 25 23 51 51 H 1.09001 * 109.88246 * 239.52580 * 31 22 21 52 52 H 1.09002 * 109.87673 * 118.36654 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1932 5 6 2.8228 3.3405 -1.1926 6 6 2.9598 4.0253 0.0007 7 6 2.6307 3.4086 1.1930 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 1 1.0700 0.6334 2.4202 11 6 1.7848 2.3008 3.7536 12 6 2.9106 1.2869 3.5401 13 1 3.8973 1.6761 3.2896 14 6 2.8991 0.0446 4.3932 15 8 2.0347 -0.7913 4.2354 16 7 3.8495 -0.1374 5.3313 17 6 4.8933 0.8726 5.5223 18 6 3.8387 -1.3453 6.1602 19 1 3.7586 -2.2372 5.5386 20 6 2.6859 -1.2893 7.1973 21 6 3.3236 -0.4404 8.3254 22 7 4.7357 -0.8625 8.3631 23 6 5.5704 -0.7610 9.4439 24 1 6.5932 -1.0999 9.3699 25 6 5.1019 -0.2229 10.6346 26 7 3.8552 0.1895 10.7249 27 14 6.2407 -0.0838 12.1087 28 1 7.5812 -0.6130 11.7503 29 1 6.3622 1.3414 12.5076 30 1 5.6844 -0.8687 13.2398 31 6 5.0994 -1.4098 7.0478 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2488 1.5048 -2.1253 38 1 3.0800 3.8224 -2.1243 39 1 3.3240 5.0420 0.0011 40 1 2.7381 3.9434 2.1252 41 1 1.0359 2.0693 4.5110 42 1 2.0313 3.3568 3.6431 43 1 5.7778 0.5937 4.9496 44 1 4.5288 1.8410 5.1795 45 1 5.1498 0.9346 6.5799 46 1 1.8101 -0.7914 6.7813 47 1 2.4330 -2.2874 7.5547 48 1 2.8391 -0.6510 9.2788 49 1 3.2513 0.6215 8.0904 50 1 3.5279 0.5659 11.5568 51 1 5.4255 -2.4444 7.1541 52 1 5.8957 -0.8116 6.6048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033373570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:44 Heat of formation + Delta-G solvation = 45.265711 kcal Electronic energy + Delta-G solvation = -30219.799086 eV Core-core repulsion = 26378.797137 eV Total energy + Delta-G solvation = -3841.001949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.55952 -39.57570 -37.65844 -36.11890 -34.47593 -34.35941 -32.12388 -30.75260 -29.54180 -29.40362 -27.59524 -26.57351 -24.92488 -24.21602 -23.96941 -23.55666 -21.24076 -20.69295 -20.11500 -19.82627 -18.40525 -17.41829 -16.98090 -16.46147 -16.34421 -15.64031 -15.20761 -15.11522 -14.74473 -14.35139 -14.23809 -14.00468 -13.72778 -13.66970 -13.37756 -12.95970 -12.82086 -12.64307 -12.49230 -12.28458 -12.03963 -12.01218 -11.89138 -11.65725 -11.58419 -11.52383 -11.05911 -11.01543 -10.95157 -10.90186 -10.73274 -10.63189 -10.48671 -10.22477 -10.10373 -9.93293 -9.65333 -9.43271 -8.97040 -8.68876 -8.64255 -8.21549 -6.88082 -5.68420 -3.11319 1.09939 1.19038 2.69323 3.19921 3.37004 3.42670 3.45147 3.50317 3.97062 4.35766 4.45457 4.56332 4.62149 4.71553 4.75527 4.82221 4.92238 4.99168 5.08928 5.22059 5.31524 5.33604 5.37112 5.40476 5.42998 5.45453 5.51639 5.58244 5.70333 5.71318 5.79330 5.81329 5.82722 5.83939 5.90839 5.93826 6.00259 6.11246 6.18406 6.31161 6.33633 6.34900 6.38499 6.52095 6.52754 6.67390 6.73129 6.80837 7.05002 7.51429 7.59828 7.73175 7.84236 8.32927 8.45789 9.18064 9.78567 10.43188 11.34837 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002341 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.883011 B =11957.695759 C =12533.355467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.047 4.047 9 C -0.089 4.089 10 H 0.129 0.871 11 C -0.144 4.144 12 C -0.172 4.172 13 H 0.123 0.877 14 C 0.541 3.459 15 O -0.545 6.545 16 N -0.590 5.590 17 C 0.072 3.928 18 C 0.134 3.866 19 H 0.078 0.922 20 C -0.150 4.150 21 C 0.155 3.845 22 N -0.602 5.602 23 C -0.224 4.224 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.290 1.290 31 C 0.126 3.874 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.011 0.989 50 H 0.251 0.749 51 H 0.034 0.966 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 5.929 -22.873 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.048 4.048 9 C -0.107 4.107 10 H 0.147 0.853 11 C -0.181 4.181 12 C -0.193 4.193 13 H 0.141 0.859 14 C 0.329 3.671 15 O -0.424 6.424 16 N -0.322 5.322 17 C -0.071 4.071 18 C 0.031 3.969 19 H 0.096 0.904 20 C -0.190 4.190 21 C 0.031 3.969 22 N -0.329 5.329 23 C -0.352 4.352 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.217 1.217 31 C 0.000 4.000 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.123 0.877 49 H 0.029 0.971 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.901 5.541 -22.706 23.696 hybrid contribution 0.823 0.289 0.761 1.158 sum -3.078 5.830 -21.945 22.914 Atomic orbital electron populations 1.21738 0.94597 1.01902 1.02059 1.20599 0.96370 0.92540 1.03267 1.19736 0.98611 0.96229 0.92357 1.21013 1.00045 0.95193 0.97342 1.21115 1.00091 0.94873 0.98029 1.21089 1.00637 0.99904 0.92498 1.21079 0.99437 0.94570 0.98410 1.19006 0.99190 0.93703 0.92852 1.21130 1.00670 1.01855 0.87053 0.85318 1.23122 0.99420 0.96265 0.99310 1.22368 0.96703 0.98169 1.02106 0.85919 1.19494 0.81158 0.86595 0.79867 1.90657 1.36941 1.45095 1.69660 1.47741 1.27947 1.21629 1.34856 1.21919 0.90158 0.90497 1.04537 1.22037 0.97779 0.85869 0.91168 0.90361 1.23325 0.96823 1.01538 0.97289 1.21909 0.84106 0.93501 0.97419 1.44554 1.09154 1.72140 1.07033 1.19100 0.92889 1.34600 0.88614 0.90416 1.24797 0.96670 1.01088 0.98014 1.69831 1.14017 1.47312 1.25635 0.86008 0.79523 0.77301 0.82695 1.20536 1.21786 1.21748 1.21621 0.93696 0.97475 0.87187 0.92834 0.92261 0.92270 0.91246 0.90134 0.86180 0.86271 0.86155 0.85799 0.87604 0.87551 0.93111 0.91491 0.88733 0.91865 0.91426 0.87747 0.97120 0.93767 0.94815 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.74 37.15 0.36 -0.93 16 2 C -0.09 -0.87 5.38 -27.89 -0.15 -1.02 16 3 C -0.07 -0.71 5.13 -104.63 -0.54 -1.24 16 4 C -0.12 -1.06 9.68 -39.59 -0.38 -1.45 16 5 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 6 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 7 C -0.12 -1.12 9.30 -39.59 -0.37 -1.49 16 8 C -0.05 -0.51 5.61 -104.62 -0.59 -1.09 16 9 C -0.09 -1.03 4.65 -91.78 -0.43 -1.45 16 10 H 0.13 1.66 5.47 -51.93 -0.28 1.37 16 11 C -0.14 -1.58 9.56 -26.73 -0.26 -1.84 16 12 C -0.17 -2.16 4.43 -91.77 -0.41 -2.56 16 13 H 0.12 1.37 7.16 -51.93 -0.37 1.00 16 14 C 0.54 8.81 7.12 -10.98 -0.08 8.73 16 15 O -0.55 -10.38 15.60 5.56 0.09 -10.29 16 16 N -0.59 -9.86 2.98 -171.84 -0.51 -10.37 16 17 C 0.07 1.06 8.69 59.85 0.52 1.58 16 18 C 0.13 2.51 3.15 -66.10 -0.21 2.30 16 19 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 20 C -0.15 -3.09 6.56 -24.58 -0.16 -3.25 16 21 C 0.16 3.77 5.77 -2.52 -0.01 3.75 16 22 N -0.60 -14.88 3.05 -170.06 -0.52 -15.40 16 23 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 24 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 27 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 C 0.13 2.56 6.03 -3.07 -0.02 2.55 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.17 -51.93 -0.37 0.19 16 35 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.08 0.90 6.95 -51.93 -0.36 0.54 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.02 6.02 -52.48 -0.32 0.70 16 41 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.11 0.94 6.18 -51.93 -0.32 0.62 16 43 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 44 H 0.07 0.83 6.35 -51.93 -0.33 0.50 16 45 H 0.09 1.70 6.32 -51.93 -0.33 1.37 16 46 H 0.06 1.30 7.36 -51.93 -0.38 0.92 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.10 2.88 5.87 -51.93 -0.30 2.58 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.03 0.65 5.95 -51.93 -0.31 0.34 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -30.89 403.40 -11.37 -42.27 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.29 Total: 3.80 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.76 Total: -6.87 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.47 Total: -51.63 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.89 -11.37 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033373570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.534 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds