Wall clock time and date at job start Wed Apr 1 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47222 * 2 1 4 4 C 1.38252 * 120.00138 * 265.25134 * 3 2 1 5 5 C 1.38214 * 119.99955 * 180.29986 * 4 3 2 6 6 C 1.38264 * 119.99791 * 359.70252 * 5 4 3 7 7 C 1.38206 * 120.00033 * 0.02562 * 6 5 4 8 8 C 1.38213 * 119.99807 * 85.00178 * 3 2 1 9 9 C 1.50700 * 120.00207 * 359.97438 * 8 3 2 10 10 H 1.09003 * 115.55858 * 334.03730 * 9 8 3 11 11 C 1.52997 * 117.50208 * 188.35146 * 9 8 3 12 12 C 1.52996 * 117.50339 * 119.72366 * 9 8 3 13 13 H 1.08995 * 117.51985 * 0.02562 * 12 9 8 14 14 C 1.50704 * 117.50179 * 214.97836 * 12 9 8 15 15 O 1.21276 * 119.99932 * 359.97438 * 14 12 9 16 16 N 1.34776 * 119.99672 * 179.97438 * 14 12 9 17 17 C 1.46499 * 120.00470 * 0.02562 * 16 14 12 18 18 C 1.46500 * 119.99678 * 180.02562 * 16 14 12 19 19 H 1.09003 * 110.64225 * 50.59359 * 18 16 14 20 20 C 1.55156 * 110.72351 * 287.26465 * 18 16 14 21 21 C 1.54911 * 101.58080 * 277.13817 * 20 18 16 22 22 N 1.47432 * 104.83229 * 322.99109 * 21 20 18 23 23 C 1.36935 * 125.64772 * 204.09679 * 22 21 20 24 24 H 1.08005 * 119.99861 * 180.02562 * 23 22 21 25 25 C 1.38813 * 120.00240 * 0.03385 * 23 22 21 26 26 N 1.31621 * 119.99874 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00042 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47359 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47026 * 120.00104 * 27 25 23 30 30 H 1.48493 * 109.47622 * 240.00048 * 27 25 23 31 31 C 1.47027 * 108.69900 * 24.12480 * 22 21 20 32 32 H 1.09004 * 109.46901 * 59.99876 * 1 2 3 33 33 H 1.09001 * 109.47560 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47319 * 300.00007 * 1 2 3 35 35 H 1.09005 * 109.47319 * 239.99993 * 2 1 3 36 36 H 1.09006 * 109.47361 * 120.00356 * 2 1 3 37 37 H 1.08003 * 120.00110 * 0.02562 * 4 3 2 38 38 H 1.08003 * 120.00459 * 179.72629 * 5 4 3 39 39 H 1.08001 * 119.99724 * 180.02562 * 6 5 4 40 40 H 1.08003 * 119.99946 * 179.97438 * 7 6 5 41 41 H 1.09000 * 117.50294 * 145.01674 * 11 9 8 42 42 H 1.09000 * 117.49921 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.46924 * 264.77392 * 17 16 14 44 44 H 1.09001 * 109.46742 * 24.77812 * 17 16 14 45 45 H 1.08998 * 109.47085 * 144.77539 * 17 16 14 46 46 H 1.09000 * 111.00288 * 35.20528 * 20 18 16 47 47 H 1.08994 * 111.01026 * 159.06063 * 20 18 16 48 48 H 1.08997 * 110.37323 * 204.14744 * 21 20 18 49 49 H 1.09006 * 110.46155 * 81.86825 * 21 20 18 50 50 H 0.96995 * 119.99827 * 180.02562 * 26 25 23 51 51 H 1.09001 * 109.88246 * 239.52580 * 31 22 21 52 52 H 1.09002 * 109.87673 * 118.36654 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1932 5 6 2.8228 3.3405 -1.1926 6 6 2.9598 4.0253 0.0007 7 6 2.6307 3.4086 1.1930 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 1 1.0700 0.6334 2.4202 11 6 1.7848 2.3008 3.7536 12 6 2.9106 1.2869 3.5401 13 1 3.8973 1.6761 3.2896 14 6 2.8991 0.0446 4.3932 15 8 2.0347 -0.7913 4.2354 16 7 3.8495 -0.1374 5.3313 17 6 4.8933 0.8726 5.5223 18 6 3.8387 -1.3453 6.1602 19 1 3.7586 -2.2372 5.5386 20 6 2.6859 -1.2893 7.1973 21 6 3.3236 -0.4404 8.3254 22 7 4.7357 -0.8625 8.3631 23 6 5.5704 -0.7610 9.4439 24 1 6.5932 -1.0999 9.3699 25 6 5.1019 -0.2229 10.6346 26 7 3.8552 0.1895 10.7249 27 14 6.2407 -0.0838 12.1087 28 1 7.5812 -0.6130 11.7503 29 1 6.3622 1.3414 12.5076 30 1 5.6844 -0.8687 13.2398 31 6 5.0994 -1.4098 7.0478 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2488 1.5048 -2.1253 38 1 3.0800 3.8224 -2.1243 39 1 3.3240 5.0420 0.0011 40 1 2.7381 3.9434 2.1252 41 1 1.0359 2.0693 4.5110 42 1 2.0313 3.3568 3.6431 43 1 5.7778 0.5937 4.9496 44 1 4.5288 1.8410 5.1795 45 1 5.1498 0.9346 6.5799 46 1 1.8101 -0.7914 6.7813 47 1 2.4330 -2.2874 7.5547 48 1 2.8391 -0.6510 9.2788 49 1 3.2513 0.6215 8.0904 50 1 3.5279 0.5659 11.5568 51 1 5.4255 -2.4444 7.1541 52 1 5.8957 -0.8116 6.6048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033373570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:39 Heat of formation + Delta-G solvation = 31.088417 kcal Electronic energy + Delta-G solvation = -30220.413860 eV Core-core repulsion = 26378.797137 eV Total energy + Delta-G solvation = -3841.616723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.49 seconds Orbital eigenvalues (eV) -41.64088 -40.59984 -39.11006 -37.20893 -36.03705 -35.07306 -33.98973 -31.56695 -31.19959 -30.20744 -29.29618 -27.97458 -26.44326 -25.39150 -24.78816 -24.59211 -22.19884 -21.95412 -21.63004 -20.91103 -19.71332 -18.94735 -18.49861 -17.70708 -17.30120 -16.82097 -16.52929 -16.38748 -15.92451 -15.67072 -15.49336 -15.07170 -14.73091 -14.47849 -14.44017 -14.33091 -14.08997 -13.96098 -13.72900 -13.64721 -13.40491 -13.12390 -12.92743 -12.89217 -12.80285 -12.73130 -12.65693 -12.35216 -12.27931 -12.03257 -11.97262 -11.82476 -11.80526 -11.73562 -11.54715 -11.46045 -11.34749 -10.79067 -10.74459 -9.64942 -9.61384 -9.37208 -8.89904 -7.76513 -5.21435 0.39688 0.52473 1.47967 1.48544 1.49306 1.59468 1.95714 2.50035 2.68671 3.09356 3.34778 3.37446 3.63753 3.69056 3.76911 3.85402 3.91938 3.94471 4.00698 4.10049 4.14674 4.22005 4.27497 4.32714 4.34933 4.50048 4.58129 4.62511 4.64197 4.66280 4.68903 4.70732 4.75304 4.89808 4.92582 4.96453 4.98180 4.99990 5.07950 5.09719 5.13645 5.18388 5.27771 5.37939 5.46353 5.56381 5.61637 5.65512 5.66980 5.78671 5.81130 6.15830 6.28284 6.43475 7.09782 7.15698 7.76517 8.40975 9.25704 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002341 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.883011 B =11957.695759 C =12533.355467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.084 4.084 4 C -0.125 4.125 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.081 4.081 10 H 0.109 0.891 11 C -0.135 4.135 12 C -0.177 4.177 13 H 0.143 0.857 14 C 0.537 3.463 15 O -0.579 6.579 16 N -0.595 5.595 17 C 0.074 3.926 18 C 0.145 3.855 19 H 0.088 0.912 20 C -0.138 4.138 21 C 0.169 3.831 22 N -0.618 5.618 23 C -0.232 4.232 24 H 0.086 0.914 25 C -0.067 4.067 26 N -0.950 5.950 27 Si 0.980 3.020 28 H -0.265 1.265 29 H -0.293 1.293 30 H -0.295 1.295 31 C 0.127 3.873 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.069 0.931 49 H -0.011 1.011 50 H 0.246 0.754 51 H 0.040 0.960 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 7.151 -25.090 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.143 4.143 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.064 4.064 9 C -0.099 4.099 10 H 0.127 0.873 11 C -0.172 4.172 12 C -0.197 4.197 13 H 0.161 0.839 14 C 0.327 3.673 15 O -0.459 6.459 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.041 3.959 19 H 0.106 0.894 20 C -0.178 4.178 21 C 0.043 3.957 22 N -0.344 5.344 23 C -0.361 4.361 24 H 0.104 0.896 25 C -0.259 4.259 26 N -0.600 5.600 27 Si 0.809 3.191 28 H -0.189 1.189 29 H -0.220 1.220 30 H -0.223 1.223 31 C 0.002 3.998 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.110 0.890 42 H 0.152 0.848 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.007 0.993 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.398 6.760 -24.955 25.965 hybrid contribution 0.344 -0.093 1.370 1.416 sum -2.055 6.667 -23.585 24.595 Atomic orbital electron populations 1.21709 0.94292 1.02079 1.01896 1.20556 0.96652 0.92591 1.02720 1.19877 0.99197 0.96394 0.92908 1.21256 0.99767 0.95745 0.97497 1.21460 0.99046 0.94613 0.99074 1.21406 1.00057 1.00905 0.92179 1.21269 0.99209 0.94113 0.99509 1.19007 1.00631 0.94455 0.92288 1.21004 0.99551 1.01478 0.87883 0.87261 1.23222 0.98041 0.97378 0.98554 1.22332 0.98196 0.96920 1.02287 0.83943 1.20118 0.80159 0.87344 0.79664 1.90638 1.38100 1.46538 1.70645 1.47818 1.28757 1.21375 1.34642 1.21970 0.90644 0.91333 1.02825 1.21825 0.95769 0.87463 0.90865 0.89407 1.23137 0.97250 1.00679 0.96692 1.21546 0.84443 0.92826 0.96836 1.44736 1.09093 1.72287 1.08314 1.19477 0.93497 1.33760 0.89343 0.89641 1.25618 0.98091 1.01501 1.00725 1.70076 1.15670 1.48407 1.25820 0.84982 0.78333 0.76768 0.79058 1.18888 1.22045 1.22274 1.21733 0.94816 0.97660 0.85554 0.91789 0.91947 0.93531 0.90011 0.92361 0.84583 0.83970 0.84005 0.84576 0.88972 0.84815 0.90674 0.88995 0.92038 0.92140 0.91320 0.91333 0.99343 0.94459 0.94160 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.74 71.98 0.70 -1.79 16 2 C -0.09 -1.65 5.38 29.85 0.16 -1.49 16 3 C -0.08 -1.60 5.13 -19.87 -0.10 -1.71 16 4 C -0.12 -1.97 9.68 22.27 0.22 -1.75 16 5 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 6 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 7 C -0.12 -2.05 9.30 22.27 0.21 -1.84 16 8 C -0.06 -1.27 5.61 -19.87 -0.11 -1.38 16 9 C -0.08 -1.82 4.65 -11.54 -0.05 -1.88 16 10 H 0.11 2.91 5.47 -2.39 -0.01 2.90 16 11 C -0.13 -2.81 9.56 30.59 0.29 -2.52 16 12 C -0.18 -4.20 4.43 -11.54 -0.05 -4.25 16 13 H 0.14 2.81 7.16 -2.39 -0.02 2.79 16 14 C 0.54 17.27 7.12 87.66 0.62 17.90 16 15 O -0.58 -22.31 15.60 -3.02 -0.05 -22.36 16 16 N -0.59 -19.40 2.98 -815.97 -2.43 -21.83 16 17 C 0.07 2.07 8.69 127.77 1.11 3.18 16 18 C 0.14 5.34 3.15 46.18 0.15 5.49 16 19 H 0.09 3.12 8.08 -2.39 -0.02 3.10 16 20 C -0.14 -5.79 6.56 31.99 0.21 -5.58 16 21 C 0.17 8.46 5.77 86.85 0.50 8.96 16 22 N -0.62 -30.82 3.05 -691.96 -2.11 -32.94 16 23 C -0.23 -12.55 10.27 84.03 0.86 -11.69 16 24 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 25 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 26 N -0.95 -56.23 10.09 21.65 0.22 -56.01 16 27 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 30 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 31 C 0.13 5.08 6.03 86.73 0.52 5.60 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.91 7.17 -2.38 -0.02 0.90 16 35 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 36 H 0.06 1.34 6.95 -2.38 -0.02 1.32 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.14 1.82 6.02 -2.91 -0.02 1.80 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.13 2.02 6.18 -2.39 -0.01 2.01 16 43 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 44 H 0.09 2.08 6.35 -2.39 -0.02 2.06 16 45 H 0.06 2.17 6.32 -2.39 -0.02 2.15 16 46 H 0.06 2.55 7.36 -2.39 -0.02 2.54 16 47 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 48 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 49 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 50 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.05 1.89 5.95 -2.39 -0.01 1.87 16 Total: -1.00 -68.22 403.40 4.71 -63.51 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.91 Total: 23.80 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 6.15 Total: -1.08 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.32 Total: -110.78 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.22 4.71 -63.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033373570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.596 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.49 seconds