Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.38255 * 120.00152 * 265.02467 * 3 2 1 5 5 C 1.38224 * 120.00051 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99596 * 0.02562 * 5 4 3 7 7 C 1.38211 * 120.00251 * 359.74179 * 6 5 4 8 8 C 1.38218 * 119.99928 * 85.00344 * 3 2 1 9 9 C 1.50697 * 119.99574 * 0.02562 * 8 3 2 10 10 H 1.09001 * 115.55460 * 334.27711 * 9 8 3 11 11 C 1.53006 * 117.49508 * 188.61120 * 9 8 3 12 12 C 1.52997 * 117.49950 * 119.99115 * 9 8 3 13 13 H 1.09002 * 117.49910 * 359.97438 * 12 9 8 14 14 C 1.50699 * 117.50247 * 214.97927 * 12 9 8 15 15 O 1.21287 * 119.99816 * 359.97438 * 14 12 9 16 16 N 1.34774 * 120.00330 * 179.97438 * 14 12 9 17 17 C 1.46498 * 120.00059 * 359.97438 * 16 14 12 18 18 C 1.46505 * 119.99973 * 179.97438 * 16 14 12 19 19 H 1.08993 * 110.88527 * 356.12304 * 18 16 14 20 20 C 1.55162 * 111.00134 * 120.00088 * 18 16 14 21 21 C 1.54318 * 102.93969 * 153.57622 * 20 18 16 22 22 N 1.47027 * 107.27340 * 337.80625 * 21 20 18 23 23 C 1.36938 * 125.64786 * 178.92096 * 22 21 20 24 24 H 1.08000 * 119.99718 * 180.02562 * 23 22 21 25 25 C 1.38808 * 120.00282 * 0.02562 * 23 22 21 26 26 N 1.31628 * 119.99916 * 0.02562 * 25 23 22 27 27 Si 1.86790 * 120.00193 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47382 * 60.00426 * 27 25 23 29 29 H 1.48501 * 109.47395 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47316 * 300.00231 * 27 25 23 31 31 C 1.47418 * 108.70337 * 358.94235 * 22 21 20 32 32 H 1.08995 * 109.47040 * 299.98972 * 1 2 3 33 33 H 1.09000 * 109.47539 * 59.99839 * 1 2 3 34 34 H 1.09008 * 109.46586 * 180.02562 * 1 2 3 35 35 H 1.09007 * 109.47290 * 240.00683 * 2 1 3 36 36 H 1.08995 * 109.47616 * 120.00663 * 2 1 3 37 37 H 1.07995 * 120.00151 * 0.02562 * 4 3 2 38 38 H 1.07991 * 120.00114 * 180.02562 * 5 4 3 39 39 H 1.07997 * 119.99476 * 180.02562 * 6 5 4 40 40 H 1.07997 * 120.00110 * 180.28192 * 7 6 5 41 41 H 1.08990 * 117.50086 * 359.97438 * 11 9 8 42 42 H 1.09004 * 117.49623 * 145.02605 * 11 9 8 43 43 H 1.09003 * 109.46822 * 89.99831 * 17 16 14 44 44 H 1.08996 * 109.47401 * 209.99730 * 17 16 14 45 45 H 1.08996 * 109.46968 * 330.00418 * 17 16 14 46 46 H 1.08997 * 110.71607 * 271.93879 * 20 18 16 47 47 H 1.09002 * 110.71659 * 35.03441 * 20 18 16 48 48 H 1.08998 * 109.88521 * 97.22386 * 21 20 18 49 49 H 1.09005 * 109.88395 * 218.23591 * 21 20 18 50 50 H 0.96993 * 119.99940 * 179.97438 * 26 25 23 51 51 H 1.08998 * 110.37045 * 265.28979 * 31 22 21 52 52 H 1.08994 * 110.37288 * 142.96214 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8208 3.3414 -1.1928 6 6 2.9533 4.0276 0.0001 7 6 2.6205 3.4123 1.1921 8 6 2.1643 2.1071 1.1925 9 6 1.8065 1.4343 2.4926 10 1 1.0748 0.6297 2.4198 11 6 1.7799 2.3016 3.7528 12 6 2.9108 1.2928 3.5421 13 1 3.8962 1.6860 3.2920 14 6 2.9040 0.0513 4.3963 15 8 2.0439 -0.7891 4.2379 16 7 3.8537 -0.1253 5.3361 17 6 4.8930 0.8895 5.5270 18 6 3.8468 -1.3320 6.1668 19 1 2.9757 -1.9495 5.9479 20 6 5.1599 -2.1387 5.9867 21 6 5.2879 -2.8943 7.3261 22 7 4.4966 -2.1558 8.3212 23 6 4.3330 -2.5106 9.6337 24 1 3.7288 -1.8988 10.2872 25 6 4.9437 -3.6566 10.1242 26 7 5.6805 -4.4020 9.3278 27 14 4.7201 -4.1410 11.9142 28 1 3.2773 -4.3565 12.1922 29 1 5.4694 -5.3941 12.1854 30 1 5.2361 -3.0572 12.7886 31 6 3.9080 -0.9704 7.6719 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0278 0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 2.2567 1.5020 -2.1246 38 1 3.0769 3.8236 -2.1245 39 1 3.3124 5.0461 0.0000 40 1 2.7197 3.9499 2.1234 41 1 2.0215 3.3585 3.6416 42 1 1.0309 2.0671 4.5093 43 1 4.5572 1.6192 6.2639 44 1 5.8070 0.4116 5.8794 45 1 5.0877 1.3927 4.5800 46 1 5.0714 -2.8388 5.1559 47 1 6.0064 -1.4688 5.8362 48 1 4.8979 -3.9065 7.2196 49 1 6.3332 -2.9303 7.6331 50 1 6.1076 -5.2025 9.6706 51 1 4.5431 -0.0983 7.8270 52 1 2.9059 -0.7844 8.0583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033373571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = 41.139264 kcal Electronic energy + Delta-G solvation = -29763.786366 eV Core-core repulsion = 25922.605481 eV Total energy + Delta-G solvation = -3841.180885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -40.62089 -39.58177 -37.64422 -36.24243 -34.78840 -34.41204 -32.12659 -30.82485 -29.57434 -29.24088 -27.70076 -26.68992 -25.05221 -24.29911 -24.02926 -23.55456 -21.29432 -20.60285 -20.12695 -19.95190 -18.66762 -17.68087 -16.97024 -16.62170 -16.28184 -15.61814 -15.30429 -15.06194 -14.65538 -14.34220 -14.22710 -14.02262 -13.97290 -13.70608 -13.42954 -13.02096 -12.93297 -12.76596 -12.46736 -12.41585 -12.27001 -12.05033 -11.99183 -11.90946 -11.71411 -11.61571 -11.10744 -11.01901 -10.94927 -10.85824 -10.78262 -10.73292 -10.56457 -10.28015 -10.12665 -9.83503 -9.71262 -9.58670 -9.02564 -8.70638 -8.62335 -8.33743 -6.84944 -5.71538 -3.05940 1.04238 1.13750 2.57453 3.06818 3.40897 3.41631 3.45341 3.46697 3.86778 4.26862 4.48859 4.50790 4.56250 4.62158 4.64444 4.75753 4.83588 4.93981 4.96237 5.18786 5.23789 5.26859 5.28942 5.34267 5.36871 5.40219 5.46636 5.56217 5.61810 5.66126 5.71597 5.75028 5.76623 5.77713 5.79934 5.85723 5.89869 5.95165 6.08175 6.20702 6.25875 6.28624 6.30660 6.46771 6.50012 6.58057 6.69767 6.75457 6.96357 7.53856 7.58265 7.61881 7.81573 8.23877 8.33866 9.20779 9.80731 10.45844 11.39958 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002092 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.707233 B =13382.709162 C =13707.110175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.088 4.088 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.174 4.174 13 H 0.125 0.875 14 C 0.541 3.459 15 O -0.543 6.543 16 N -0.596 5.596 17 C 0.077 3.923 18 C 0.123 3.877 19 H 0.106 0.894 20 C -0.153 4.153 21 C 0.180 3.820 22 N -0.603 5.603 23 C -0.229 4.229 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.922 5.922 27 Si 0.914 3.086 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 C 0.132 3.868 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.045 0.955 50 H 0.253 0.747 51 H 0.022 0.978 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 17.386 -21.122 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.107 4.107 10 H 0.147 0.853 11 C -0.181 4.181 12 C -0.195 4.195 13 H 0.143 0.857 14 C 0.329 3.671 15 O -0.420 6.420 16 N -0.327 5.327 17 C -0.066 4.066 18 C 0.019 3.981 19 H 0.124 0.876 20 C -0.192 4.192 21 C 0.055 3.945 22 N -0.330 5.330 23 C -0.357 4.357 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.569 5.569 27 Si 0.744 3.256 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.212 1.212 31 C 0.005 3.995 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.040 0.960 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.364 16.738 -21.034 27.411 hybrid contribution 0.226 -0.167 0.950 0.990 sum -5.139 16.571 -20.084 26.540 Atomic orbital electron populations 1.21737 0.94563 1.01982 1.02013 1.20611 0.96396 0.92495 1.03379 1.19750 0.98420 0.96277 0.92355 1.21031 0.99933 0.95176 0.97397 1.21124 1.00019 0.94825 0.98054 1.21084 1.00670 0.99911 0.92512 1.21055 0.99614 0.94495 0.98368 1.18990 0.99389 0.93690 0.92811 1.21139 1.00630 1.01814 0.87071 0.85260 1.23117 0.99243 0.96283 0.99473 1.22396 0.96762 0.98100 1.02230 0.85719 1.19545 0.81058 0.86583 0.79934 1.90684 1.37399 1.44801 1.69157 1.47719 1.27954 1.21582 1.35458 1.21799 0.91903 0.91469 1.01479 1.22471 0.99929 0.84884 0.90794 0.87614 1.23244 0.96168 0.99115 1.00687 1.21135 0.96317 0.93939 0.83124 1.44377 1.56959 1.24423 1.07214 1.19004 1.26270 1.06318 0.84144 0.90437 1.24818 0.99798 0.97508 0.98293 1.69950 1.36291 1.16792 1.33914 0.86170 0.77570 0.77624 0.84209 1.21117 1.21581 1.21164 1.21730 0.96793 0.91236 0.89751 0.92325 0.92813 0.92188 0.91160 0.90102 0.86121 0.86237 0.86161 0.85852 0.87517 0.87673 0.92384 0.90400 0.91413 0.91956 0.92129 0.93324 0.93667 0.93646 0.96015 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.74 37.16 0.36 -0.89 16 2 C -0.09 -0.86 5.38 -27.88 -0.15 -1.01 16 3 C -0.07 -0.66 5.13 -104.62 -0.54 -1.20 16 4 C -0.12 -1.00 9.68 -39.58 -0.38 -1.39 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 6 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 7 C -0.12 -1.00 9.30 -39.58 -0.37 -1.37 16 8 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 9 C -0.09 -0.94 4.66 -91.77 -0.43 -1.36 16 10 H 0.13 1.57 5.47 -51.93 -0.28 1.29 16 11 C -0.14 -1.34 9.56 -26.73 -0.26 -1.60 16 12 C -0.17 -1.93 4.92 -91.77 -0.45 -2.38 16 13 H 0.13 1.18 6.44 -51.93 -0.33 0.85 16 14 C 0.54 8.25 7.46 -10.99 -0.08 8.17 16 15 O -0.54 -10.23 15.64 5.55 0.09 -10.14 16 16 N -0.60 -9.07 2.91 -171.48 -0.50 -9.57 16 17 C 0.08 0.89 8.87 59.85 0.53 1.42 16 18 C 0.12 2.32 3.45 -65.77 -0.23 2.09 16 19 H 0.11 2.24 7.02 -51.93 -0.36 1.87 16 20 C -0.15 -2.94 6.51 -24.90 -0.16 -3.10 16 21 C 0.18 4.40 5.37 -3.06 -0.02 4.39 16 22 N -0.60 -15.57 3.39 -170.08 -0.58 -16.15 16 23 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 24 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 25 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 26 N -0.92 -27.21 10.31 55.49 0.57 -26.64 16 27 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 C 0.13 2.79 6.79 -2.53 -0.02 2.77 16 32 H 0.06 0.54 7.17 -51.93 -0.37 0.17 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 36 H 0.08 0.89 6.94 -51.93 -0.36 0.53 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.12 0.85 6.02 -52.49 -0.32 0.53 16 41 H 0.11 0.75 6.17 -51.93 -0.32 0.43 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.08 0.95 6.41 -51.93 -0.33 0.62 16 45 H 0.07 0.60 5.99 -51.93 -0.31 0.29 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 48 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 49 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.02 0.44 7.00 -51.93 -0.36 0.08 16 52 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -32.60 404.52 -11.39 -44.00 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.23 Total: 1.35 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.82 Total: -6.15 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.50 Total: -52.36 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.60 -11.39 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033373571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.138 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds