Wall clock time and date at job start Wed Apr 1 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.38255 * 120.00152 * 265.02467 * 3 2 1 5 5 C 1.38224 * 120.00051 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99596 * 0.02562 * 5 4 3 7 7 C 1.38211 * 120.00251 * 359.74179 * 6 5 4 8 8 C 1.38218 * 119.99928 * 85.00344 * 3 2 1 9 9 C 1.50697 * 119.99574 * 0.02562 * 8 3 2 10 10 H 1.09001 * 115.55460 * 334.27711 * 9 8 3 11 11 C 1.53006 * 117.49508 * 188.61120 * 9 8 3 12 12 C 1.52997 * 117.49950 * 119.99115 * 9 8 3 13 13 H 1.09002 * 117.49910 * 359.97438 * 12 9 8 14 14 C 1.50699 * 117.50247 * 214.97927 * 12 9 8 15 15 O 1.21287 * 119.99816 * 359.97438 * 14 12 9 16 16 N 1.34774 * 120.00330 * 179.97438 * 14 12 9 17 17 C 1.46498 * 120.00059 * 359.97438 * 16 14 12 18 18 C 1.46505 * 119.99973 * 179.97438 * 16 14 12 19 19 H 1.08993 * 110.88527 * 356.12304 * 18 16 14 20 20 C 1.55162 * 111.00134 * 120.00088 * 18 16 14 21 21 C 1.54318 * 102.93969 * 153.57622 * 20 18 16 22 22 N 1.47027 * 107.27340 * 337.80625 * 21 20 18 23 23 C 1.36938 * 125.64786 * 178.92096 * 22 21 20 24 24 H 1.08000 * 119.99718 * 180.02562 * 23 22 21 25 25 C 1.38808 * 120.00282 * 0.02562 * 23 22 21 26 26 N 1.31628 * 119.99916 * 0.02562 * 25 23 22 27 27 Si 1.86790 * 120.00193 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47382 * 60.00426 * 27 25 23 29 29 H 1.48501 * 109.47395 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47316 * 300.00231 * 27 25 23 31 31 C 1.47418 * 108.70337 * 358.94235 * 22 21 20 32 32 H 1.08995 * 109.47040 * 299.98972 * 1 2 3 33 33 H 1.09000 * 109.47539 * 59.99839 * 1 2 3 34 34 H 1.09008 * 109.46586 * 180.02562 * 1 2 3 35 35 H 1.09007 * 109.47290 * 240.00683 * 2 1 3 36 36 H 1.08995 * 109.47616 * 120.00663 * 2 1 3 37 37 H 1.07995 * 120.00151 * 0.02562 * 4 3 2 38 38 H 1.07991 * 120.00114 * 180.02562 * 5 4 3 39 39 H 1.07997 * 119.99476 * 180.02562 * 6 5 4 40 40 H 1.07997 * 120.00110 * 180.28192 * 7 6 5 41 41 H 1.08990 * 117.50086 * 359.97438 * 11 9 8 42 42 H 1.09004 * 117.49623 * 145.02605 * 11 9 8 43 43 H 1.09003 * 109.46822 * 89.99831 * 17 16 14 44 44 H 1.08996 * 109.47401 * 209.99730 * 17 16 14 45 45 H 1.08996 * 109.46968 * 330.00418 * 17 16 14 46 46 H 1.08997 * 110.71607 * 271.93879 * 20 18 16 47 47 H 1.09002 * 110.71659 * 35.03441 * 20 18 16 48 48 H 1.08998 * 109.88521 * 97.22386 * 21 20 18 49 49 H 1.09005 * 109.88395 * 218.23591 * 21 20 18 50 50 H 0.96993 * 119.99940 * 179.97438 * 26 25 23 51 51 H 1.08998 * 110.37045 * 265.28979 * 31 22 21 52 52 H 1.08994 * 110.37288 * 142.96214 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8208 3.3414 -1.1928 6 6 2.9533 4.0276 0.0001 7 6 2.6205 3.4123 1.1921 8 6 2.1643 2.1071 1.1925 9 6 1.8065 1.4343 2.4926 10 1 1.0748 0.6297 2.4198 11 6 1.7799 2.3016 3.7528 12 6 2.9108 1.2928 3.5421 13 1 3.8962 1.6860 3.2920 14 6 2.9040 0.0513 4.3963 15 8 2.0439 -0.7891 4.2379 16 7 3.8537 -0.1253 5.3361 17 6 4.8930 0.8895 5.5270 18 6 3.8468 -1.3320 6.1668 19 1 2.9757 -1.9495 5.9479 20 6 5.1599 -2.1387 5.9867 21 6 5.2879 -2.8943 7.3261 22 7 4.4966 -2.1558 8.3212 23 6 4.3330 -2.5106 9.6337 24 1 3.7288 -1.8988 10.2872 25 6 4.9437 -3.6566 10.1242 26 7 5.6805 -4.4020 9.3278 27 14 4.7201 -4.1410 11.9142 28 1 3.2773 -4.3565 12.1922 29 1 5.4694 -5.3941 12.1854 30 1 5.2361 -3.0572 12.7886 31 6 3.9080 -0.9704 7.6719 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0278 0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 2.2567 1.5020 -2.1246 38 1 3.0769 3.8236 -2.1245 39 1 3.3124 5.0461 0.0000 40 1 2.7197 3.9499 2.1234 41 1 2.0215 3.3585 3.6416 42 1 1.0309 2.0671 4.5093 43 1 4.5572 1.6192 6.2639 44 1 5.8070 0.4116 5.8794 45 1 5.0877 1.3927 4.5800 46 1 5.0714 -2.8388 5.1559 47 1 6.0064 -1.4688 5.8362 48 1 4.8979 -3.9065 7.2196 49 1 6.3332 -2.9303 7.6331 50 1 6.1076 -5.2025 9.6706 51 1 4.5431 -0.0983 7.8270 52 1 2.9059 -0.7844 8.0583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033373571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:51 Heat of formation + Delta-G solvation = 24.734708 kcal Electronic energy + Delta-G solvation = -29764.497721 eV Core-core repulsion = 25922.605481 eV Total energy + Delta-G solvation = -3841.892240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -41.59218 -40.53663 -39.12966 -37.24496 -36.27546 -35.07598 -34.05808 -31.55155 -31.09077 -30.20751 -29.33462 -27.82235 -26.72453 -25.33474 -24.76221 -24.57372 -22.10325 -21.96797 -21.68911 -20.94757 -19.87636 -18.95896 -18.70221 -17.55122 -17.31635 -16.73734 -16.47370 -16.24500 -15.97244 -15.80660 -15.45968 -15.06078 -14.72682 -14.54216 -14.38220 -14.28386 -14.08607 -14.07070 -13.88591 -13.68499 -13.62745 -13.11829 -13.01292 -12.94444 -12.73081 -12.70852 -12.64962 -12.36019 -12.27762 -12.12050 -12.09238 -11.83178 -11.82332 -11.71911 -11.52976 -11.44867 -11.32704 -10.84602 -10.73425 -9.67807 -9.62951 -9.35834 -8.93820 -7.87287 -5.24526 0.40914 0.53626 1.44550 1.45946 1.49009 1.55137 1.88167 2.49166 2.68958 3.09524 3.31068 3.40456 3.64836 3.66756 3.78194 3.89694 3.90385 3.93381 3.97923 4.07901 4.14996 4.16730 4.26504 4.33364 4.34958 4.48507 4.54175 4.61549 4.64205 4.65648 4.68060 4.71287 4.76830 4.80424 4.90872 4.95667 4.98213 5.02433 5.08942 5.13095 5.14517 5.19848 5.28320 5.36359 5.40615 5.53672 5.59079 5.66250 5.68219 5.69802 5.82175 6.15457 6.16968 6.41359 7.05999 7.13441 7.72097 8.36182 9.22781 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002092 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.707233 B =13382.709162 C =13707.110175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.063 4.063 9 C -0.091 4.091 10 H 0.104 0.896 11 C -0.126 4.126 12 C -0.173 4.173 13 H 0.151 0.849 14 C 0.536 3.464 15 O -0.588 6.588 16 N -0.595 5.595 17 C 0.070 3.930 18 C 0.139 3.861 19 H 0.076 0.924 20 C -0.135 4.135 21 C 0.189 3.811 22 N -0.625 5.625 23 C -0.246 4.246 24 H 0.083 0.917 25 C -0.066 4.066 26 N -0.951 5.951 27 Si 0.982 3.018 28 H -0.279 1.279 29 H -0.294 1.294 30 H -0.273 1.273 31 C 0.134 3.866 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.009 0.991 49 H 0.017 0.983 50 H 0.248 0.752 51 H 0.044 0.956 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 20.868 -22.181 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.138 4.138 8 C -0.063 4.063 9 C -0.109 4.109 10 H 0.122 0.878 11 C -0.163 4.163 12 C -0.194 4.194 13 H 0.168 0.832 14 C 0.326 3.674 15 O -0.469 6.469 16 N -0.325 5.325 17 C -0.072 4.072 18 C 0.033 3.967 19 H 0.094 0.906 20 C -0.174 4.174 21 C 0.064 3.936 22 N -0.352 5.352 23 C -0.374 4.374 24 H 0.101 0.899 25 C -0.259 4.259 26 N -0.600 5.600 27 Si 0.810 3.190 28 H -0.205 1.205 29 H -0.220 1.220 30 H -0.199 1.199 31 C 0.008 3.992 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.839 20.278 -22.106 30.386 hybrid contribution 0.016 -1.212 1.218 1.719 sum -4.823 19.066 -20.888 28.689 Atomic orbital electron populations 1.21704 0.94300 1.01976 1.01958 1.20552 0.96674 0.92863 1.02541 1.19861 0.99316 0.96252 0.93132 1.21240 0.99917 0.95850 0.97433 1.21454 0.99131 0.94488 0.99229 1.21423 0.99924 1.00955 0.92132 1.21284 0.99041 0.93821 0.99631 1.19001 1.00616 0.94513 0.92136 1.21021 0.99897 1.01805 0.88207 0.87779 1.23247 0.97533 0.97456 0.98015 1.22346 0.98486 0.96619 1.01944 0.83203 1.20312 0.80005 0.87386 0.79738 1.90668 1.39176 1.46701 1.70381 1.47733 1.29060 1.20993 1.34760 1.22096 0.90412 0.90724 1.03935 1.21930 0.98383 0.86246 0.90118 0.90574 1.23047 0.97436 0.99186 0.97684 1.20855 0.94185 0.92975 0.85590 1.44661 1.57510 1.25938 1.07079 1.19414 1.26006 1.06548 0.85475 0.89886 1.25708 0.99905 0.97680 1.02611 1.70175 1.37243 1.16964 1.35599 0.85099 0.77527 0.77128 0.79246 1.20477 1.21960 1.19892 1.21834 0.96365 0.90275 0.90716 0.93370 0.91738 0.92202 0.90287 0.92540 0.84944 0.84120 0.83801 0.83935 0.84231 0.88704 0.90976 0.90795 0.87956 0.91224 0.89426 0.97315 0.96434 0.94263 0.93792 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.74 71.98 0.70 -1.81 16 2 C -0.09 -1.69 5.38 29.85 0.16 -1.53 16 3 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 4 C -0.13 -1.92 9.68 22.27 0.22 -1.71 16 5 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 6 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 7 C -0.12 -1.65 9.30 22.27 0.21 -1.44 16 8 C -0.06 -1.13 5.61 -19.87 -0.11 -1.24 16 9 C -0.09 -1.84 4.66 -11.54 -0.05 -1.90 16 10 H 0.10 2.66 5.47 -2.39 -0.01 2.65 16 11 C -0.13 -2.04 9.56 30.60 0.29 -1.75 16 12 C -0.17 -3.48 4.92 -11.54 -0.06 -3.54 16 13 H 0.15 2.24 6.44 -2.39 -0.02 2.22 16 14 C 0.54 16.02 7.46 87.66 0.65 16.67 16 15 O -0.59 -22.97 15.64 -3.05 -0.05 -23.01 16 16 N -0.59 -17.33 2.91 -814.82 -2.37 -19.70 16 17 C 0.07 1.39 8.87 127.77 1.13 2.52 16 18 C 0.14 5.25 3.45 46.39 0.16 5.41 16 19 H 0.08 3.36 7.02 -2.39 -0.02 3.35 16 20 C -0.13 -5.17 6.51 31.78 0.21 -4.96 16 21 C 0.19 9.63 5.37 86.73 0.47 10.09 16 22 N -0.62 -33.01 3.39 -692.01 -2.35 -35.36 16 23 C -0.25 -14.06 10.28 84.03 0.86 -13.19 16 24 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 25 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 26 N -0.95 -58.11 10.31 21.65 0.22 -57.89 16 27 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 30 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 31 C 0.13 5.66 6.79 86.86 0.59 6.25 16 32 H 0.05 0.93 7.17 -2.39 -0.02 0.91 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 1.29 8.05 -2.38 -0.02 1.28 16 36 H 0.06 1.33 6.94 -2.39 -0.02 1.31 16 37 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.14 1.11 8.06 -2.92 -0.02 1.09 16 39 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.14 1.30 6.02 -2.91 -0.02 1.29 16 41 H 0.14 1.34 6.17 -2.39 -0.01 1.33 16 42 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 44 H 0.07 1.57 6.41 -2.39 -0.02 1.55 16 45 H 0.10 1.35 5.99 -2.39 -0.01 1.34 16 46 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 47 H 0.09 2.90 6.40 -2.39 -0.02 2.89 16 48 H 0.01 0.50 7.38 -2.39 -0.02 0.48 16 49 H 0.02 0.97 7.50 -2.38 -0.02 0.95 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 51 H 0.04 1.69 7.00 -2.39 -0.02 1.67 16 52 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.59 404.52 4.64 -69.95 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.91 Total: 17.44 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.24 Total: 0.21 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.50 Total: -112.94 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.59 4.64 -69.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033373571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.688 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds