Wall clock time and date at job start Wed Apr 1 2020 02:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 115.55245 * 2 1 4 4 C 1.38234 * 120.00134 * 85.35990 * 3 2 1 5 5 C 1.38231 * 120.00174 * 179.78686 * 4 3 2 6 6 C 1.38238 * 119.99823 * 0.46226 * 5 4 3 7 7 C 1.38238 * 120.00075 * 359.77205 * 6 5 4 8 8 C 1.38232 * 119.99741 * 0.02562 * 7 6 5 9 9 C 1.53075 * 117.49466 * 214.26911 * 2 1 3 10 10 C 1.52993 * 59.98521 * 252.51496 * 9 2 1 11 11 H 1.09005 * 117.49698 * 107.49974 * 10 9 2 12 12 C 1.50705 * 117.50019 * 252.49469 * 10 9 2 13 13 O 1.21281 * 119.99686 * 358.21946 * 12 10 9 14 14 N 1.34778 * 119.99698 * 178.21740 * 12 10 9 15 15 C 1.46501 * 119.99400 * 180.02562 * 14 12 10 16 16 H 1.09004 * 109.32638 * 34.65284 * 15 14 12 17 17 C 1.47098 * 109.32640 * 154.13287 * 15 14 12 18 18 C 1.52574 * 114.32479 * 183.06313 * 17 15 14 19 19 C 1.50875 * 109.35435 * 274.98813 * 18 17 15 20 20 C 1.54297 * 110.23911 * 91.80303 * 19 18 17 21 21 N 1.47605 * 111.93798 * 319.69660 * 20 19 18 22 22 C 1.36940 * 118.64424 * 137.77660 * 21 20 19 23 23 H 1.07993 * 120.00170 * 206.87600 * 22 21 20 24 24 C 1.38818 * 119.99450 * 27.16035 * 22 21 20 25 25 N 1.31615 * 120.00097 * 15.67193 * 24 22 21 26 26 Si 1.86802 * 119.99473 * 195.67099 * 24 22 21 27 27 H 1.48505 * 109.46903 * 89.99924 * 26 24 22 28 28 H 1.48501 * 109.47200 * 209.99754 * 26 24 22 29 29 H 1.48493 * 109.47426 * 330.00118 * 26 24 22 30 30 C 1.44575 * 122.71434 * 317.49598 * 21 20 19 31 31 H 1.09000 * 109.47160 * 274.33407 * 1 2 3 32 32 H 1.09000 * 109.46941 * 34.33177 * 1 2 3 33 33 H 1.09001 * 109.47635 * 154.32615 * 1 2 3 34 34 H 1.08001 * 119.99367 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.00057 * 180.24893 * 5 4 3 36 36 H 1.08002 * 120.00059 * 179.78496 * 6 5 4 37 37 H 1.07995 * 120.00395 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.00098 * 179.97438 * 8 7 6 39 39 H 1.08999 * 117.51689 * 145.03958 * 9 2 1 40 40 H 1.09004 * 117.49397 * 0.02562 * 9 2 1 41 41 H 0.96995 * 120.00402 * 0.02562 * 14 12 10 42 42 H 1.08998 * 108.51183 * 304.31591 * 17 15 14 43 43 H 1.08996 * 108.51071 * 61.80486 * 17 15 14 44 44 H 1.09001 * 109.49068 * 34.95261 * 18 17 15 45 45 H 1.09000 * 109.48541 * 154.99773 * 18 17 15 46 46 H 1.09011 * 109.36510 * 212.07840 * 19 18 17 47 47 H 1.08998 * 109.37336 * 331.82019 * 19 18 17 48 48 H 1.08997 * 109.13979 * 199.01048 * 20 19 18 49 49 H 1.08998 * 108.96126 * 80.26233 * 20 19 18 50 50 H 0.97002 * 119.99554 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.45718 * 211.02435 * 30 21 20 52 52 H 1.09001 * 109.45418 * 330.97609 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.3907 2.0250 1.1932 5 6 2.9910 3.2702 1.1936 6 6 3.3718 3.8542 -0.0001 7 6 3.1567 3.1910 -1.1937 8 6 2.5602 1.9440 -1.1937 9 6 2.2366 -1.1221 -0.7646 10 6 2.2364 -1.1207 0.7653 11 1 1.6111 -1.8579 1.2692 12 6 3.5292 -0.7807 1.4611 13 8 4.5267 -0.5532 0.8098 14 7 3.5769 -0.7294 2.8071 15 6 4.8335 -0.3983 3.4834 16 1 5.3869 0.3239 2.8830 17 6 4.5381 0.1913 4.7982 18 6 5.7704 0.6482 5.5733 19 6 6.3464 -0.5220 6.3317 20 6 7.4182 -1.2343 5.4804 21 7 7.0208 -1.3318 4.0622 22 6 7.9615 -1.0840 3.0984 23 1 7.6574 -0.7223 2.1273 24 6 9.3055 -1.3034 3.3677 25 7 9.6585 -2.0264 4.4093 26 14 10.6131 -0.5723 2.2518 27 1 10.9894 0.7760 2.7475 28 1 11.8102 -1.4510 2.2502 29 1 10.0792 -0.4607 0.8707 30 6 5.6810 -1.6839 3.6486 31 1 -0.3633 0.0777 1.0247 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3634 -0.9262 -0.4452 34 1 2.0892 1.5706 2.1254 35 1 3.1593 3.7882 2.1261 36 1 3.8376 4.8286 -0.0001 37 1 3.4545 3.6470 -2.1263 38 1 2.3917 1.4259 -2.1263 39 1 3.1719 -0.8771 -1.2679 40 1 1.6112 -1.8597 -1.2676 41 1 2.7792 -0.9116 3.3279 42 1 3.8825 1.0499 4.6531 43 1 4.0067 -0.5480 5.3975 44 1 6.5158 1.0330 4.8773 45 1 5.4882 1.4334 6.2747 46 1 6.7982 -0.1656 7.2575 47 1 5.5499 -1.2279 6.5667 48 1 7.5773 -2.2385 5.8733 49 1 8.3525 -0.6772 5.5487 50 1 10.5977 -2.1800 4.5973 51 1 5.7225 -2.2158 2.6980 52 1 5.2246 -2.3244 4.4033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034322827.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:26 Heat of formation + Delta-G solvation = 31.772830 kcal Electronic energy + Delta-G solvation = -31295.691109 eV Core-core repulsion = 27454.104065 eV Total energy + Delta-G solvation = -3841.587044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.48118 -38.98078 -37.81798 -36.54815 -34.43640 -33.14736 -30.94614 -30.84633 -30.71221 -30.03501 -28.71690 -26.03372 -24.72284 -23.77475 -23.17764 -22.74531 -22.15799 -20.16447 -20.05785 -19.28207 -19.10850 -17.39280 -16.53924 -16.40899 -15.86600 -15.32078 -14.98473 -14.85505 -14.57322 -14.45313 -14.11337 -13.73218 -13.51543 -13.36891 -13.30769 -13.14287 -12.88766 -12.71913 -12.54057 -12.46781 -12.28746 -12.05315 -11.81376 -11.48459 -11.15779 -11.09437 -11.00650 -10.87208 -10.71862 -10.52951 -10.45288 -10.07903 -10.07338 -10.02162 -9.68441 -9.59602 -9.52016 -9.34645 -8.86169 -8.72242 -8.66054 -8.25845 -6.56579 -5.69181 -3.12812 1.37726 1.45583 2.78772 3.44799 3.45881 3.51962 3.57005 3.74530 3.82319 4.43846 4.60235 4.62632 4.71244 4.89590 4.99411 5.02864 5.14089 5.19052 5.29484 5.41126 5.43871 5.45505 5.48902 5.50324 5.57757 5.66206 5.66716 5.68932 5.81524 5.87287 6.02084 6.04901 6.05732 6.09106 6.10342 6.19194 6.36110 6.43486 6.50304 6.55129 6.60930 6.63313 6.67814 6.79905 6.82574 6.89868 6.98222 7.03042 7.19263 7.49215 7.76451 7.94206 7.98259 8.57962 8.70490 9.34515 9.99515 10.43559 11.38455 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003592 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.453412 B = 7793.124818 C = 8331.302585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.046 4.046 4 C -0.102 4.102 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.105 4.105 9 C -0.135 4.135 10 C -0.178 4.178 11 H 0.122 0.878 12 C 0.539 3.461 13 O -0.522 6.522 14 N -0.721 5.721 15 C 0.118 3.882 16 H 0.086 0.914 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.178 3.822 21 N -0.584 5.584 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.005 3.995 25 N -0.907 5.907 26 Si 0.898 3.102 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.278 1.278 30 C 0.158 3.842 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.389 0.611 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.024 0.976 49 H 0.073 0.927 50 H 0.252 0.748 51 H 0.047 0.953 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.882 6.791 -4.720 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.046 4.046 4 C -0.120 4.120 5 C -0.134 4.134 6 C -0.139 4.139 7 C -0.138 4.138 8 C -0.123 4.123 9 C -0.172 4.172 10 C -0.199 4.199 11 H 0.140 0.860 12 C 0.324 3.676 13 O -0.397 6.397 14 N -0.372 5.372 15 C 0.011 3.989 16 H 0.104 0.896 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.053 3.947 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.552 5.552 26 Si 0.728 3.272 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.203 1.203 30 C 0.029 3.971 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.222 0.778 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.952 6.886 -5.115 21.718 hybrid contribution 0.420 0.154 -0.093 0.457 sum -19.532 7.041 -5.209 21.406 Atomic orbital electron populations 1.21346 0.90682 1.02362 1.02297 1.20187 0.94336 0.87949 1.04330 1.18899 0.98616 0.93575 0.93465 1.20905 0.98930 0.94895 0.97315 1.21086 0.98595 0.95621 0.98062 1.21126 1.00026 1.00041 0.92724 1.21079 0.99412 0.95287 0.98059 1.20902 0.98634 0.95306 0.97462 1.23203 1.02832 0.99194 0.91945 1.22507 0.98272 1.02916 0.96190 0.86036 1.19378 0.88604 0.77190 0.82430 1.90757 1.35871 1.47999 1.65075 1.46072 1.13246 1.71817 1.06053 1.21185 0.83842 1.01276 0.92575 0.89578 1.20564 0.98544 0.99424 0.96269 1.20816 0.97056 0.97452 0.98504 1.22131 1.00111 0.97225 0.98767 1.21101 0.94448 0.97414 0.81780 1.43582 1.05221 1.79598 1.02070 1.19323 0.86731 1.37045 0.95199 0.91346 1.25012 0.97887 0.98379 0.98047 1.70077 1.15706 1.39520 1.29856 0.86334 0.81464 0.78620 0.80743 1.21515 1.21866 1.20321 1.20911 0.86171 0.92126 0.97921 0.91878 0.91666 0.91832 0.86525 0.86236 0.86318 0.86242 0.86245 0.87204 0.87845 0.77800 0.93592 0.92984 0.90515 0.93505 0.92989 0.93745 0.95745 0.90821 0.93842 0.93455 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.84 37.15 0.37 -0.48 16 2 C -0.07 -0.71 2.18 -155.62 -0.34 -1.05 16 3 C -0.05 -0.57 4.33 -104.62 -0.45 -1.02 16 4 C -0.10 -1.32 8.51 -39.59 -0.34 -1.66 16 5 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 6 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 7 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 8 C -0.11 -1.29 9.48 -39.58 -0.38 -1.67 16 9 C -0.13 -1.50 9.16 -26.70 -0.24 -1.75 16 10 C -0.18 -2.09 5.89 -91.77 -0.54 -2.63 16 11 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 12 C 0.54 8.70 5.63 -10.98 -0.06 8.64 16 13 O -0.52 -11.13 15.83 5.56 0.09 -11.04 16 14 N -0.72 -10.61 5.05 -55.61 -0.28 -10.89 16 15 C 0.12 2.14 2.34 -69.78 -0.16 1.97 16 16 H 0.09 1.92 7.56 -51.93 -0.39 1.53 16 17 C -0.11 -1.71 4.55 -29.78 -0.14 -1.85 16 18 C -0.10 -1.73 5.51 -28.02 -0.15 -1.88 16 19 C -0.14 -2.65 5.71 -27.12 -0.15 -2.81 16 20 C 0.18 4.24 4.70 -2.76 -0.01 4.23 16 21 N -0.58 -14.75 2.26 -171.87 -0.39 -15.14 16 22 C -0.25 -7.22 9.43 -15.06 -0.14 -7.36 16 23 H 0.07 2.04 7.88 -52.49 -0.41 1.63 16 24 C 0.00 0.14 4.86 -17.43 -0.08 0.05 16 25 N -0.91 -26.79 11.06 55.49 0.61 -26.18 16 26 Si 0.90 22.81 29.58 -169.99 -5.03 17.79 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 30 C 0.16 3.45 5.24 -4.09 -0.02 3.43 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 34 H 0.12 1.41 7.99 -52.49 -0.42 0.99 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.11 1.50 7.66 -51.93 -0.40 1.10 16 40 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 41 H 0.39 4.37 8.58 -40.82 -0.35 4.02 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 44 H 0.08 1.57 7.49 -51.93 -0.39 1.18 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 47 H 0.04 0.77 7.32 -51.93 -0.38 0.39 16 48 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 49 H 0.07 1.97 6.38 -51.93 -0.33 1.64 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.05 1.15 7.98 -51.93 -0.41 0.74 16 52 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 LS Contribution 410.18 15.07 6.18 6.18 Total: -1.00 -33.20 410.18 -11.76 -44.95 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.89 Total: 5.72 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -4.05 Total: -11.40 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.06 Total: -52.20 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.79 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.20 -11.76 -44.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034322827.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.726 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds