Wall clock time and date at job start Wed Apr 1 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 115.55245 * 2 1 4 4 C 1.38234 * 120.00134 * 85.35990 * 3 2 1 5 5 C 1.38231 * 120.00174 * 179.78686 * 4 3 2 6 6 C 1.38238 * 119.99823 * 0.46226 * 5 4 3 7 7 C 1.38238 * 120.00075 * 359.77205 * 6 5 4 8 8 C 1.38232 * 119.99741 * 0.02562 * 7 6 5 9 9 C 1.53075 * 117.49466 * 214.26911 * 2 1 3 10 10 C 1.52993 * 59.98521 * 252.51496 * 9 2 1 11 11 H 1.09005 * 117.49698 * 107.49974 * 10 9 2 12 12 C 1.50705 * 117.50019 * 252.49469 * 10 9 2 13 13 O 1.21281 * 119.99686 * 358.21946 * 12 10 9 14 14 N 1.34778 * 119.99698 * 178.21740 * 12 10 9 15 15 C 1.46501 * 119.99400 * 180.02562 * 14 12 10 16 16 H 1.09004 * 109.32638 * 34.65284 * 15 14 12 17 17 C 1.47098 * 109.32640 * 154.13287 * 15 14 12 18 18 C 1.52574 * 114.32479 * 183.06313 * 17 15 14 19 19 C 1.50875 * 109.35435 * 274.98813 * 18 17 15 20 20 C 1.54297 * 110.23911 * 91.80303 * 19 18 17 21 21 N 1.47605 * 111.93798 * 319.69660 * 20 19 18 22 22 C 1.36940 * 118.64424 * 137.77660 * 21 20 19 23 23 H 1.07993 * 120.00170 * 206.87600 * 22 21 20 24 24 C 1.38818 * 119.99450 * 27.16035 * 22 21 20 25 25 N 1.31615 * 120.00097 * 15.67193 * 24 22 21 26 26 Si 1.86802 * 119.99473 * 195.67099 * 24 22 21 27 27 H 1.48505 * 109.46903 * 89.99924 * 26 24 22 28 28 H 1.48501 * 109.47200 * 209.99754 * 26 24 22 29 29 H 1.48493 * 109.47426 * 330.00118 * 26 24 22 30 30 C 1.44575 * 122.71434 * 317.49598 * 21 20 19 31 31 H 1.09000 * 109.47160 * 274.33407 * 1 2 3 32 32 H 1.09000 * 109.46941 * 34.33177 * 1 2 3 33 33 H 1.09001 * 109.47635 * 154.32615 * 1 2 3 34 34 H 1.08001 * 119.99367 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.00057 * 180.24893 * 5 4 3 36 36 H 1.08002 * 120.00059 * 179.78496 * 6 5 4 37 37 H 1.07995 * 120.00395 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.00098 * 179.97438 * 8 7 6 39 39 H 1.08999 * 117.51689 * 145.03958 * 9 2 1 40 40 H 1.09004 * 117.49397 * 0.02562 * 9 2 1 41 41 H 0.96995 * 120.00402 * 0.02562 * 14 12 10 42 42 H 1.08998 * 108.51183 * 304.31591 * 17 15 14 43 43 H 1.08996 * 108.51071 * 61.80486 * 17 15 14 44 44 H 1.09001 * 109.49068 * 34.95261 * 18 17 15 45 45 H 1.09000 * 109.48541 * 154.99773 * 18 17 15 46 46 H 1.09011 * 109.36510 * 212.07840 * 19 18 17 47 47 H 1.08998 * 109.37336 * 331.82019 * 19 18 17 48 48 H 1.08997 * 109.13979 * 199.01048 * 20 19 18 49 49 H 1.08998 * 108.96126 * 80.26233 * 20 19 18 50 50 H 0.97002 * 119.99554 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.45718 * 211.02435 * 30 21 20 52 52 H 1.09001 * 109.45418 * 330.97609 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.3907 2.0250 1.1932 5 6 2.9910 3.2702 1.1936 6 6 3.3718 3.8542 -0.0001 7 6 3.1567 3.1910 -1.1937 8 6 2.5602 1.9440 -1.1937 9 6 2.2366 -1.1221 -0.7646 10 6 2.2364 -1.1207 0.7653 11 1 1.6111 -1.8579 1.2692 12 6 3.5292 -0.7807 1.4611 13 8 4.5267 -0.5532 0.8098 14 7 3.5769 -0.7294 2.8071 15 6 4.8335 -0.3983 3.4834 16 1 5.3869 0.3239 2.8830 17 6 4.5381 0.1913 4.7982 18 6 5.7704 0.6482 5.5733 19 6 6.3464 -0.5220 6.3317 20 6 7.4182 -1.2343 5.4804 21 7 7.0208 -1.3318 4.0622 22 6 7.9615 -1.0840 3.0984 23 1 7.6574 -0.7223 2.1273 24 6 9.3055 -1.3034 3.3677 25 7 9.6585 -2.0264 4.4093 26 14 10.6131 -0.5723 2.2518 27 1 10.9894 0.7760 2.7475 28 1 11.8102 -1.4510 2.2502 29 1 10.0792 -0.4607 0.8707 30 6 5.6810 -1.6839 3.6486 31 1 -0.3633 0.0777 1.0247 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3634 -0.9262 -0.4452 34 1 2.0892 1.5706 2.1254 35 1 3.1593 3.7882 2.1261 36 1 3.8376 4.8286 -0.0001 37 1 3.4545 3.6470 -2.1263 38 1 2.3917 1.4259 -2.1263 39 1 3.1719 -0.8771 -1.2679 40 1 1.6112 -1.8597 -1.2676 41 1 2.7792 -0.9116 3.3279 42 1 3.8825 1.0499 4.6531 43 1 4.0067 -0.5480 5.3975 44 1 6.5158 1.0330 4.8773 45 1 5.4882 1.4334 6.2747 46 1 6.7982 -0.1656 7.2575 47 1 5.5499 -1.2279 6.5667 48 1 7.5773 -2.2385 5.8733 49 1 8.3525 -0.6772 5.5487 50 1 10.5977 -2.1800 4.5973 51 1 5.7225 -2.2158 2.6980 52 1 5.2246 -2.3244 4.4033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034322827.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:23 Heat of formation + Delta-G solvation = 13.214357 kcal Electronic energy + Delta-G solvation = -31296.495865 eV Core-core repulsion = 27454.104065 eV Total energy + Delta-G solvation = -3842.391800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.57996 -40.21982 -39.18667 -37.67249 -36.15125 -34.78996 -32.89980 -31.87843 -31.76727 -31.40650 -29.42960 -27.93837 -26.24404 -25.33776 -24.22922 -24.05447 -23.21381 -21.59664 -21.26929 -20.83462 -20.27404 -18.61388 -18.48422 -17.54461 -17.26395 -16.66455 -16.43381 -16.15510 -15.86692 -15.67590 -15.52353 -15.15564 -14.93541 -14.74882 -14.33073 -14.26199 -14.12894 -13.96038 -13.80655 -13.67934 -13.62052 -13.11471 -13.03911 -13.02627 -12.85230 -12.70761 -12.48479 -12.35417 -12.07130 -12.05152 -11.91112 -11.65346 -11.48632 -11.40118 -11.28652 -11.15372 -10.99289 -10.64999 -10.50747 -10.05417 -9.80709 -9.61119 -8.64026 -7.89904 -5.35924 0.44477 0.50597 1.38553 1.39058 1.49631 1.62035 2.22200 2.48933 2.79361 2.87229 3.22409 3.55028 3.70682 3.75660 3.80644 3.91978 4.01877 4.08661 4.12713 4.14537 4.24819 4.26382 4.29508 4.43474 4.52945 4.57542 4.69382 4.71887 4.75606 4.78206 4.85432 4.95759 4.98514 4.99172 5.04537 5.12485 5.13865 5.14574 5.17806 5.23705 5.28846 5.35912 5.37224 5.45956 5.58089 5.61052 5.61404 5.66419 5.68968 5.72633 5.81205 6.12124 6.38761 6.73984 7.16560 7.48045 7.93151 8.27750 9.14042 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003592 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.453412 B = 7793.124818 C = 8331.302585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.051 4.051 3 C -0.060 4.060 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.122 4.122 9 C -0.139 4.139 10 C -0.181 4.181 11 H 0.159 0.841 12 C 0.535 3.465 13 O -0.583 6.583 14 N -0.706 5.706 15 C 0.142 3.858 16 H 0.038 0.962 17 C -0.107 4.107 18 C -0.097 4.097 19 C -0.130 4.130 20 C 0.186 3.814 21 N -0.597 5.597 22 C -0.260 4.260 23 H 0.043 0.957 24 C -0.040 4.040 25 N -0.929 5.929 26 Si 0.955 3.045 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.283 1.283 30 C 0.160 3.840 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.413 0.587 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.066 0.934 48 H -0.004 1.004 49 H 0.037 0.963 50 H 0.250 0.750 51 H 0.010 0.990 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.154 7.188 -3.812 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.052 4.052 3 C -0.060 4.060 4 C -0.136 4.136 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.177 4.177 10 C -0.202 4.202 11 H 0.176 0.824 12 C 0.322 3.678 13 O -0.463 6.463 14 N -0.358 5.358 15 C 0.034 3.966 16 H 0.056 0.944 17 C -0.145 4.145 18 C -0.136 4.136 19 C -0.169 4.169 20 C 0.061 3.939 21 N -0.319 5.319 22 C -0.391 4.391 23 H 0.061 0.939 24 C -0.236 4.236 25 N -0.575 5.575 26 Si 0.783 3.217 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.209 1.209 30 C 0.031 3.969 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.155 0.845 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.014 0.986 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.028 0.972 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.297 7.282 -4.179 24.764 hybrid contribution 1.457 0.016 -0.432 1.520 sum -21.840 7.298 -4.611 23.484 Atomic orbital electron populations 1.21385 0.87821 1.03544 1.03412 1.20300 0.95978 0.86346 1.02531 1.19233 0.98642 0.94646 0.93456 1.21093 0.99451 0.95242 0.97811 1.21376 0.98774 0.96009 0.98860 1.21431 1.00185 1.00965 0.92764 1.21409 0.99120 0.95405 0.98960 1.21188 0.98917 0.95763 0.98136 1.23271 1.02224 1.00657 0.91504 1.22556 0.96494 1.04776 0.96371 0.82388 1.20196 0.89477 0.75599 0.82516 1.90741 1.38546 1.50636 1.66349 1.45844 1.12839 1.71094 1.06011 1.20563 0.84384 0.97860 0.93789 0.94389 1.20504 0.98442 1.01124 0.94393 1.20797 0.96650 0.97722 0.98405 1.21990 0.98931 0.97654 0.98293 1.20920 0.95305 0.95946 0.81727 1.43715 1.05985 1.80020 1.02150 1.19286 0.87974 1.36726 0.95125 0.93922 1.25608 0.99356 0.99019 0.99576 1.70199 1.15782 1.40489 1.31049 0.85463 0.79202 0.78204 0.78804 1.20681 1.21250 1.20870 1.20992 0.85485 0.94019 0.96396 0.90602 0.91563 0.89767 0.85777 0.85113 0.84646 0.84405 0.85163 0.90550 0.84539 0.75033 0.90784 0.90097 0.94553 0.89875 0.91066 0.91512 0.98624 0.94420 0.94035 0.97189 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.84 71.98 0.71 -0.51 16 2 C -0.05 -0.97 2.18 -52.90 -0.12 -1.08 16 3 C -0.06 -1.46 4.33 -19.86 -0.09 -1.55 16 4 C -0.12 -2.97 8.51 22.27 0.19 -2.78 16 5 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 6 C -0.14 -3.28 10.05 22.27 0.22 -3.05 16 7 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 8 C -0.12 -3.00 9.48 22.27 0.21 -2.79 16 9 C -0.14 -2.93 9.16 30.62 0.28 -2.64 16 10 C -0.18 -3.90 5.89 -11.54 -0.07 -3.97 16 11 H 0.16 2.24 8.14 -2.38 -0.02 2.22 16 12 C 0.53 17.18 5.63 87.66 0.49 17.68 16 13 O -0.58 -26.18 15.83 -3.03 -0.05 -26.23 16 14 N -0.71 -19.84 5.05 -448.25 -2.27 -22.10 16 15 C 0.14 5.12 2.34 43.79 0.10 5.23 16 16 H 0.04 1.77 7.56 -2.38 -0.02 1.75 16 17 C -0.11 -3.02 4.55 28.62 0.13 -2.89 16 18 C -0.10 -3.16 5.51 29.76 0.16 -3.00 16 19 C -0.13 -4.57 5.71 30.34 0.17 -4.39 16 20 C 0.19 9.09 4.70 86.61 0.41 9.50 16 21 N -0.60 -31.37 2.26 -697.68 -1.58 -32.95 16 22 C -0.26 -15.66 9.43 84.03 0.79 -14.87 16 23 H 0.04 2.74 7.88 -2.91 -0.02 2.72 16 24 C -0.04 -2.38 4.86 84.86 0.41 -1.96 16 25 N -0.93 -56.88 11.06 21.65 0.24 -56.64 16 26 Si 0.95 48.68 29.58 68.60 2.03 50.71 16 27 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 29 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 30 C 0.16 7.11 5.24 87.38 0.46 7.57 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.08 0.67 7.90 -2.39 -0.02 0.65 16 34 H 0.12 2.79 7.99 -2.91 -0.02 2.77 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.08 2.16 7.66 -2.39 -0.02 2.14 16 40 H 0.14 1.91 8.05 -2.38 -0.02 1.89 16 41 H 0.41 7.86 8.58 -92.71 -0.80 7.07 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.90 7.36 -2.39 -0.02 1.88 16 44 H 0.04 1.48 7.49 -2.39 -0.02 1.46 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.07 2.07 7.32 -2.39 -0.02 2.06 16 48 H 0.00 -0.23 8.03 -2.39 -0.02 -0.25 16 49 H 0.04 2.09 6.38 -2.39 -0.02 2.07 16 50 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 51 H 0.01 0.50 7.98 -2.39 -0.02 0.48 16 52 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 Total: -1.00 -79.47 410.18 3.40 -76.06 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.10 Total: 22.66 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 4.92 Total: -11.52 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -3.60 Total: -111.69 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -79.47 3.40 -76.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034322827.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.279 kcal (2) G-P(sol) polarization free energy of solvation -79.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds