Wall clock time and date at job start Wed Apr 1 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 115.55172 * 2 1 4 4 C 1.38226 * 120.00336 * 85.22404 * 3 2 1 5 5 C 1.38238 * 120.00293 * 179.76713 * 4 3 2 6 6 C 1.38232 * 119.99656 * 0.50732 * 5 4 3 7 7 C 1.38238 * 120.00115 * 359.74524 * 6 5 4 8 8 C 1.38228 * 119.99792 * 0.02562 * 7 6 5 9 9 C 1.53007 * 117.49560 * 214.29092 * 2 1 3 10 10 C 1.52999 * 60.00053 * 252.50811 * 9 2 1 11 11 H 1.09006 * 117.51478 * 107.48133 * 10 9 2 12 12 C 1.50703 * 117.50084 * 252.51162 * 10 9 2 13 13 O 1.21274 * 120.00032 * 342.39104 * 12 10 9 14 14 N 1.34780 * 119.99930 * 162.39290 * 12 10 9 15 15 C 1.46501 * 119.99687 * 179.97438 * 14 12 10 16 16 H 1.09000 * 108.45928 * 327.00834 * 15 14 12 17 17 C 1.52530 * 108.52033 * 209.43965 * 15 14 12 18 18 C 1.50125 * 105.41514 * 149.35199 * 17 15 14 19 19 C 1.54846 * 110.80865 * 97.68844 * 18 17 15 20 20 C 1.54905 * 110.14280 * 321.12826 * 19 18 17 21 21 N 1.43434 * 116.07909 * 318.64483 * 20 19 18 22 22 C 1.36938 * 120.53612 * 271.59095 * 21 20 19 23 23 H 1.07992 * 120.00159 * 30.81088 * 22 21 20 24 24 C 1.38815 * 119.99666 * 210.81079 * 22 21 20 25 25 N 1.31619 * 120.00186 * 20.92114 * 24 22 21 26 26 Si 1.86807 * 119.99856 * 200.92561 * 24 22 21 27 27 H 1.48495 * 109.46871 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47109 * 119.99963 * 26 24 22 29 29 H 1.48495 * 109.46876 * 239.99840 * 26 24 22 30 30 C 1.46240 * 108.52261 * 84.72522 * 15 14 12 31 31 H 1.09007 * 109.46890 * 274.32881 * 1 2 3 32 32 H 1.08998 * 109.47088 * 34.33104 * 1 2 3 33 33 H 1.08999 * 109.47230 * 154.33060 * 1 2 3 34 34 H 1.07999 * 120.00051 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00194 * 180.23501 * 5 4 3 36 36 H 1.08006 * 119.99781 * 179.72857 * 6 5 4 37 37 H 1.07998 * 119.99795 * 179.97438 * 7 6 5 38 38 H 1.08000 * 119.99749 * 179.97438 * 8 7 6 39 39 H 1.09002 * 117.49541 * 145.01791 * 9 2 1 40 40 H 1.08988 * 117.50001 * 0.02562 * 9 2 1 41 41 H 0.97006 * 119.99508 * 359.71901 * 14 12 10 42 42 H 1.08997 * 110.24801 * 268.33363 * 17 15 14 43 43 H 1.09008 * 110.24598 * 30.38185 * 17 15 14 44 44 H 1.08996 * 109.21307 * 337.34339 * 18 17 15 45 45 H 1.08999 * 109.16918 * 218.00270 * 18 17 15 46 46 H 1.09008 * 109.35584 * 200.92757 * 19 18 17 47 47 H 1.08997 * 109.36098 * 81.33371 * 19 18 17 48 48 H 1.08992 * 108.16034 * 196.92813 * 20 19 18 49 49 H 1.09002 * 108.15637 * 80.35434 * 20 19 18 50 50 H 0.97006 * 119.99964 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.84108 * 299.15481 * 30 15 14 52 52 H 1.08997 * 109.84794 * 60.06621 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.3882 2.0262 1.1929 5 6 2.9888 3.2713 1.1933 6 6 3.3717 3.8542 -0.0002 7 6 3.1587 3.1899 -1.1936 8 6 2.5624 1.9429 -1.1935 9 6 2.2364 -1.1213 -0.7647 10 6 2.2365 -1.1208 0.7653 11 1 1.6112 -1.8579 1.2692 12 6 3.5293 -0.7807 1.4610 13 8 4.5773 -0.8339 0.8530 14 7 3.5209 -0.4174 2.7589 15 6 4.7778 -0.0873 3.4353 16 1 5.5698 -0.7056 3.0128 17 6 4.6365 -0.4304 4.9147 18 6 6.0155 -0.8113 5.3696 19 6 6.7179 0.3851 6.0574 20 6 6.3809 1.7012 5.3131 21 7 6.3781 1.6325 3.8804 22 6 7.5288 1.8514 3.1711 23 1 8.4851 1.5908 3.5997 24 6 7.4659 2.4084 1.9011 25 7 6.4041 3.0948 1.5354 26 14 8.8882 2.1835 0.7111 27 1 9.9540 1.3785 1.3602 28 1 8.4087 1.4812 -0.5062 29 1 9.4327 3.5125 0.3338 30 6 5.0929 1.3161 3.1710 31 1 -0.3633 0.0776 1.0248 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3633 -0.9262 -0.4452 34 1 2.0847 1.5728 2.1249 35 1 3.1549 3.7904 2.1256 36 1 3.8370 4.8289 -0.0002 37 1 3.4575 3.6456 -2.1260 38 1 2.3957 1.4240 -2.1260 39 1 3.1714 -0.8756 -1.2681 40 1 1.6112 -1.8587 -1.2680 41 1 2.6821 -0.3709 3.2440 42 1 4.2818 0.4372 5.4710 43 1 3.9517 -1.2687 5.0438 44 1 6.6037 -1.1250 4.5072 45 1 5.9439 -1.6390 6.0751 46 1 7.7965 0.2279 6.0429 47 1 6.3791 0.4575 7.0908 48 1 7.1052 2.4575 5.6155 49 1 5.3951 2.0330 5.6392 50 1 6.3603 3.4843 0.6481 51 1 5.2136 1.4727 2.0991 52 1 4.2934 1.9526 3.5501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034322834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:32 Heat of formation + Delta-G solvation = 41.366115 kcal Electronic energy + Delta-G solvation = -32571.530573 eV Core-core repulsion = 28730.359525 eV Total energy + Delta-G solvation = -3841.171048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.28979 -38.75338 -37.70304 -36.33188 -34.16308 -33.23181 -30.71387 -30.36444 -30.34697 -29.88770 -28.48612 -26.14589 -24.39862 -24.15093 -22.74978 -22.52679 -21.77753 -20.07493 -19.96830 -19.24728 -18.72818 -17.19322 -16.51773 -16.01345 -15.55074 -15.14050 -14.83834 -14.57957 -14.35222 -14.19825 -13.84033 -13.80508 -13.45289 -13.19058 -13.06525 -12.84480 -12.73129 -12.51527 -12.42899 -12.31400 -11.90785 -11.84019 -11.63919 -11.39455 -11.09722 -10.89172 -10.70967 -10.70105 -10.66115 -10.37265 -10.17160 -10.15278 -10.06142 -9.84404 -9.73611 -9.56476 -9.53354 -9.13387 -8.43180 -8.29461 -8.25978 -8.16522 -6.54375 -5.68352 -3.12179 1.89768 2.00087 3.03984 3.46710 3.56474 3.58276 3.58619 3.93156 4.32252 4.61831 4.72015 4.81781 4.91160 5.11423 5.29107 5.34181 5.42143 5.43956 5.52263 5.56472 5.62347 5.66219 5.68383 5.71349 5.71714 5.81082 5.84598 6.02825 6.06569 6.08268 6.12103 6.16155 6.18747 6.26976 6.29855 6.45780 6.53269 6.56066 6.58039 6.73008 6.84805 6.92272 6.96106 7.00869 7.05706 7.07058 7.13296 7.18246 7.28999 7.56143 7.86779 7.93974 8.10088 8.60878 8.85734 9.26989 9.97164 10.51342 11.37502 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.005626 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.817029 B = 4975.570092 C = 6370.328811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.063 4.063 3 C -0.061 4.061 4 C -0.102 4.102 5 C -0.077 4.077 6 C -0.097 4.097 7 C -0.124 4.124 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.179 4.179 11 H 0.121 0.879 12 C 0.541 3.459 13 O -0.526 6.526 14 N -0.726 5.726 15 C 0.129 3.871 16 H 0.080 0.920 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.146 4.146 20 C 0.156 3.844 21 N -0.577 5.577 22 C -0.263 4.263 23 H 0.060 0.940 24 C 0.019 3.981 25 N -0.873 5.873 26 Si 0.888 3.112 27 H -0.279 1.279 28 H -0.288 1.288 29 H -0.293 1.293 30 C 0.145 3.855 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.388 0.612 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.023 0.977 50 H 0.251 0.749 51 H 0.116 0.884 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.388 -5.030 0.430 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.063 4.063 3 C -0.061 4.061 4 C -0.121 4.121 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.132 4.132 9 C -0.175 4.175 10 C -0.201 4.201 11 H 0.139 0.861 12 C 0.326 3.674 13 O -0.401 6.401 14 N -0.377 5.377 15 C 0.025 3.975 16 H 0.098 0.902 17 C -0.159 4.159 18 C -0.143 4.143 19 C -0.187 4.187 20 C 0.027 3.973 21 N -0.297 5.297 22 C -0.392 4.392 23 H 0.078 0.922 24 C -0.182 4.182 25 N -0.515 5.515 26 Si 0.718 3.282 27 H -0.204 1.204 28 H -0.215 1.215 29 H -0.220 1.220 30 C 0.020 3.980 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.221 0.779 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.042 0.958 50 H 0.061 0.939 51 H 0.133 0.867 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.610 -4.947 -0.178 14.483 hybrid contribution 0.557 -0.327 -0.298 0.711 sum -13.053 -5.274 -0.476 14.086 Atomic orbital electron populations 1.21338 0.90999 1.02094 1.02149 1.20175 0.94183 0.88327 1.03661 1.18783 1.00166 0.93457 0.93712 1.20801 0.99581 0.95076 0.96599 1.20943 0.95595 0.94911 0.98019 1.21006 0.97980 1.00037 0.92444 1.20989 0.99876 0.95365 0.97984 1.20729 0.99961 0.95554 0.96977 1.23146 1.02800 0.99533 0.91992 1.22484 0.98333 1.03192 0.96055 0.86077 1.19406 0.89218 0.76711 0.82052 1.90746 1.32658 1.51839 1.64872 1.46399 1.10534 1.69568 1.11208 1.21109 0.84762 1.01257 0.90404 0.90189 1.21340 0.97715 1.00671 0.96159 1.21282 0.95640 0.97248 1.00173 1.22935 0.99661 0.98156 0.97911 1.20323 0.98022 0.93142 0.85799 1.43736 1.06694 1.80183 0.99108 1.18973 0.85799 1.35660 0.98801 0.92239 1.24902 0.96968 0.96850 0.99455 1.69995 1.29053 1.33288 1.19203 0.86465 0.82482 0.77209 0.82004 1.20436 1.21473 1.22003 1.20668 0.86191 0.88757 1.02351 0.91982 0.91650 0.92200 0.87137 0.86330 0.86654 0.86963 0.87064 0.87495 0.88150 0.77919 0.91244 0.92554 0.91635 0.94004 0.93077 0.93435 0.94467 0.95833 0.93873 0.86674 0.96524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.84 37.16 0.37 -0.68 16 2 C -0.06 -0.81 2.18 -155.66 -0.34 -1.15 16 3 C -0.06 -0.97 4.39 -104.63 -0.46 -1.43 16 4 C -0.10 -1.71 8.37 -39.59 -0.33 -2.04 16 5 C -0.08 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.10 -1.71 10.05 -39.58 -0.40 -2.10 16 7 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 8 C -0.11 -1.83 9.48 -39.58 -0.38 -2.21 16 9 C -0.14 -1.82 9.15 -26.73 -0.24 -2.06 16 10 C -0.18 -2.45 5.89 -91.77 -0.54 -2.99 16 11 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.54 9.81 5.64 -10.98 -0.06 9.75 16 13 O -0.53 -12.43 15.92 5.56 0.09 -12.34 16 14 N -0.73 -11.90 3.91 -57.21 -0.22 -12.12 16 15 C 0.13 2.51 2.00 -71.38 -0.14 2.37 16 16 H 0.08 1.88 6.23 -51.93 -0.32 1.56 16 17 C -0.12 -1.95 5.25 -28.40 -0.15 -2.10 16 18 C -0.11 -1.80 5.65 -27.19 -0.15 -1.95 16 19 C -0.15 -2.56 6.41 -24.75 -0.16 -2.72 16 20 C 0.16 3.26 5.17 -4.66 -0.02 3.23 16 21 N -0.58 -14.11 2.56 -175.08 -0.45 -14.55 16 22 C -0.26 -7.27 9.54 -15.06 -0.14 -7.41 16 23 H 0.06 1.67 7.91 -52.49 -0.42 1.25 16 24 C 0.02 0.53 4.90 -17.43 -0.09 0.45 16 25 N -0.87 -24.40 11.32 55.49 0.63 -23.77 16 26 Si 0.89 22.83 29.60 -169.99 -5.03 17.79 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 C 0.15 3.32 4.79 -5.20 -0.02 3.29 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 34 H 0.11 1.70 7.13 -52.49 -0.37 1.33 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 36 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.72 7.77 -51.93 -0.40 1.32 16 40 H 0.10 1.02 8.05 -51.94 -0.42 0.60 16 41 H 0.39 5.02 8.46 -40.82 -0.35 4.68 16 42 H 0.07 1.11 6.29 -51.93 -0.33 0.78 16 43 H 0.06 0.78 8.04 -51.92 -0.42 0.36 16 44 H 0.06 1.29 6.82 -51.93 -0.35 0.94 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 49 H 0.02 0.46 6.89 -51.93 -0.36 0.11 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.12 3.10 5.57 -51.93 -0.29 2.81 16 52 H 0.02 0.38 8.13 -51.93 -0.42 -0.05 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -31.75 405.93 -11.56 -43.31 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.63 Total: 9.55 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -4.06 Total: -13.98 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.04 Total: -50.45 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.75 -11.56 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034322834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.680 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds