Wall clock time and date at job start Wed Apr 1 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 115.55172 * 2 1 4 4 C 1.38226 * 120.00336 * 85.22404 * 3 2 1 5 5 C 1.38238 * 120.00293 * 179.76713 * 4 3 2 6 6 C 1.38232 * 119.99656 * 0.50732 * 5 4 3 7 7 C 1.38238 * 120.00115 * 359.74524 * 6 5 4 8 8 C 1.38228 * 119.99792 * 0.02562 * 7 6 5 9 9 C 1.53007 * 117.49560 * 214.29092 * 2 1 3 10 10 C 1.52999 * 60.00053 * 252.50811 * 9 2 1 11 11 H 1.09006 * 117.51478 * 107.48133 * 10 9 2 12 12 C 1.50703 * 117.50084 * 252.51162 * 10 9 2 13 13 O 1.21274 * 120.00032 * 342.39104 * 12 10 9 14 14 N 1.34780 * 119.99930 * 162.39290 * 12 10 9 15 15 C 1.46501 * 119.99687 * 179.97438 * 14 12 10 16 16 H 1.09000 * 108.45928 * 327.00834 * 15 14 12 17 17 C 1.52530 * 108.52033 * 209.43965 * 15 14 12 18 18 C 1.50125 * 105.41514 * 149.35199 * 17 15 14 19 19 C 1.54846 * 110.80865 * 97.68844 * 18 17 15 20 20 C 1.54905 * 110.14280 * 321.12826 * 19 18 17 21 21 N 1.43434 * 116.07909 * 318.64483 * 20 19 18 22 22 C 1.36938 * 120.53612 * 271.59095 * 21 20 19 23 23 H 1.07992 * 120.00159 * 30.81088 * 22 21 20 24 24 C 1.38815 * 119.99666 * 210.81079 * 22 21 20 25 25 N 1.31619 * 120.00186 * 20.92114 * 24 22 21 26 26 Si 1.86807 * 119.99856 * 200.92561 * 24 22 21 27 27 H 1.48495 * 109.46871 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47109 * 119.99963 * 26 24 22 29 29 H 1.48495 * 109.46876 * 239.99840 * 26 24 22 30 30 C 1.46240 * 108.52261 * 84.72522 * 15 14 12 31 31 H 1.09007 * 109.46890 * 274.32881 * 1 2 3 32 32 H 1.08998 * 109.47088 * 34.33104 * 1 2 3 33 33 H 1.08999 * 109.47230 * 154.33060 * 1 2 3 34 34 H 1.07999 * 120.00051 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00194 * 180.23501 * 5 4 3 36 36 H 1.08006 * 119.99781 * 179.72857 * 6 5 4 37 37 H 1.07998 * 119.99795 * 179.97438 * 7 6 5 38 38 H 1.08000 * 119.99749 * 179.97438 * 8 7 6 39 39 H 1.09002 * 117.49541 * 145.01791 * 9 2 1 40 40 H 1.08988 * 117.50001 * 0.02562 * 9 2 1 41 41 H 0.97006 * 119.99508 * 359.71901 * 14 12 10 42 42 H 1.08997 * 110.24801 * 268.33363 * 17 15 14 43 43 H 1.09008 * 110.24598 * 30.38185 * 17 15 14 44 44 H 1.08996 * 109.21307 * 337.34339 * 18 17 15 45 45 H 1.08999 * 109.16918 * 218.00270 * 18 17 15 46 46 H 1.09008 * 109.35584 * 200.92757 * 19 18 17 47 47 H 1.08997 * 109.36098 * 81.33371 * 19 18 17 48 48 H 1.08992 * 108.16034 * 196.92813 * 20 19 18 49 49 H 1.09002 * 108.15637 * 80.35434 * 20 19 18 50 50 H 0.97006 * 119.99964 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.84108 * 299.15481 * 30 15 14 52 52 H 1.08997 * 109.84794 * 60.06621 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.3882 2.0262 1.1929 5 6 2.9888 3.2713 1.1933 6 6 3.3717 3.8542 -0.0002 7 6 3.1587 3.1899 -1.1936 8 6 2.5624 1.9429 -1.1935 9 6 2.2364 -1.1213 -0.7647 10 6 2.2365 -1.1208 0.7653 11 1 1.6112 -1.8579 1.2692 12 6 3.5293 -0.7807 1.4610 13 8 4.5773 -0.8339 0.8530 14 7 3.5209 -0.4174 2.7589 15 6 4.7778 -0.0873 3.4353 16 1 5.5698 -0.7056 3.0128 17 6 4.6365 -0.4304 4.9147 18 6 6.0155 -0.8113 5.3696 19 6 6.7179 0.3851 6.0574 20 6 6.3809 1.7012 5.3131 21 7 6.3781 1.6325 3.8804 22 6 7.5288 1.8514 3.1711 23 1 8.4851 1.5908 3.5997 24 6 7.4659 2.4084 1.9011 25 7 6.4041 3.0948 1.5354 26 14 8.8882 2.1835 0.7111 27 1 9.9540 1.3785 1.3602 28 1 8.4087 1.4812 -0.5062 29 1 9.4327 3.5125 0.3338 30 6 5.0929 1.3161 3.1710 31 1 -0.3633 0.0776 1.0248 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3633 -0.9262 -0.4452 34 1 2.0847 1.5728 2.1249 35 1 3.1549 3.7904 2.1256 36 1 3.8370 4.8289 -0.0002 37 1 3.4575 3.6456 -2.1260 38 1 2.3957 1.4240 -2.1260 39 1 3.1714 -0.8756 -1.2681 40 1 1.6112 -1.8587 -1.2680 41 1 2.6821 -0.3709 3.2440 42 1 4.2818 0.4372 5.4710 43 1 3.9517 -1.2687 5.0438 44 1 6.6037 -1.1250 4.5072 45 1 5.9439 -1.6390 6.0751 46 1 7.7965 0.2279 6.0429 47 1 6.3791 0.4575 7.0908 48 1 7.1052 2.4575 5.6155 49 1 5.3951 2.0330 5.6392 50 1 6.3603 3.4843 0.6481 51 1 5.2136 1.4727 2.0991 52 1 4.2934 1.9526 3.5501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034322834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:31 Heat of formation + Delta-G solvation = 24.453794 kcal Electronic energy + Delta-G solvation = -32572.263946 eV Core-core repulsion = 28730.359525 eV Total energy + Delta-G solvation = -3841.904421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.61359 -40.17011 -39.18983 -37.61190 -35.88413 -34.92998 -32.62937 -31.74644 -31.66787 -31.33150 -29.35802 -27.99670 -25.91007 -25.70743 -24.09301 -23.95824 -23.13132 -21.70289 -21.31613 -20.62466 -20.12435 -18.53816 -18.43447 -17.38267 -17.08468 -16.86652 -16.23535 -15.97443 -15.85259 -15.63196 -15.55107 -15.10614 -15.08815 -14.58606 -14.27584 -14.26517 -14.13946 -13.88280 -13.65477 -13.53316 -13.42970 -13.18730 -12.97172 -12.88856 -12.81052 -12.70108 -12.63868 -12.14392 -12.03495 -11.97186 -11.81931 -11.73951 -11.42315 -11.29876 -11.25456 -11.16426 -10.96642 -10.55574 -10.36920 -9.94106 -9.62296 -9.46666 -8.54785 -7.81048 -5.25523 0.58805 0.66292 1.34544 1.42491 1.46400 1.70053 2.25398 2.51636 2.79572 3.00809 3.31946 3.58752 3.74826 3.80547 3.86149 3.89191 4.09725 4.16741 4.19480 4.22491 4.24193 4.32571 4.36453 4.55580 4.55979 4.62339 4.67559 4.79124 4.81780 4.86288 4.88297 4.92710 5.01494 5.02120 5.05497 5.16671 5.25176 5.25575 5.27197 5.29566 5.39172 5.42118 5.42892 5.54415 5.60342 5.66366 5.69005 5.72322 5.74440 5.82848 5.96649 6.24983 6.49566 6.76851 7.19015 7.50325 7.94747 8.45305 9.19478 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.005626 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.817029 B = 4975.570092 C = 6370.328811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.053 4.053 3 C -0.066 4.066 4 C -0.109 4.109 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.134 4.134 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.178 4.178 11 H 0.165 0.835 12 C 0.535 3.465 13 O -0.591 6.591 14 N -0.711 5.711 15 C 0.140 3.860 16 H 0.035 0.965 17 C -0.108 4.108 18 C -0.104 4.104 19 C -0.135 4.135 20 C 0.150 3.850 21 N -0.593 5.593 22 C -0.269 4.269 23 H 0.048 0.952 24 C -0.024 4.024 25 N -0.880 5.880 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.307 1.307 29 H -0.286 1.286 30 C 0.162 3.838 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.410 0.590 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.084 0.916 48 H 0.020 0.980 49 H 0.039 0.961 50 H 0.245 0.755 51 H 0.074 0.926 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 -7.232 1.786 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.053 4.053 3 C -0.066 4.066 4 C -0.127 4.127 5 C -0.112 4.112 6 C -0.135 4.135 7 C -0.152 4.152 8 C -0.143 4.143 9 C -0.176 4.176 10 C -0.199 4.199 11 H 0.183 0.817 12 C 0.322 3.678 13 O -0.470 6.470 14 N -0.363 5.363 15 C 0.035 3.965 16 H 0.053 0.947 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.176 4.176 20 C 0.022 3.978 21 N -0.315 5.315 22 C -0.399 4.399 23 H 0.066 0.934 24 C -0.223 4.223 25 N -0.523 5.523 26 Si 0.761 3.239 27 H -0.199 1.199 28 H -0.235 1.235 29 H -0.212 1.212 30 C 0.037 3.963 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.247 0.753 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.038 0.962 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.092 0.908 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -16.643 -7.146 1.237 18.155 hybrid contribution 1.533 0.387 -0.703 1.730 sum -15.110 -6.760 0.533 16.562 Atomic orbital electron populations 1.21373 0.87638 1.03495 1.03434 1.20289 0.96134 0.86139 1.02765 1.19186 0.99404 0.94917 0.93140 1.20927 0.99527 0.94621 0.97586 1.20950 0.96769 0.95919 0.97552 1.21097 0.98905 1.00396 0.93093 1.21256 0.99799 0.95853 0.98268 1.21061 0.99650 0.95471 0.98140 1.23225 1.01965 1.00707 0.91715 1.22557 0.96392 1.04668 0.96240 0.81724 1.20259 0.90117 0.75320 0.82072 1.90728 1.35525 1.54561 1.66235 1.46177 1.10506 1.68517 1.11057 1.20662 0.84969 0.97964 0.92948 0.94702 1.21293 0.98037 1.02362 0.92891 1.21257 0.95420 0.97973 0.99513 1.22808 0.99223 0.96246 0.99313 1.20501 0.98420 0.94833 0.84002 1.43894 1.06221 1.80767 1.00644 1.19059 0.86694 1.34868 0.99301 0.93398 1.25393 0.98692 0.97637 1.00607 1.70085 1.29670 1.33799 1.18756 0.85776 0.81020 0.77103 0.79965 1.19909 1.23458 1.21247 1.20364 0.85417 0.90801 0.99698 0.90521 0.91788 0.89542 0.85966 0.87740 0.87024 0.85294 0.85230 0.91223 0.84209 0.75322 0.90227 0.88989 0.95256 0.90574 0.94288 0.89723 0.96161 0.94276 0.94581 0.90825 0.96638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.84 71.98 0.71 -0.80 16 2 C -0.05 -1.21 2.18 -52.93 -0.12 -1.33 16 3 C -0.07 -2.06 4.39 -19.87 -0.09 -2.14 16 4 C -0.11 -3.64 8.37 22.27 0.19 -3.45 16 5 C -0.09 -3.54 10.05 22.27 0.22 -3.31 16 6 C -0.12 -4.36 10.05 22.27 0.22 -4.14 16 7 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 8 C -0.13 -4.03 9.48 22.27 0.21 -3.82 16 9 C -0.14 -3.34 9.15 30.60 0.28 -3.06 16 10 C -0.18 -4.34 5.89 -11.54 -0.07 -4.40 16 11 H 0.17 2.61 8.14 -2.38 -0.02 2.59 16 12 C 0.53 19.09 5.64 87.66 0.49 19.58 16 13 O -0.59 -28.99 15.92 -3.01 -0.05 -29.03 16 14 N -0.71 -22.36 3.91 -453.30 -1.77 -24.14 16 15 C 0.14 5.43 2.00 42.75 0.09 5.52 16 16 H 0.03 1.70 6.23 -2.39 -0.01 1.69 16 17 C -0.11 -3.18 5.25 29.51 0.15 -3.02 16 18 C -0.10 -3.31 5.65 30.30 0.17 -3.14 16 19 C -0.14 -4.50 6.41 31.88 0.20 -4.30 16 20 C 0.15 6.20 5.17 87.60 0.45 6.66 16 21 N -0.59 -29.78 2.56 -707.84 -1.81 -31.60 16 22 C -0.27 -15.43 9.54 84.03 0.80 -14.63 16 23 H 0.05 2.80 7.91 -2.91 -0.02 2.78 16 24 C -0.02 -1.41 4.90 84.86 0.42 -0.99 16 25 N -0.88 -51.53 11.32 21.65 0.25 -51.28 16 26 Si 0.93 48.88 29.60 68.60 2.03 50.91 16 27 H -0.27 -14.01 7.11 99.48 0.71 -13.31 16 28 H -0.31 -16.92 7.11 99.48 0.71 -16.21 16 29 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 30 C 0.16 7.58 4.79 83.58 0.40 7.98 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.09 0.87 7.90 -2.39 -0.02 0.85 16 34 H 0.12 3.65 7.13 -2.91 -0.02 3.63 16 35 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.07 2.25 7.77 -2.39 -0.02 2.23 16 40 H 0.14 2.24 8.05 -2.39 -0.02 2.22 16 41 H 0.41 9.30 8.46 -92.70 -0.78 8.52 16 42 H 0.08 2.24 6.29 -2.39 -0.02 2.22 16 43 H 0.09 2.10 8.04 -2.38 -0.02 2.08 16 44 H 0.03 1.15 6.82 -2.39 -0.02 1.13 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 49 H 0.04 1.48 6.89 -2.39 -0.02 1.47 16 50 H 0.24 14.26 8.31 -92.70 -0.77 13.49 16 51 H 0.07 4.15 5.57 -2.39 -0.01 4.14 16 52 H 0.02 0.71 8.13 -2.39 -0.02 0.69 16 Total: -1.00 -75.92 405.93 3.73 -72.19 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.12 Total: 30.10 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.97 Total: -17.15 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.34 Total: -107.02 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -75.92 3.73 -72.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034322834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.639 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds