Wall clock time and date at job start Wed Apr 1 2020 01:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00317 * 2 1 4 4 C 1.38232 * 120.00068 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00005 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47030 * 89.99937 * 6 5 4 8 8 O 1.21286 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99938 * 179.97438 * 7 6 5 10 10 C 1.46939 * 120.54944 * 179.97438 * 9 7 6 11 11 C 1.53338 * 108.68132 * 125.67423 * 10 9 7 12 12 C 1.52111 * 109.44180 * 53.30476 * 11 10 9 13 13 C 1.54385 * 110.50977 * 64.08965 * 12 11 10 14 14 C 1.54461 * 102.87415 * 83.32987 * 13 12 11 15 15 N 1.47086 * 107.29333 * 21.50444 * 14 13 12 16 16 C 1.36929 * 125.62650 * 180.97034 * 15 14 13 17 17 H 1.08001 * 120.00345 * 185.86974 * 16 15 14 18 18 C 1.38816 * 120.00222 * 5.86122 * 16 15 14 19 19 N 1.31623 * 119.99709 * 7.33435 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 187.33153 * 18 16 15 21 21 H 1.48503 * 109.47224 * 265.01306 * 20 18 16 22 22 H 1.48501 * 109.47180 * 25.01705 * 20 18 16 23 23 H 1.48501 * 109.46791 * 145.01623 * 20 18 16 24 24 C 1.47573 * 108.74182 * 1.23336 * 15 14 13 25 25 C 1.52103 * 111.59848 * 300.68868 * 12 11 10 26 26 C 1.46921 * 120.55203 * 0.02585 * 9 7 6 27 27 C 1.38237 * 120.00001 * 0.24872 * 5 4 3 28 28 C 1.38237 * 119.99836 * 359.47904 * 27 5 4 29 29 H 1.09006 * 109.47419 * 89.99970 * 1 2 3 30 30 H 1.09001 * 109.47598 * 209.99764 * 1 2 3 31 31 H 1.08998 * 109.47232 * 330.00285 * 1 2 3 32 32 H 1.07999 * 119.99569 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99562 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.46886 * 330.00032 * 6 5 4 35 35 H 1.08998 * 109.46767 * 209.99739 * 6 5 4 36 36 H 1.09003 * 109.60110 * 5.91428 * 10 9 7 37 37 H 1.08997 * 109.73446 * 245.51206 * 10 9 7 38 38 H 1.08997 * 109.47928 * 293.31410 * 11 10 9 39 39 H 1.09004 * 109.48015 * 173.29647 * 11 10 9 40 40 H 1.09004 * 110.73525 * 324.98611 * 13 12 11 41 41 H 1.08998 * 110.73289 * 201.67461 * 13 12 11 42 42 H 1.09000 * 109.87788 * 262.08039 * 14 13 12 43 43 H 1.08993 * 109.88054 * 140.92773 * 14 13 12 44 44 H 0.96994 * 119.99782 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.37855 * 95.26113 * 24 15 14 46 46 H 1.09000 * 110.37261 * 217.60778 * 24 15 14 47 47 H 1.09002 * 109.47068 * 179.29405 * 25 12 11 48 48 H 1.08994 * 109.47682 * 299.31213 * 25 12 11 49 49 H 1.09003 * 109.60486 * 354.08247 * 26 9 7 50 50 H 1.09002 * 109.60646 * 114.55999 * 26 9 7 51 51 H 1.07995 * 119.99871 * 179.72334 * 27 5 4 52 52 H 1.07993 * 119.99926 * 180.27614 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2810 -0.0002 1.4214 8 8 5.4928 0.0004 2.3432 9 7 7.6061 -0.0007 1.6677 10 6 8.1091 -0.0001 3.0483 11 6 9.0726 -1.1806 3.2204 12 6 10.1412 -1.1237 2.1394 13 6 11.0057 0.1453 2.2997 14 6 12.0428 -0.2768 3.3636 15 7 12.1004 -1.7465 3.3591 16 6 12.8871 -2.5164 4.1735 17 1 12.9292 -3.5860 4.0297 18 6 13.6306 -1.9223 5.1840 19 7 13.4711 -0.6439 5.4537 20 14 14.8573 -2.9370 6.1612 21 1 14.2140 -3.4263 7.4070 22 1 15.3022 -4.0956 5.3458 23 1 16.0309 -2.0957 6.5076 24 6 11.1752 -2.2541 2.3276 25 6 9.5325 -1.1816 0.7467 26 6 8.5715 -0.0008 0.5602 27 6 3.5804 -1.1972 -0.0052 28 6 2.1981 -1.1972 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1420 0.8898 -0.5133 35 1 6.1419 -0.8902 -0.5133 36 1 7.2746 -0.1051 3.7416 37 1 8.6352 0.9334 3.2479 38 1 8.5198 -2.1162 3.1361 39 1 9.5446 -1.1244 4.2014 40 1 10.4032 0.9800 2.6580 41 1 11.4975 0.3983 1.3604 42 1 11.7319 0.0789 4.3459 43 1 13.0207 0.1331 3.1111 44 1 13.9904 -0.2288 6.1600 45 1 11.7103 -2.4412 1.3966 46 1 10.6837 -3.1636 2.6731 47 1 10.3255 -1.1260 0.0010 48 1 8.9862 -2.1173 0.6275 49 1 8.0419 -0.1062 -0.3867 50 1 9.1339 0.9330 0.5652 51 1 4.1204 -2.1325 -0.0097 52 1 1.6581 -2.1324 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035206256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:45 Heat of formation + Delta-G solvation = 6.135378 kcal Electronic energy + Delta-G solvation = -30000.592888 eV Core-core repulsion = 26157.894121 eV Total energy + Delta-G solvation = -3842.698768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.56385 -39.53035 -38.39642 -35.75865 -34.03113 -33.04804 -31.30656 -31.07579 -30.80437 -29.60434 -28.70694 -26.80944 -25.56128 -24.15002 -23.08590 -22.89348 -22.56594 -21.12089 -20.10433 -19.62154 -17.92327 -17.16769 -16.55824 -16.41539 -15.93704 -15.58433 -15.15794 -15.00768 -14.93904 -14.59491 -14.03716 -13.91988 -13.78364 -13.58182 -13.56393 -13.35761 -13.03913 -12.82040 -12.66515 -12.52128 -12.14557 -12.05240 -11.98489 -11.93128 -11.61910 -11.29379 -11.16077 -11.11545 -11.02064 -10.86053 -10.65646 -10.55215 -10.17708 -10.02689 -9.87489 -9.72447 -9.64948 -9.55138 -9.04823 -8.64288 -8.60046 -8.48337 -6.78927 -5.68226 -3.03819 1.14640 1.28121 2.65051 3.02485 3.40290 3.45991 3.47797 3.62422 4.44732 4.51039 4.58507 4.59373 4.72517 4.83685 4.86430 4.89845 4.97425 5.12688 5.21466 5.23894 5.26059 5.32044 5.32501 5.43942 5.44941 5.50880 5.54357 5.56235 5.58409 5.71812 5.89182 5.91337 5.91500 5.95871 6.01799 6.11871 6.15983 6.21591 6.24605 6.33704 6.42400 6.44199 6.48828 6.56087 6.62624 6.71692 6.84348 6.86141 6.97939 7.46210 7.51202 7.67868 7.84995 8.21512 8.29290 9.23411 9.84656 10.51328 11.40933 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.002019 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.293218 B =13861.702611 C =13997.258713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.068 4.068 6 C -0.102 4.102 7 C 0.514 3.486 8 O -0.538 6.538 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.109 4.109 12 C -0.071 4.071 13 C -0.136 4.136 14 C 0.173 3.827 15 N -0.603 5.603 16 C -0.226 4.226 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.146 3.854 25 C -0.117 4.117 26 C 0.108 3.892 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.251 0.749 45 H 0.018 0.982 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 3.727 -15.772 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.068 4.068 6 C -0.142 4.142 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.174 4.174 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.020 3.980 25 C -0.156 4.156 26 C -0.015 4.015 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.805 3.762 -15.080 25.969 hybrid contribution 0.992 -0.512 0.551 1.245 sum -19.813 3.250 -14.529 24.783 Atomic orbital electron populations 1.20780 0.91371 1.02746 1.02111 1.19904 0.95967 0.93289 0.99924 1.20955 0.94047 0.97456 1.01357 1.20947 0.94221 0.97343 0.99440 1.19288 0.93662 0.93595 1.00295 1.20715 0.93114 1.05020 0.95325 1.20469 0.81893 0.76367 0.91080 1.90711 1.54770 1.49711 1.46270 1.48167 1.05152 1.72890 1.07893 1.21733 0.97933 0.99279 0.82034 1.21605 0.95407 0.97156 1.00507 1.21066 0.94904 0.97945 0.93265 1.22909 0.98189 0.96095 1.00239 1.21224 0.94377 0.83805 0.95771 1.44496 1.47008 1.01849 1.39521 1.19035 1.18092 0.90503 1.07859 0.90649 1.24792 1.00807 0.96268 0.98673 1.69956 1.43412 1.10056 1.33263 0.86141 0.80928 0.78947 0.79999 1.21705 1.20729 1.21704 1.21531 0.89866 0.94300 0.92332 1.21748 0.98379 0.97717 0.97752 1.21833 0.91050 0.99724 0.88921 1.20965 0.94234 0.97393 0.99313 1.20965 0.94056 0.97477 1.01265 0.91326 0.91614 0.91632 0.86222 0.86292 0.88098 0.88007 0.89423 0.91191 0.92371 0.89358 0.92174 0.92709 0.92033 0.95738 0.93862 0.96458 0.94560 0.90621 0.91846 0.90184 0.90951 0.86239 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 5 C -0.07 -0.74 4.37 -104.62 -0.46 -1.19 16 6 C -0.10 -0.96 4.17 -29.03 -0.12 -1.08 16 7 C 0.51 6.82 7.69 -10.98 -0.08 6.73 16 8 O -0.54 -9.31 15.44 5.55 0.09 -9.23 16 9 N -0.61 -7.71 2.96 -172.55 -0.51 -8.22 16 10 C 0.11 1.64 6.12 -3.63 -0.02 1.62 16 11 C -0.11 -1.77 4.87 -27.01 -0.13 -1.90 16 12 C -0.07 -1.13 0.55 -153.99 -0.08 -1.22 16 13 C -0.14 -2.36 4.91 -25.24 -0.12 -2.48 16 14 C 0.17 4.06 5.07 -2.96 -0.01 4.05 16 15 N -0.60 -15.00 3.38 -170.17 -0.58 -15.57 16 16 C -0.23 -6.26 10.26 -15.06 -0.15 -6.42 16 17 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 18 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 19 N -0.92 -26.83 10.45 55.49 0.58 -26.25 16 20 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.15 2.91 6.16 -2.75 -0.02 2.89 16 25 C -0.12 -1.42 4.84 -26.99 -0.13 -1.55 16 26 C 0.11 1.10 6.07 -3.61 -0.02 1.08 16 27 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 28 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 35 H 0.10 0.77 7.64 -51.93 -0.40 0.37 16 36 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.07 1.01 6.55 -51.93 -0.34 0.67 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.71 7.82 -51.93 -0.41 1.31 16 40 H 0.06 0.97 6.18 -51.93 -0.32 0.65 16 41 H 0.05 0.88 7.98 -51.93 -0.41 0.47 16 42 H 0.06 1.62 6.88 -51.93 -0.36 1.27 16 43 H 0.02 0.64 7.97 -51.93 -0.41 0.23 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.35 7.99 -51.93 -0.42 -0.07 16 46 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 47 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.59 5.92 -51.93 -0.31 0.28 16 50 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -33.02 400.88 -11.38 -44.39 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.72 Total: -0.56 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.25 Total: -7.72 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.51 Total: -50.04 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.02 -11.38 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035206256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.529 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds