Wall clock time and date at job start Wed Apr 1 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00317 * 2 1 4 4 C 1.38232 * 120.00068 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00005 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47030 * 89.99937 * 6 5 4 8 8 O 1.21286 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99938 * 179.97438 * 7 6 5 10 10 C 1.46939 * 120.54944 * 179.97438 * 9 7 6 11 11 C 1.53338 * 108.68132 * 125.67423 * 10 9 7 12 12 C 1.52111 * 109.44180 * 53.30476 * 11 10 9 13 13 C 1.54385 * 110.50977 * 64.08965 * 12 11 10 14 14 C 1.54461 * 102.87415 * 83.32987 * 13 12 11 15 15 N 1.47086 * 107.29333 * 21.50444 * 14 13 12 16 16 C 1.36929 * 125.62650 * 180.97034 * 15 14 13 17 17 H 1.08001 * 120.00345 * 185.86974 * 16 15 14 18 18 C 1.38816 * 120.00222 * 5.86122 * 16 15 14 19 19 N 1.31623 * 119.99709 * 7.33435 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 187.33153 * 18 16 15 21 21 H 1.48503 * 109.47224 * 265.01306 * 20 18 16 22 22 H 1.48501 * 109.47180 * 25.01705 * 20 18 16 23 23 H 1.48501 * 109.46791 * 145.01623 * 20 18 16 24 24 C 1.47573 * 108.74182 * 1.23336 * 15 14 13 25 25 C 1.52103 * 111.59848 * 300.68868 * 12 11 10 26 26 C 1.46921 * 120.55203 * 0.02585 * 9 7 6 27 27 C 1.38237 * 120.00001 * 0.24872 * 5 4 3 28 28 C 1.38237 * 119.99836 * 359.47904 * 27 5 4 29 29 H 1.09006 * 109.47419 * 89.99970 * 1 2 3 30 30 H 1.09001 * 109.47598 * 209.99764 * 1 2 3 31 31 H 1.08998 * 109.47232 * 330.00285 * 1 2 3 32 32 H 1.07999 * 119.99569 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99562 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.46886 * 330.00032 * 6 5 4 35 35 H 1.08998 * 109.46767 * 209.99739 * 6 5 4 36 36 H 1.09003 * 109.60110 * 5.91428 * 10 9 7 37 37 H 1.08997 * 109.73446 * 245.51206 * 10 9 7 38 38 H 1.08997 * 109.47928 * 293.31410 * 11 10 9 39 39 H 1.09004 * 109.48015 * 173.29647 * 11 10 9 40 40 H 1.09004 * 110.73525 * 324.98611 * 13 12 11 41 41 H 1.08998 * 110.73289 * 201.67461 * 13 12 11 42 42 H 1.09000 * 109.87788 * 262.08039 * 14 13 12 43 43 H 1.08993 * 109.88054 * 140.92773 * 14 13 12 44 44 H 0.96994 * 119.99782 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.37855 * 95.26113 * 24 15 14 46 46 H 1.09000 * 110.37261 * 217.60778 * 24 15 14 47 47 H 1.09002 * 109.47068 * 179.29405 * 25 12 11 48 48 H 1.08994 * 109.47682 * 299.31213 * 25 12 11 49 49 H 1.09003 * 109.60486 * 354.08247 * 26 9 7 50 50 H 1.09002 * 109.60646 * 114.55999 * 26 9 7 51 51 H 1.07995 * 119.99871 * 179.72334 * 27 5 4 52 52 H 1.07993 * 119.99926 * 180.27614 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2810 -0.0002 1.4214 8 8 5.4928 0.0004 2.3432 9 7 7.6061 -0.0007 1.6677 10 6 8.1091 -0.0001 3.0483 11 6 9.0726 -1.1806 3.2204 12 6 10.1412 -1.1237 2.1394 13 6 11.0057 0.1453 2.2997 14 6 12.0428 -0.2768 3.3636 15 7 12.1004 -1.7465 3.3591 16 6 12.8871 -2.5164 4.1735 17 1 12.9292 -3.5860 4.0297 18 6 13.6306 -1.9223 5.1840 19 7 13.4711 -0.6439 5.4537 20 14 14.8573 -2.9370 6.1612 21 1 14.2140 -3.4263 7.4070 22 1 15.3022 -4.0956 5.3458 23 1 16.0309 -2.0957 6.5076 24 6 11.1752 -2.2541 2.3276 25 6 9.5325 -1.1816 0.7467 26 6 8.5715 -0.0008 0.5602 27 6 3.5804 -1.1972 -0.0052 28 6 2.1981 -1.1972 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1420 0.8898 -0.5133 35 1 6.1419 -0.8902 -0.5133 36 1 7.2746 -0.1051 3.7416 37 1 8.6352 0.9334 3.2479 38 1 8.5198 -2.1162 3.1361 39 1 9.5446 -1.1244 4.2014 40 1 10.4032 0.9800 2.6580 41 1 11.4975 0.3983 1.3604 42 1 11.7319 0.0789 4.3459 43 1 13.0207 0.1331 3.1111 44 1 13.9904 -0.2288 6.1600 45 1 11.7103 -2.4412 1.3966 46 1 10.6837 -3.1636 2.6731 47 1 10.3255 -1.1260 0.0010 48 1 8.9862 -2.1173 0.6275 49 1 8.0419 -0.1062 -0.3867 50 1 9.1339 0.9330 0.5652 51 1 4.1204 -2.1325 -0.0097 52 1 1.6581 -2.1324 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035206256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:43 Heat of formation + Delta-G solvation = -11.348855 kcal Electronic energy + Delta-G solvation = -30001.351061 eV Core-core repulsion = 26157.894121 eV Total energy + Delta-G solvation = -3843.456941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.62958 -40.45787 -39.53605 -37.16094 -34.86035 -34.64196 -32.55034 -32.28178 -31.76866 -30.57018 -30.25788 -28.24603 -26.46556 -25.83611 -24.18528 -23.81169 -23.59184 -22.02067 -21.82955 -20.66179 -19.32829 -18.53515 -17.94812 -17.26428 -16.80493 -16.72826 -16.44783 -16.33460 -15.92565 -15.85466 -15.61553 -14.92929 -14.85420 -14.64840 -14.43296 -14.27191 -14.15313 -14.00940 -13.91002 -13.61448 -13.38195 -13.23226 -13.00854 -13.00516 -12.76470 -12.68584 -12.65330 -12.31111 -12.20333 -12.02279 -11.94728 -11.89327 -11.79903 -11.77758 -11.46887 -11.19960 -11.10794 -10.75950 -10.70018 -9.76651 -9.56767 -9.34837 -8.83812 -7.81895 -5.19061 0.42980 0.56222 1.44090 1.45096 1.54526 1.68004 2.06668 2.49561 2.89092 3.33050 3.62763 3.66141 3.72778 3.79710 3.92903 3.94051 4.00318 4.11924 4.17642 4.18416 4.30218 4.32277 4.32773 4.55268 4.58145 4.64707 4.65632 4.67143 4.72876 4.77029 4.83059 4.83622 4.85231 4.89333 4.95209 4.98988 5.01872 5.13371 5.13804 5.21242 5.23768 5.32084 5.42565 5.44694 5.49488 5.54375 5.66596 5.70001 5.71631 5.74580 5.85944 6.17768 6.24296 6.50595 7.12248 7.23147 7.81298 8.45820 9.25423 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.002019 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.293218 B =13861.702611 C =13997.258713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.086 4.086 6 C -0.093 4.093 7 C 0.512 3.488 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.121 3.879 11 C -0.100 4.100 12 C -0.057 4.057 13 C -0.118 4.118 14 C 0.179 3.821 15 N -0.624 5.624 16 C -0.239 4.239 17 H 0.078 0.922 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.269 1.269 23 H -0.294 1.294 24 C 0.139 3.861 25 C -0.111 4.111 26 C 0.106 3.894 27 C -0.118 4.118 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.021 0.979 43 H -0.012 1.012 44 H 0.245 0.755 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.123 0.877 50 H 0.083 0.917 51 H 0.127 0.873 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.686 3.637 -18.849 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.132 4.132 7 C 0.302 3.698 8 O -0.467 6.467 9 N -0.338 5.338 10 C -0.001 4.001 11 C -0.138 4.138 12 C -0.058 4.058 13 C -0.156 4.156 14 C 0.054 3.946 15 N -0.350 5.350 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.261 4.261 19 N -0.597 5.597 20 Si 0.802 3.198 21 H -0.216 1.216 22 H -0.194 1.194 23 H -0.221 1.221 24 C 0.015 3.985 25 C -0.150 4.150 26 C -0.015 4.015 27 C -0.136 4.136 28 C -0.152 4.152 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.039 0.961 43 H 0.006 0.994 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.114 0.886 48 H 0.091 0.909 49 H 0.141 0.859 50 H 0.102 0.898 51 H 0.145 0.855 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.949 3.651 -18.213 28.755 hybrid contribution 1.304 -0.530 1.535 2.083 sum -20.645 3.121 -16.678 26.723 Atomic orbital electron populations 1.20818 0.89640 1.03311 1.03080 1.20272 0.97445 0.93168 0.99229 1.21263 0.94248 0.98360 1.01223 1.21223 0.94775 0.97874 0.99517 1.19523 0.94637 0.93716 1.00728 1.20769 0.92195 1.07620 0.92647 1.21189 0.81392 0.74943 0.92289 1.90696 1.55968 1.51857 1.48144 1.48226 1.05733 1.72444 1.07400 1.21426 0.96755 0.98288 0.83676 1.21448 0.95711 0.97982 0.98682 1.20994 0.93649 0.95200 0.95997 1.22765 0.96726 0.97060 0.99057 1.20993 0.94304 0.83293 0.95969 1.44795 1.47590 1.02491 1.40104 1.19415 1.18213 0.91061 1.08118 0.90435 1.25618 1.02917 0.97436 1.00155 1.70188 1.44234 1.11539 1.33748 0.85129 0.78391 0.77727 0.78508 1.21621 1.19376 1.22060 1.21772 0.90071 0.95448 0.91244 1.21731 0.99322 0.99259 0.94644 1.22097 0.90605 0.99245 0.89567 1.21219 0.94809 0.97895 0.99638 1.21256 0.94235 0.98395 1.01302 0.90066 0.91125 0.91014 0.84654 0.85219 0.85136 0.85410 0.91201 0.91042 0.92572 0.93540 0.90707 0.90243 0.96063 0.99373 0.94592 0.95055 0.95208 0.88557 0.90948 0.85942 0.89826 0.85515 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.23 0.71 -0.61 16 2 C -0.10 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 4 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 5 C -0.09 -1.68 4.37 -19.86 -0.09 -1.76 16 6 C -0.09 -1.41 4.17 29.10 0.12 -1.29 16 7 C 0.51 12.37 7.69 87.66 0.67 13.05 16 8 O -0.59 -20.00 15.44 -3.05 -0.05 -20.05 16 9 N -0.61 -13.69 2.96 -818.21 -2.42 -16.11 16 10 C 0.12 3.50 6.12 86.41 0.53 4.03 16 11 C -0.10 -3.27 4.87 30.41 0.15 -3.13 16 12 C -0.06 -1.74 0.55 -51.84 -0.03 -1.77 16 13 C -0.12 -3.94 4.91 31.56 0.16 -3.79 16 14 C 0.18 8.73 5.07 86.76 0.44 9.17 16 15 N -0.62 -31.79 3.38 -692.31 -2.34 -34.13 16 16 C -0.24 -13.54 10.26 84.04 0.86 -12.67 16 17 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 18 C -0.07 -3.95 5.45 84.86 0.46 -3.49 16 19 N -0.95 -57.82 10.45 21.65 0.23 -57.60 16 20 Si 0.97 46.60 29.56 68.60 2.03 48.63 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 C 0.14 5.46 6.16 86.63 0.53 5.99 16 25 C -0.11 -2.20 4.84 30.43 0.15 -2.05 16 26 C 0.11 1.64 6.07 86.43 0.53 2.17 16 27 C -0.12 -2.32 9.70 22.27 0.22 -2.11 16 28 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 29 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.13 1.21 7.87 -2.39 -0.02 1.19 16 35 H 0.13 1.28 7.64 -2.39 -0.02 1.27 16 36 H 0.07 2.28 6.99 -2.39 -0.02 2.26 16 37 H 0.07 2.03 6.55 -2.39 -0.02 2.02 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.90 7.82 -2.39 -0.02 1.88 16 40 H 0.07 2.30 6.18 -2.38 -0.01 2.28 16 41 H 0.08 2.30 7.98 -2.39 -0.02 2.29 16 42 H 0.02 1.19 6.88 -2.39 -0.02 1.17 16 43 H -0.01 -0.66 7.97 -2.39 -0.02 -0.67 16 44 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.03 1.17 7.99 -2.39 -0.02 1.15 16 46 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 47 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.12 0.96 5.92 -2.39 -0.01 0.95 16 50 H 0.08 1.20 7.62 -2.39 -0.02 1.18 16 51 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 52 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.97 400.88 4.28 -72.69 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.89 Total: 13.18 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.94 Total: -6.61 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.54 Total: -107.84 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.97 4.28 -72.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035206256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.342 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds