Wall clock time and date at job start Wed Apr 1 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38257 * 119.99884 * 2 1 4 4 C 1.38215 * 119.99984 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.38208 * 120.00173 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00463 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46913 * 90.00075 * 7 6 5 9 9 O 1.21279 * 120.00025 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46939 * 120.55029 * 179.97438 * 10 8 7 12 12 C 1.53338 * 108.68132 * 125.62962 * 11 10 8 13 13 C 1.52111 * 109.44180 * 53.30476 * 12 11 10 14 14 C 1.54385 * 110.50977 * 64.08965 * 13 12 11 15 15 C 1.54461 * 102.87415 * 83.32987 * 14 13 12 16 16 N 1.47086 * 107.29333 * 21.50444 * 15 14 13 17 17 C 1.36929 * 125.62650 * 180.97034 * 16 15 14 18 18 H 1.08001 * 120.00345 * 185.86974 * 17 16 15 19 19 C 1.38816 * 120.00222 * 5.86122 * 17 16 15 20 20 N 1.31623 * 119.99709 * 7.33435 * 19 17 16 21 21 Si 1.86798 * 120.00107 * 187.33153 * 19 17 16 22 22 H 1.48503 * 109.47224 * 265.01306 * 21 19 17 23 23 H 1.48501 * 109.47180 * 25.01705 * 21 19 17 24 24 H 1.48501 * 109.46791 * 145.01623 * 21 19 17 25 25 C 1.47573 * 108.74182 * 1.23336 * 16 15 14 26 26 C 1.52103 * 111.59848 * 300.68868 * 13 12 11 27 27 C 1.46921 * 120.55119 * 359.97438 * 10 8 7 28 28 C 1.38213 * 120.00139 * 180.27734 * 2 1 3 29 29 H 1.09003 * 109.47404 * 90.00269 * 1 2 3 30 30 H 1.09007 * 109.47265 * 210.00239 * 1 2 3 31 31 H 1.08998 * 109.47165 * 329.99958 * 1 2 3 32 32 H 1.07997 * 120.00089 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.00391 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.00189 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47154 * 330.00702 * 7 6 5 36 36 H 1.08996 * 109.47837 * 209.99811 * 7 6 5 37 37 H 1.09003 * 109.60110 * 5.86966 * 11 10 8 38 38 H 1.09000 * 109.59993 * 245.38931 * 11 10 8 39 39 H 1.08997 * 109.47928 * 293.31410 * 12 11 10 40 40 H 1.09004 * 109.48015 * 173.29647 * 12 11 10 41 41 H 1.09004 * 110.73525 * 324.98611 * 14 13 12 42 42 H 1.08998 * 110.73289 * 201.67461 * 14 13 12 43 43 H 1.09000 * 109.87788 * 262.08039 * 15 14 13 44 44 H 1.08993 * 109.88054 * 140.92773 * 15 14 13 45 45 H 0.96994 * 119.99782 * 179.97438 * 20 19 17 46 46 H 1.08995 * 110.37855 * 95.26113 * 25 16 15 47 47 H 1.09000 * 110.37261 * 217.60778 * 25 16 15 48 48 H 1.09002 * 109.47068 * 179.29405 * 26 13 12 49 49 H 1.08994 * 109.47682 * 299.31213 * 26 13 12 50 50 H 1.09003 * 109.60486 * 354.12709 * 27 10 8 51 51 H 1.09002 * 109.60646 * 114.60461 * 27 10 8 52 52 H 1.08000 * 120.00197 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3341 -2.5020 0.0000 8 6 4.5858 -2.9374 1.4206 9 8 4.1916 -2.2552 2.3427 10 7 5.2488 -4.0848 1.6665 11 6 5.5013 -4.5204 3.0469 12 6 4.9610 -5.9451 3.2189 13 6 5.5443 -6.8418 2.1375 14 6 7.0756 -6.9559 2.2972 15 6 7.2291 -8.0654 3.3608 16 7 5.9851 -8.8502 3.3565 17 6 5.7120 -9.9167 4.1708 18 1 4.8069 -10.4880 4.0271 19 6 6.5987 -10.2636 5.1809 20 7 7.6261 -9.4863 5.4504 21 14 6.3338 -11.8336 6.1578 22 1 5.5888 -11.5215 7.4039 23 1 5.5527 -12.7981 5.3424 24 1 7.6494 -12.4293 6.5036 25 6 5.0825 -8.3026 2.3254 26 6 5.1892 -6.3433 0.7450 27 6 5.7311 -4.9206 0.5586 28 6 2.1980 -1.1969 -0.0058 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1326 -0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3516 0.0000 0.0005 35 1 5.2863 -2.3716 -0.5141 36 1 3.7449 -3.2616 -0.5137 37 1 4.9933 -3.8504 3.7405 38 1 6.5734 -4.5097 3.2433 39 1 3.8743 -5.9343 3.1349 40 1 5.2459 -6.3260 4.1996 41 1 7.4972 -6.0167 2.6556 42 1 7.5403 -7.2550 1.3577 43 1 7.3820 -7.6185 4.3431 44 1 8.0730 -8.7071 3.1079 45 1 8.2455 -9.7285 6.1565 46 1 5.1878 -8.8593 1.3943 47 1 4.0492 -8.3319 2.6713 48 1 5.6337 -7.0021 -0.0011 49 1 4.1058 -6.3382 0.6261 50 1 5.3746 -4.5146 -0.3880 51 1 6.8209 -4.9408 0.5632 52 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035219034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:51 Heat of formation + Delta-G solvation = 6.150489 kcal Electronic energy + Delta-G solvation = -30108.792721 eV Core-core repulsion = 26266.094608 eV Total energy + Delta-G solvation = -3842.698112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.57119 -39.53408 -38.39001 -35.75788 -33.76407 -33.04502 -32.24433 -31.07603 -30.72375 -28.75353 -28.12881 -27.05622 -26.46543 -24.17327 -23.28099 -22.68140 -22.21816 -21.10324 -20.09993 -19.50446 -17.91925 -17.16487 -16.70515 -16.51090 -15.92109 -15.82105 -15.06446 -15.00540 -14.78885 -14.59348 -14.04049 -13.90921 -13.80781 -13.55859 -13.45383 -13.23666 -13.15188 -12.79773 -12.68899 -12.50097 -12.14678 -12.06682 -12.02125 -11.93501 -11.62531 -11.24509 -11.17778 -11.14397 -11.01681 -10.86164 -10.65851 -10.55383 -10.17872 -10.02847 -9.88425 -9.73064 -9.65128 -9.55838 -8.92374 -8.73359 -8.60180 -8.48535 -6.79121 -5.68356 -3.03980 1.17377 1.25467 2.64675 3.02408 3.40218 3.45911 3.47722 3.62582 4.42012 4.50851 4.57027 4.59030 4.70675 4.85186 4.93290 4.94844 5.04685 5.09830 5.12833 5.25562 5.26435 5.31443 5.36105 5.43687 5.44708 5.48741 5.52296 5.57789 5.60481 5.71669 5.88677 5.89151 5.95291 5.95944 6.01571 6.11674 6.15974 6.21542 6.29726 6.33538 6.39411 6.44744 6.48585 6.55931 6.62448 6.71475 6.84192 6.86169 6.97759 7.45844 7.51048 7.67710 7.84845 8.21105 8.29154 9.23270 9.84512 10.51169 11.40819 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.002113 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.111610 B =13251.034687 C =13499.997511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.103 4.103 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.607 5.607 11 C 0.112 3.888 12 C -0.109 4.109 13 C -0.070 4.070 14 C -0.136 4.136 15 C 0.173 3.827 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.117 4.117 27 C 0.108 3.892 28 C -0.105 4.105 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.024 0.976 45 H 0.251 0.749 46 H 0.018 0.982 47 H 0.036 0.964 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 18.856 -15.756 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.142 4.142 8 C 0.302 3.698 9 O -0.414 6.414 10 N -0.341 5.341 11 C -0.010 4.010 12 C -0.147 4.147 13 C -0.071 4.071 14 C -0.174 4.174 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.019 3.981 26 C -0.156 4.156 27 C -0.015 4.015 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.091 0.909 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.613 19.093 -15.064 25.484 hybrid contribution 0.091 -1.049 0.549 1.188 sum -7.522 18.043 -14.515 24.348 Atomic orbital electron populations 1.20785 0.91266 1.02863 1.02151 1.19863 0.96009 0.93108 0.99702 1.20996 0.94289 0.97374 1.01502 1.21061 0.94293 0.97821 1.00207 1.20947 0.99645 0.92007 1.00340 1.19286 0.93518 0.93668 0.99433 1.20722 1.02054 0.96075 0.95388 1.20450 0.77668 0.80621 0.91046 1.90710 1.50875 1.53617 1.46227 1.48172 1.56124 1.21911 1.07906 1.21744 1.00949 0.96242 0.82031 1.21606 0.99688 0.92884 1.00509 1.21063 0.96597 0.96234 0.93256 1.22910 0.94132 1.00158 1.00241 1.21223 0.88367 0.89805 0.95772 1.44500 1.13754 1.35087 1.39560 1.19034 1.05200 1.03370 1.07879 0.90651 1.24793 0.97982 0.99088 0.98674 1.69956 1.16380 1.37076 1.33283 0.86141 0.76898 0.82975 0.80002 1.21693 1.20725 1.21708 1.21534 0.94145 0.90032 0.92341 1.21747 1.01058 0.95038 0.97761 1.21832 0.99579 0.91211 0.88910 1.20856 0.93376 0.97632 1.00463 0.91272 0.91495 0.91607 0.86327 0.86156 0.86347 0.88047 0.87989 0.89402 0.91182 0.92371 0.89356 0.92169 0.92705 0.92037 0.95737 0.93859 0.96451 0.94552 0.90615 0.91849 0.90189 0.90941 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.09 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.11 -1.16 9.70 -39.59 -0.38 -1.54 16 6 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 7 C -0.10 -0.97 4.17 -29.03 -0.12 -1.09 16 8 C 0.51 6.82 7.69 -10.98 -0.08 6.74 16 9 O -0.54 -9.30 15.44 5.56 0.09 -9.22 16 10 N -0.61 -7.70 2.96 -172.56 -0.51 -8.21 16 11 C 0.11 1.64 6.12 -3.63 -0.02 1.62 16 12 C -0.11 -1.77 4.87 -27.01 -0.13 -1.90 16 13 C -0.07 -1.12 0.55 -153.99 -0.08 -1.21 16 14 C -0.14 -2.36 4.91 -25.24 -0.12 -2.48 16 15 C 0.17 4.06 5.07 -2.96 -0.01 4.05 16 16 N -0.60 -15.01 3.38 -170.17 -0.58 -15.59 16 17 C -0.23 -6.26 10.26 -15.06 -0.15 -6.41 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 19 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 20 N -0.92 -26.84 10.45 55.49 0.58 -26.26 16 21 Si 0.91 22.13 29.56 -169.99 -5.02 17.10 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.15 2.90 6.16 -2.75 -0.02 2.88 16 26 C -0.12 -1.42 4.84 -26.99 -0.13 -1.55 16 27 C 0.11 1.10 6.07 -3.62 -0.02 1.07 16 28 C -0.11 -1.13 9.36 -39.58 -0.37 -1.50 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.10 0.73 7.87 -51.93 -0.41 0.33 16 36 H 0.10 0.78 7.64 -51.93 -0.40 0.38 16 37 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 38 H 0.07 1.01 6.55 -51.93 -0.34 0.67 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.71 7.82 -51.93 -0.41 1.31 16 41 H 0.06 0.97 6.17 -51.93 -0.32 0.65 16 42 H 0.05 0.88 7.98 -51.93 -0.41 0.47 16 43 H 0.06 1.62 6.88 -51.93 -0.36 1.27 16 44 H 0.02 0.64 7.97 -51.93 -0.41 0.23 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.35 7.99 -51.93 -0.42 -0.07 16 47 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 48 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.59 5.91 -51.93 -0.31 0.28 16 51 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 52 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -33.02 400.87 -11.38 -44.39 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.72 Total: -0.46 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.25 Total: -7.81 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.51 Total: -50.05 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.02 -11.38 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035219034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.544 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds