Wall clock time and date at job start Wed Apr 1 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38257 * 119.99884 * 2 1 4 4 C 1.38215 * 119.99984 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.38208 * 120.00173 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00463 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46913 * 90.00075 * 7 6 5 9 9 O 1.21279 * 120.00025 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46939 * 120.55029 * 179.97438 * 10 8 7 12 12 C 1.53338 * 108.68132 * 125.62962 * 11 10 8 13 13 C 1.52111 * 109.44180 * 53.30476 * 12 11 10 14 14 C 1.54385 * 110.50977 * 64.08965 * 13 12 11 15 15 C 1.54461 * 102.87415 * 83.32987 * 14 13 12 16 16 N 1.47086 * 107.29333 * 21.50444 * 15 14 13 17 17 C 1.36929 * 125.62650 * 180.97034 * 16 15 14 18 18 H 1.08001 * 120.00345 * 185.86974 * 17 16 15 19 19 C 1.38816 * 120.00222 * 5.86122 * 17 16 15 20 20 N 1.31623 * 119.99709 * 7.33435 * 19 17 16 21 21 Si 1.86798 * 120.00107 * 187.33153 * 19 17 16 22 22 H 1.48503 * 109.47224 * 265.01306 * 21 19 17 23 23 H 1.48501 * 109.47180 * 25.01705 * 21 19 17 24 24 H 1.48501 * 109.46791 * 145.01623 * 21 19 17 25 25 C 1.47573 * 108.74182 * 1.23336 * 16 15 14 26 26 C 1.52103 * 111.59848 * 300.68868 * 13 12 11 27 27 C 1.46921 * 120.55119 * 359.97438 * 10 8 7 28 28 C 1.38213 * 120.00139 * 180.27734 * 2 1 3 29 29 H 1.09003 * 109.47404 * 90.00269 * 1 2 3 30 30 H 1.09007 * 109.47265 * 210.00239 * 1 2 3 31 31 H 1.08998 * 109.47165 * 329.99958 * 1 2 3 32 32 H 1.07997 * 120.00089 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.00391 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.00189 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47154 * 330.00702 * 7 6 5 36 36 H 1.08996 * 109.47837 * 209.99811 * 7 6 5 37 37 H 1.09003 * 109.60110 * 5.86966 * 11 10 8 38 38 H 1.09000 * 109.59993 * 245.38931 * 11 10 8 39 39 H 1.08997 * 109.47928 * 293.31410 * 12 11 10 40 40 H 1.09004 * 109.48015 * 173.29647 * 12 11 10 41 41 H 1.09004 * 110.73525 * 324.98611 * 14 13 12 42 42 H 1.08998 * 110.73289 * 201.67461 * 14 13 12 43 43 H 1.09000 * 109.87788 * 262.08039 * 15 14 13 44 44 H 1.08993 * 109.88054 * 140.92773 * 15 14 13 45 45 H 0.96994 * 119.99782 * 179.97438 * 20 19 17 46 46 H 1.08995 * 110.37855 * 95.26113 * 25 16 15 47 47 H 1.09000 * 110.37261 * 217.60778 * 25 16 15 48 48 H 1.09002 * 109.47068 * 179.29405 * 26 13 12 49 49 H 1.08994 * 109.47682 * 299.31213 * 26 13 12 50 50 H 1.09003 * 109.60486 * 354.12709 * 27 10 8 51 51 H 1.09002 * 109.60646 * 114.60461 * 27 10 8 52 52 H 1.08000 * 120.00197 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3341 -2.5020 0.0000 8 6 4.5858 -2.9374 1.4206 9 8 4.1916 -2.2552 2.3427 10 7 5.2488 -4.0848 1.6665 11 6 5.5013 -4.5204 3.0469 12 6 4.9610 -5.9451 3.2189 13 6 5.5443 -6.8418 2.1375 14 6 7.0756 -6.9559 2.2972 15 6 7.2291 -8.0654 3.3608 16 7 5.9851 -8.8502 3.3565 17 6 5.7120 -9.9167 4.1708 18 1 4.8069 -10.4880 4.0271 19 6 6.5987 -10.2636 5.1809 20 7 7.6261 -9.4863 5.4504 21 14 6.3338 -11.8336 6.1578 22 1 5.5888 -11.5215 7.4039 23 1 5.5527 -12.7981 5.3424 24 1 7.6494 -12.4293 6.5036 25 6 5.0825 -8.3026 2.3254 26 6 5.1892 -6.3433 0.7450 27 6 5.7311 -4.9206 0.5586 28 6 2.1980 -1.1969 -0.0058 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1326 -0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3516 0.0000 0.0005 35 1 5.2863 -2.3716 -0.5141 36 1 3.7449 -3.2616 -0.5137 37 1 4.9933 -3.8504 3.7405 38 1 6.5734 -4.5097 3.2433 39 1 3.8743 -5.9343 3.1349 40 1 5.2459 -6.3260 4.1996 41 1 7.4972 -6.0167 2.6556 42 1 7.5403 -7.2550 1.3577 43 1 7.3820 -7.6185 4.3431 44 1 8.0730 -8.7071 3.1079 45 1 8.2455 -9.7285 6.1565 46 1 5.1878 -8.8593 1.3943 47 1 4.0492 -8.3319 2.6713 48 1 5.6337 -7.0021 -0.0011 49 1 4.1058 -6.3382 0.6261 50 1 5.3746 -4.5146 -0.3880 51 1 6.8209 -4.9408 0.5632 52 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035219034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:49 Heat of formation + Delta-G solvation = -11.340535 kcal Electronic energy + Delta-G solvation = -30109.551188 eV Core-core repulsion = 26266.094608 eV Total energy + Delta-G solvation = -3843.456580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.63600 -40.46639 -39.53140 -37.16178 -34.81440 -34.42677 -33.01115 -32.41671 -32.10637 -30.44251 -29.05547 -28.00745 -27.59037 -25.92989 -24.40622 -23.86738 -22.99824 -22.04396 -21.82532 -20.52723 -19.31502 -18.53798 -17.93539 -17.42168 -16.82051 -16.74954 -16.72123 -16.34776 -15.91178 -15.73813 -15.49080 -14.94037 -14.87389 -14.66238 -14.43224 -14.18691 -14.09621 -13.94628 -13.89583 -13.73451 -13.38922 -13.20744 -13.01617 -13.00587 -12.77456 -12.72741 -12.69978 -12.31166 -12.20173 -12.02436 -11.92958 -11.87695 -11.80926 -11.80062 -11.47057 -11.20161 -11.11043 -10.77589 -10.70108 -9.64993 -9.57010 -9.43879 -8.84051 -7.82002 -5.19243 0.45219 0.53991 1.44097 1.45120 1.54543 1.67464 2.06494 2.49523 2.89341 3.32978 3.62552 3.65080 3.71971 3.77451 3.92664 3.93525 3.99660 4.08642 4.17508 4.27507 4.29980 4.32447 4.40921 4.49879 4.55104 4.61869 4.64204 4.67974 4.72778 4.76481 4.81541 4.83294 4.84083 4.86389 4.95990 4.98817 5.01500 5.13138 5.13618 5.20735 5.22915 5.33118 5.42377 5.44581 5.49398 5.59944 5.66253 5.69050 5.69918 5.74108 5.85769 6.17812 6.24178 6.50091 7.12121 7.22592 7.81145 8.45650 9.25351 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.002113 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.111610 B =13251.034687 C =13499.997511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.094 4.094 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.122 3.878 12 C -0.100 4.100 13 C -0.057 4.057 14 C -0.118 4.118 15 C 0.180 3.820 16 N -0.624 5.624 17 C -0.238 4.238 18 H 0.078 0.922 19 C -0.068 4.068 20 N -0.948 5.948 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.269 1.269 24 H -0.294 1.294 25 C 0.139 3.861 26 C -0.111 4.111 27 C 0.106 3.894 28 C -0.125 4.125 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.021 0.979 44 H -0.012 1.012 45 H 0.245 0.755 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.122 0.878 51 H 0.084 0.916 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 19.763 -18.843 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.152 4.152 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.075 4.075 7 C -0.133 4.133 8 C 0.302 3.698 9 O -0.466 6.466 10 N -0.338 5.338 11 C -0.001 4.001 12 C -0.138 4.138 13 C -0.058 4.058 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.350 5.350 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.597 5.597 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.194 1.194 24 H -0.221 1.221 25 C 0.014 3.986 26 C -0.150 4.150 27 C -0.015 4.015 28 C -0.143 4.143 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.006 0.994 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.140 0.860 51 H 0.102 0.898 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.322 19.992 -18.207 28.291 hybrid contribution 0.247 -1.316 1.535 2.037 sum -8.075 18.676 -16.671 26.304 Atomic orbital electron populations 1.20816 0.89840 1.03158 1.03095 1.20221 0.97324 0.93185 0.99324 1.21310 0.94590 0.98123 1.01196 1.21386 0.94676 0.98559 0.99694 1.21223 1.00422 0.92327 1.00637 1.19530 0.93789 0.94512 0.99673 1.20780 1.03830 0.95985 0.92739 1.21159 0.76432 0.79949 0.92238 1.90695 1.52751 1.55080 1.48095 1.48229 1.55920 1.22235 1.07422 1.21437 1.00555 0.94475 0.83662 1.21450 0.99576 0.94128 0.98685 1.20987 0.95113 0.93704 0.95978 1.22766 0.95530 0.98263 0.99061 1.20991 0.86979 0.90605 0.95965 1.44804 1.15244 1.34838 1.40150 1.19412 1.05063 1.04179 1.08134 0.90436 1.25619 0.98148 1.02198 1.00155 1.70188 1.17216 1.38555 1.33774 0.85128 0.76538 0.79570 0.78519 1.21592 1.19362 1.22079 1.21778 0.93019 0.92526 0.91257 1.21730 1.02032 0.96542 0.94664 1.22096 1.00338 0.89539 0.89549 1.21093 0.93811 0.98236 1.01140 0.89935 0.91704 0.90809 0.84511 0.84341 0.85278 0.85067 0.85439 0.91174 0.91024 0.92571 0.93541 0.90699 0.90235 0.96076 0.99377 0.94587 0.95037 0.95186 0.88541 0.90955 0.85962 0.89806 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.23 0.71 -0.79 16 2 C -0.10 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 4 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 5 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 6 C -0.07 -1.47 4.37 -19.87 -0.09 -1.56 16 7 C -0.09 -1.44 4.17 29.10 0.12 -1.31 16 8 C 0.51 12.40 7.69 87.66 0.67 13.08 16 9 O -0.59 -20.00 15.44 -3.03 -0.05 -20.05 16 10 N -0.61 -13.70 2.96 -818.23 -2.42 -16.12 16 11 C 0.12 3.50 6.12 86.41 0.53 4.03 16 12 C -0.10 -3.28 4.87 30.41 0.15 -3.13 16 13 C -0.06 -1.72 0.55 -51.84 -0.03 -1.75 16 14 C -0.12 -3.95 4.91 31.56 0.16 -3.79 16 15 C 0.18 8.74 5.07 86.76 0.44 9.18 16 16 N -0.62 -31.84 3.38 -692.31 -2.34 -34.18 16 17 C -0.24 -13.52 10.26 84.04 0.86 -12.66 16 18 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 19 C -0.07 -3.95 5.45 84.86 0.46 -3.48 16 20 N -0.95 -57.85 10.45 21.65 0.23 -57.63 16 21 Si 0.97 46.58 29.56 68.60 2.03 48.61 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 C 0.14 5.44 6.16 86.63 0.53 5.98 16 26 C -0.11 -2.20 4.84 30.42 0.15 -2.06 16 27 C 0.11 1.64 6.07 86.42 0.52 2.17 16 28 C -0.12 -2.50 9.36 22.27 0.21 -2.30 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.13 1.23 7.87 -2.39 -0.02 1.21 16 36 H 0.13 1.31 7.64 -2.39 -0.02 1.29 16 37 H 0.07 2.28 6.99 -2.39 -0.02 2.27 16 38 H 0.07 2.03 6.55 -2.39 -0.02 2.02 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.90 7.82 -2.39 -0.02 1.88 16 41 H 0.07 2.30 6.17 -2.38 -0.01 2.28 16 42 H 0.08 2.31 7.98 -2.39 -0.02 2.29 16 43 H 0.02 1.18 6.88 -2.39 -0.02 1.17 16 44 H -0.01 -0.66 7.97 -2.39 -0.02 -0.68 16 45 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.03 1.17 7.99 -2.39 -0.02 1.15 16 47 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 48 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.12 0.97 5.91 -2.39 -0.01 0.95 16 51 H 0.08 1.20 7.62 -2.39 -0.02 1.18 16 52 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -77.00 400.87 4.28 -72.72 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.89 Total: 13.38 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.94 Total: -6.74 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.54 Total: -107.93 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.00 4.28 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035219034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.382 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds