Wall clock time and date at job start Wed Apr 1 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 119.99843 * 2 1 4 4 C 1.38212 * 119.99748 * 180.23363 * 3 2 1 5 5 C 1.38259 * 120.00166 * 359.80464 * 4 3 2 6 6 C 1.38207 * 119.99668 * 359.97438 * 5 4 3 7 7 C 1.38209 * 120.00262 * 179.78520 * 2 1 3 8 8 C 1.50710 * 119.99951 * 359.97438 * 7 2 1 9 9 C 1.50703 * 109.46897 * 84.72388 * 8 7 2 10 10 O 1.21275 * 120.00111 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99612 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8 29 29 H 1.09006 * 109.47106 * 270.21070 * 1 2 3 30 30 H 1.08997 * 109.47625 * 30.21094 * 1 2 3 31 31 H 1.08996 * 109.47208 * 150.21574 * 1 2 3 32 32 H 1.07999 * 120.00130 * 0.05980 * 3 2 1 33 33 H 1.08005 * 119.99908 * 179.83124 * 4 3 2 34 34 H 1.08004 * 120.00168 * 180.02562 * 5 4 3 35 35 H 1.08004 * 119.99769 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.46609 * 324.72484 * 8 7 2 37 37 H 1.08995 * 109.46867 * 204.72588 * 8 7 2 38 38 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 39 39 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 40 40 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 41 41 H 1.08999 * 109.48299 * 173.29949 * 13 12 11 42 42 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 43 43 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 44 44 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 45 45 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 46 46 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 47 47 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 48 48 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 49 49 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 50 50 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 51 51 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 52 52 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0049 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0011 7 6 2.1981 -1.1969 0.0045 8 6 1.4446 -2.5021 0.0100 9 6 1.0797 -2.8774 -1.4033 10 8 1.4004 -2.1564 -2.3242 11 7 0.3971 -4.0144 -1.6436 12 6 0.0346 -4.3918 -3.0166 13 6 0.5568 -5.8071 -3.2911 14 6 0.0599 -6.7496 -2.2055 15 6 -1.4795 -6.8590 -2.2473 16 6 -1.7192 -7.9229 -3.3411 17 7 -0.4804 -8.7053 -3.4692 18 6 -0.2751 -9.7361 -4.3469 19 1 0.7192 -10.1320 -4.4918 20 6 -1.3450 -10.2722 -5.0503 21 7 -1.1259 -11.0541 -6.0862 22 14 -3.0956 -9.8840 -4.5268 23 1 -4.0454 -10.6731 -5.3517 24 1 -3.2734 -10.2351 -3.0950 25 1 -3.3595 -8.4352 -4.7177 26 6 0.5026 -8.2004 -2.4911 27 6 0.5257 -6.3098 -0.8259 28 6 0.0030 -4.8970 -0.5371 29 1 -0.3634 0.0038 1.0277 30 1 -0.3634 0.8880 -0.5171 31 1 -0.3633 -0.8919 -0.5105 32 1 1.6582 2.1326 0.0010 33 1 4.1203 2.1327 -0.0076 34 1 5.3517 0.0000 -0.0091 35 1 4.1206 -2.1322 -0.0013 36 1 0.5366 -2.3948 0.6034 37 1 2.0715 -3.2817 0.4427 38 1 0.4870 -3.6924 -3.7196 39 1 -1.0497 -4.3744 -3.1264 40 1 1.6468 -5.7982 -3.2936 41 1 0.1940 -6.1467 -4.2612 42 1 -1.9266 -5.9063 -2.5311 43 1 -1.8685 -7.1984 -1.2873 44 1 -1.9490 -7.4351 -4.2885 45 1 -2.5416 -8.5760 -3.0492 46 1 -0.2204 -11.1969 -6.4033 47 1 0.4707 -8.7961 -1.5788 48 1 1.5050 -8.2135 -2.9191 49 1 0.1408 -7.0000 -0.0753 50 1 1.6152 -6.3080 -0.7936 51 1 0.4345 -4.5308 0.3943 52 1 -1.0837 -4.9186 -0.4558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035253436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:54 Heat of formation + Delta-G solvation = -3.297692 kcal Electronic energy + Delta-G solvation = -30565.667555 eV Core-core repulsion = 26722.559739 eV Total energy + Delta-G solvation = -3843.107816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.75355 -40.65261 -39.56234 -37.33226 -34.96098 -34.30707 -33.25177 -32.91409 -32.14999 -30.64743 -29.28547 -28.34052 -27.41821 -25.41154 -24.47103 -24.10918 -23.01058 -22.36133 -21.88961 -20.67015 -19.80381 -18.83373 -18.11246 -17.38828 -17.07206 -16.88726 -16.74531 -16.66833 -15.93174 -15.65148 -15.51883 -15.12790 -15.00789 -14.95175 -14.60370 -14.32342 -14.25856 -14.04360 -13.93301 -13.75741 -13.54986 -13.21941 -13.12307 -13.03321 -12.91031 -12.85920 -12.80598 -12.56787 -12.18147 -11.91464 -11.81692 -11.78607 -11.65645 -11.56682 -11.43192 -11.29637 -10.96549 -10.81759 -10.61756 -9.66916 -9.59096 -9.43355 -9.05785 -8.65720 -5.46938 0.44407 0.53012 1.39485 1.49390 1.66081 1.72029 2.05165 2.55313 2.88510 3.12061 3.33161 3.54628 3.62671 3.70903 3.78139 3.90657 3.92998 4.07971 4.10835 4.19162 4.20540 4.26863 4.31914 4.36965 4.45794 4.47245 4.56643 4.61558 4.65426 4.71929 4.72652 4.75394 4.79851 4.82539 4.85815 4.90136 4.92300 4.96721 5.05980 5.08965 5.10173 5.20430 5.25538 5.32332 5.40488 5.43905 5.53854 5.59614 5.63220 5.64960 5.74939 6.10416 6.16853 6.47479 6.83230 7.21947 7.46414 8.11086 8.87093 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.002326 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.765152 B =12036.614327 C =12286.334870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.096 4.096 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.607 5.607 12 C 0.121 3.879 13 C -0.105 4.105 14 C -0.058 4.058 15 C -0.109 4.109 16 C 0.100 3.900 17 N -0.633 5.633 18 C -0.307 4.307 19 H 0.040 0.960 20 C -0.085 4.085 21 N -0.968 5.968 22 Si 1.114 2.886 23 H -0.316 1.316 24 H -0.281 1.281 25 H -0.252 1.252 26 C 0.140 3.860 27 C -0.112 4.112 28 C 0.106 3.894 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.245 0.755 47 H 0.035 0.965 48 H 0.023 0.977 49 H 0.100 0.900 50 H 0.067 0.933 51 H 0.119 0.881 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 25.339 21.978 33.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.084 4.084 8 C -0.135 4.135 9 C 0.304 3.696 10 O -0.462 6.462 11 N -0.340 5.340 12 C -0.002 4.002 13 C -0.143 4.143 14 C -0.059 4.059 15 C -0.146 4.146 16 C -0.024 4.024 17 N -0.360 5.360 18 C -0.436 4.436 19 H 0.058 0.942 20 C -0.277 4.277 21 N -0.612 5.612 22 Si 0.942 3.058 23 H -0.246 1.246 24 H -0.209 1.209 25 H -0.177 1.177 26 C 0.015 3.985 27 C -0.151 4.151 28 C -0.016 4.016 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.118 0.882 50 H 0.086 0.914 51 H 0.137 0.863 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.121 25.327 21.133 33.054 hybrid contribution 2.316 -0.678 -0.894 2.574 sum 4.437 24.649 20.239 32.200 Atomic orbital electron populations 1.20832 0.90312 1.02725 1.03142 1.20028 0.96974 0.92875 0.98691 1.21285 0.94753 0.97974 1.01306 1.21424 0.94545 0.98813 0.99696 1.21368 1.00792 0.92573 1.00985 1.21252 0.93839 0.98968 0.99854 1.19410 0.93753 0.94019 1.01175 1.20787 1.03336 0.96201 0.93209 1.21062 0.76547 0.80078 0.91927 1.90703 1.55327 1.52447 1.47748 1.48229 1.55510 1.22185 1.08026 1.21480 1.00335 0.94645 0.83743 1.21510 0.99955 0.94345 0.98509 1.21018 0.95490 0.93074 0.96297 1.22681 0.95252 0.98162 0.98553 1.22150 0.88886 0.93235 0.98142 1.44944 1.12811 1.37065 1.41214 1.20043 0.94459 1.11536 1.17533 0.94217 1.27211 1.07495 0.97096 0.95905 1.70999 1.22184 1.42569 1.25487 0.83327 0.71437 0.76686 0.74322 1.24574 1.20870 1.17710 1.21781 0.91928 0.93346 0.91456 1.21740 1.01551 0.97194 0.94600 1.22119 1.01856 0.88307 0.89296 0.89039 0.91339 0.92458 0.84688 0.84351 0.84662 0.85423 0.85223 0.85713 0.91150 0.90025 0.93002 0.93023 0.88739 0.88560 0.95556 0.96027 0.94607 0.94753 0.95858 0.88208 0.91386 0.86251 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.22 71.24 0.66 -0.93 16 2 C -0.09 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.14 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 5 C -0.14 -2.40 10.05 22.27 0.22 -2.18 16 6 C -0.12 -2.25 9.68 22.27 0.22 -2.04 16 7 C -0.08 -1.54 4.37 -19.87 -0.09 -1.63 16 8 C -0.10 -1.33 3.49 29.11 0.10 -1.23 16 9 C 0.51 11.13 6.89 87.66 0.60 11.73 16 10 O -0.58 -18.36 15.44 -3.02 -0.05 -18.40 16 11 N -0.61 -11.62 2.96 -818.25 -2.42 -14.04 16 12 C 0.12 2.93 6.12 86.41 0.53 3.46 16 13 C -0.10 -3.02 4.87 30.42 0.15 -2.87 16 14 C -0.06 -1.53 0.55 -51.84 -0.03 -1.56 16 15 C -0.11 -2.88 4.91 31.56 0.16 -2.72 16 16 C 0.10 4.00 4.24 86.76 0.37 4.37 16 17 N -0.63 -30.25 3.31 -692.29 -2.29 -32.55 16 18 C -0.31 -18.16 10.56 84.03 0.89 -17.28 16 19 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 20 C -0.09 -5.19 5.50 84.86 0.47 -4.73 16 21 N -0.97 -63.97 13.70 21.65 0.30 -63.68 16 22 Si 1.11 54.51 24.53 68.60 1.68 56.19 16 23 H -0.32 -16.04 7.11 99.48 0.71 -15.33 16 24 H -0.28 -12.78 6.84 99.48 0.68 -12.10 16 25 H -0.25 -10.82 5.43 99.48 0.54 -10.28 16 26 C 0.14 5.22 6.16 86.63 0.53 5.75 16 27 C -0.11 -1.88 4.84 30.43 0.15 -1.74 16 28 C 0.11 1.26 6.07 86.43 0.53 1.78 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.06 0.89 6.15 -2.39 -0.01 0.88 16 32 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.13 1.07 6.79 -2.39 -0.02 1.05 16 37 H 0.12 1.14 7.61 -2.39 -0.02 1.12 16 38 H 0.07 2.01 6.99 -2.39 -0.02 1.99 16 39 H 0.08 1.78 6.55 -2.39 -0.02 1.77 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 42 H 0.09 2.06 6.17 -2.39 -0.01 2.05 16 43 H 0.10 2.06 7.98 -2.38 -0.02 2.04 16 44 H 0.03 1.14 6.79 -2.39 -0.02 1.12 16 45 H 0.02 0.92 3.81 -2.39 -0.01 0.91 16 46 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 47 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 48 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 49 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.12 0.64 5.91 -2.39 -0.01 0.63 16 52 H 0.09 0.86 7.62 -2.39 -0.02 0.84 16 Total: -1.00 -82.07 388.31 3.66 -78.41 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.67 Total: 11.50 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.77 Total: -17.44 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.42 Total: -110.26 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.40 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 1.68 Total: 56.19 kcal Total: -82.07 3.66 -78.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035253436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.113 kcal (2) G-P(sol) polarization free energy of solvation -82.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds