Wall clock time and date at job start Wed Apr 1 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38241 * 119.99997 * 2 1 4 4 C 1.38234 * 119.99784 * 180.22869 * 3 2 1 5 5 C 1.38237 * 119.99916 * 359.80632 * 4 3 2 6 6 C 1.38227 * 120.00305 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00432 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99873 * 179.78454 * 2 1 3 9 9 C 1.50692 * 120.00025 * 0.02562 * 8 2 1 10 10 C 1.50705 * 109.47128 * 269.72918 * 9 8 2 11 11 O 1.21276 * 120.00142 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99609 * 180.02562 * 10 9 8 13 13 C 1.46899 * 120.46034 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.73852 * 124.34102 * 13 12 10 15 15 C 1.52557 * 109.12684 * 52.26448 * 14 13 12 16 16 C 1.52961 * 114.06350 * 75.53928 * 15 14 13 17 17 N 1.47166 * 87.85098 * 139.44015 * 16 15 14 18 18 C 1.36935 * 135.99908 * 153.33520 * 17 16 15 19 19 H 1.08007 * 119.99881 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00109 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47257 * 90.00359 * 22 20 18 24 24 H 1.48504 * 109.46966 * 210.00435 * 22 20 18 25 25 H 1.48505 * 109.47124 * 329.99801 * 22 20 18 26 26 C 1.47167 * 87.99737 * 333.33822 * 17 16 15 27 27 C 1.52559 * 113.42991 * 302.66609 * 15 14 13 28 28 C 1.46888 * 120.46839 * 359.97438 * 12 10 9 29 29 H 1.08998 * 109.47101 * 270.21575 * 1 2 3 30 30 H 1.09002 * 109.47014 * 30.21880 * 1 2 3 31 31 H 1.08999 * 109.47137 * 150.21220 * 1 2 3 32 32 H 1.07997 * 119.99580 * 0.05892 * 3 2 1 33 33 H 1.07999 * 119.99783 * 179.83237 * 4 3 2 34 34 H 1.08004 * 119.99424 * 180.02562 * 5 4 3 35 35 H 1.09010 * 109.47075 * 269.97766 * 7 6 5 36 36 H 1.09004 * 109.46978 * 29.97391 * 7 6 5 37 37 H 1.08995 * 109.47787 * 149.97476 * 7 6 5 38 38 H 1.08998 * 109.47613 * 149.72890 * 9 8 2 39 39 H 1.09000 * 109.47576 * 29.72927 * 9 8 2 40 40 H 1.09002 * 109.58915 * 4.56791 * 13 12 10 41 41 H 1.08997 * 109.59383 * 244.12002 * 13 12 10 42 42 H 1.08997 * 109.52739 * 292.36609 * 14 13 12 43 43 H 1.08998 * 109.52289 * 172.15877 * 14 13 12 44 44 H 1.09005 * 113.49001 * 24.69405 * 16 15 14 45 45 H 1.09004 * 113.48696 * 254.18972 * 16 15 14 46 46 H 0.97007 * 119.99657 * 179.97438 * 21 20 18 47 47 H 1.09002 * 113.48648 * 141.41851 * 26 17 16 48 48 H 1.09003 * 113.48876 * 271.91675 * 26 17 16 49 49 H 1.08998 * 109.52765 * 177.21133 * 27 15 14 50 50 H 1.08999 * 109.53045 * 297.42501 * 27 15 14 51 51 H 1.09003 * 109.58723 * 355.42888 * 28 12 10 52 52 H 1.08994 * 109.59203 * 115.87142 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1971 -0.0009 7 6 4.3340 -2.5022 -0.0023 8 6 2.1982 -1.1972 0.0045 9 6 1.4447 -2.5022 0.0088 10 6 1.1988 -2.9356 1.4311 11 8 1.5967 -2.2522 2.3507 12 7 0.5376 -4.0831 1.6811 13 6 0.2928 -4.5155 3.0635 14 6 -1.2141 -4.7287 3.2535 15 6 -1.7304 -5.6536 2.1556 16 6 -1.3690 -7.1259 2.3594 17 7 -2.7240 -7.4653 1.8962 18 6 -3.3169 -8.5392 1.2876 19 1 -2.7302 -9.4120 1.0413 20 6 -4.6719 -8.5065 0.9882 21 7 -5.3868 -7.4431 1.2889 22 14 -5.4807 -9.9718 0.1586 23 1 -5.9855 -10.9099 1.1931 24 1 -6.6134 -9.5030 -0.6796 25 1 -4.4862 -10.6672 -0.6974 26 6 -3.1624 -6.1441 2.3740 27 6 -1.4571 -5.1350 0.7472 28 6 0.0517 -4.9188 0.5752 29 1 -0.3633 0.0039 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 1.6582 2.1324 0.0010 33 1 4.1206 2.1324 -0.0075 34 1 5.3517 0.0000 -0.0088 35 1 4.5109 -2.8186 -1.0304 36 1 5.2888 -2.3711 0.5069 37 1 3.7473 -3.2611 0.5154 38 1 2.0318 -3.2625 -0.5063 39 1 0.4904 -2.3725 -0.5016 40 1 0.6433 -3.7483 3.7539 41 1 0.8209 -5.4499 3.2532 42 1 -1.7281 -3.7694 3.1935 43 1 -1.3979 -5.1815 4.2278 44 1 -1.1876 -7.3885 3.4017 45 1 -0.5813 -7.4762 1.6923 46 1 -6.3337 -7.4201 1.0793 47 1 -3.8903 -5.6650 1.7193 48 1 -3.4682 -6.1400 3.4202 49 1 -1.8062 -5.8643 0.0162 50 1 -1.9800 -4.1901 0.5990 51 1 0.2434 -4.4173 -0.3734 52 1 0.5633 -5.8811 0.5922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035715992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:02 Heat of formation + Delta-G solvation = 39.071213 kcal Electronic energy + Delta-G solvation = -30589.226364 eV Core-core repulsion = 26747.955802 eV Total energy + Delta-G solvation = -3841.270563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.67673 -39.71087 -38.51302 -35.73685 -33.71603 -33.57037 -32.52227 -31.20525 -30.38582 -28.96223 -27.14807 -26.77607 -26.43528 -24.87168 -23.55962 -23.17569 -21.68066 -20.87451 -20.81563 -19.33507 -17.72162 -16.80622 -16.70950 -16.39336 -16.29768 -15.59762 -14.94496 -14.87653 -14.63164 -14.60286 -14.16346 -13.79863 -13.70894 -13.34991 -13.31438 -13.27539 -13.06556 -13.03385 -12.82245 -12.62881 -12.37457 -12.19825 -12.11698 -11.78599 -11.67531 -11.59921 -11.10220 -11.05900 -11.01922 -10.93551 -10.87167 -10.83175 -10.41479 -10.27148 -9.73747 -9.71150 -9.60840 -9.21129 -8.81722 -8.66205 -8.62517 -8.39267 -6.88068 -5.78260 -3.10223 1.24396 1.29318 2.70105 3.09566 3.36929 3.41853 3.43838 3.65494 4.43987 4.48282 4.63908 4.66418 4.77204 4.83526 4.94620 5.01448 5.04664 5.15524 5.16284 5.21339 5.31586 5.35441 5.38889 5.43604 5.49657 5.52140 5.52846 5.60718 5.62502 5.65517 5.69587 5.76904 5.83732 5.88251 6.01696 6.03396 6.11088 6.16240 6.27871 6.34931 6.38478 6.43265 6.50276 6.57067 6.58298 6.64433 6.79586 6.83501 6.93439 7.21399 7.34899 7.51904 7.55538 7.96524 8.26854 9.02506 9.69153 10.64298 11.39112 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.002379 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.409523 B =11767.799823 C =11945.285612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.117 4.117 8 C -0.063 4.063 9 C -0.109 4.109 10 C 0.518 3.482 11 O -0.539 6.539 12 N -0.606 5.606 13 C 0.116 3.884 14 C -0.113 4.113 15 C -0.114 4.114 16 C 0.127 3.873 17 N -0.608 5.608 18 C -0.216 4.216 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.166 3.834 27 C -0.094 4.094 28 C 0.106 3.894 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.253 0.747 47 H 0.070 0.930 48 H 0.023 0.977 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 14.518 -3.883 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.064 4.064 9 C -0.148 4.148 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.340 5.340 13 C -0.007 4.007 14 C -0.152 4.152 15 C -0.115 4.115 16 C 0.001 3.999 17 N -0.334 5.334 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.133 4.133 28 C -0.016 4.016 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.041 0.959 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.098 0.902 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.039 14.651 -3.555 22.751 hybrid contribution -0.670 -0.936 -0.230 1.174 sum 16.369 13.715 -3.785 21.688 Atomic orbital electron populations 1.20883 0.91292 1.02667 1.02761 1.19705 0.95936 0.92542 0.98457 1.20934 0.94244 0.97246 1.02090 1.21053 0.94289 0.97792 1.00190 1.20918 0.99476 0.91966 1.02248 1.19673 0.92950 0.95422 0.98772 1.20826 0.99958 0.94491 1.02040 1.18984 0.92718 0.93227 1.01423 1.20796 1.02297 0.96180 0.95561 1.20394 0.77737 0.80372 0.90959 1.90688 1.51135 1.53426 1.46403 1.48146 1.55709 1.22325 1.07821 1.21602 0.96592 1.00075 0.82396 1.21727 0.94389 1.00006 0.99109 1.22058 1.00978 0.94428 0.94072 1.22397 0.89864 0.91129 0.96525 1.45602 1.04639 1.16000 1.67141 1.18915 0.91832 0.93348 1.30243 0.90282 1.24776 0.96116 0.97879 1.01704 1.69831 1.06787 1.27958 1.52081 0.86147 0.79099 0.81757 0.78921 1.21677 1.21647 1.20634 1.22036 0.91721 0.85374 0.96805 1.21423 0.93330 1.01441 0.97065 1.21891 0.96150 0.94915 0.88667 0.90814 0.91528 0.91315 0.86269 0.86321 0.86329 0.91100 0.91488 0.91582 0.88059 0.87670 0.89543 0.91619 0.91877 0.90848 0.95266 0.94571 0.93694 0.91208 0.95934 0.89295 0.92074 0.90243 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.60 36.01 0.35 -0.85 16 2 C -0.07 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.13 -1.33 9.70 -39.58 -0.38 -1.72 16 4 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 5 C -0.13 -1.31 9.70 -39.59 -0.38 -1.70 16 6 C -0.07 -0.76 5.88 -104.63 -0.62 -1.38 16 7 C -0.12 -1.07 9.19 36.00 0.33 -0.74 16 8 C -0.06 -0.74 4.37 -104.63 -0.46 -1.20 16 9 C -0.11 -1.16 3.08 -29.04 -0.09 -1.25 16 10 C 0.52 7.01 7.28 -10.98 -0.08 6.93 16 11 O -0.54 -9.16 15.42 5.56 0.09 -9.08 16 12 N -0.61 -7.91 2.94 -172.59 -0.51 -8.41 16 13 C 0.12 1.56 6.35 -3.64 -0.02 1.54 16 14 C -0.11 -1.67 5.30 -26.77 -0.14 -1.81 16 15 C -0.11 -1.96 0.84 -155.02 -0.13 -2.09 16 16 C 0.13 2.47 7.63 -8.21 -0.06 2.40 16 17 N -0.61 -15.01 3.55 -184.67 -0.66 -15.66 16 18 C -0.22 -5.89 10.74 -15.06 -0.16 -6.06 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.83 11.51 55.49 0.64 -26.19 16 22 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.17 3.76 6.54 -8.22 -0.05 3.71 16 27 C -0.09 -1.46 5.28 -26.75 -0.14 -1.60 16 28 C 0.11 1.29 6.24 -3.63 -0.02 1.26 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.64 5.94 -51.93 -0.31 0.33 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 38 H 0.10 0.89 6.46 -51.93 -0.34 0.56 16 39 H 0.11 0.99 5.52 -51.93 -0.29 0.70 16 40 H 0.09 1.23 6.97 -51.93 -0.36 0.86 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 44 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 45 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.07 1.77 7.11 -51.93 -0.37 1.40 16 48 H 0.02 0.53 8.09 -51.93 -0.42 0.11 16 49 H 0.09 1.59 7.95 -51.93 -0.41 1.18 16 50 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.08 0.76 5.88 -51.93 -0.31 0.46 16 52 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -32.71 402.24 -11.10 -43.81 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.52 Total: 0.51 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.18 Total: -7.78 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.52 Total: -50.27 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.71 -11.10 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035715992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.883 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds