Wall clock time and date at job start Wed Apr 1 2020 01:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38241 * 119.99997 * 2 1 4 4 C 1.38234 * 119.99784 * 180.22869 * 3 2 1 5 5 C 1.38237 * 119.99916 * 359.80632 * 4 3 2 6 6 C 1.38227 * 120.00305 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00432 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99873 * 179.78454 * 2 1 3 9 9 C 1.50692 * 120.00025 * 0.02562 * 8 2 1 10 10 C 1.50705 * 109.47128 * 269.72918 * 9 8 2 11 11 O 1.21276 * 120.00142 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99609 * 180.02562 * 10 9 8 13 13 C 1.46899 * 120.46034 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.73852 * 124.34102 * 13 12 10 15 15 C 1.52557 * 109.12684 * 52.26448 * 14 13 12 16 16 C 1.52961 * 114.06350 * 75.53928 * 15 14 13 17 17 N 1.47166 * 87.85098 * 139.44015 * 16 15 14 18 18 C 1.36935 * 135.99908 * 153.33520 * 17 16 15 19 19 H 1.08007 * 119.99881 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00109 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47257 * 90.00359 * 22 20 18 24 24 H 1.48504 * 109.46966 * 210.00435 * 22 20 18 25 25 H 1.48505 * 109.47124 * 329.99801 * 22 20 18 26 26 C 1.47167 * 87.99737 * 333.33822 * 17 16 15 27 27 C 1.52559 * 113.42991 * 302.66609 * 15 14 13 28 28 C 1.46888 * 120.46839 * 359.97438 * 12 10 9 29 29 H 1.08998 * 109.47101 * 270.21575 * 1 2 3 30 30 H 1.09002 * 109.47014 * 30.21880 * 1 2 3 31 31 H 1.08999 * 109.47137 * 150.21220 * 1 2 3 32 32 H 1.07997 * 119.99580 * 0.05892 * 3 2 1 33 33 H 1.07999 * 119.99783 * 179.83237 * 4 3 2 34 34 H 1.08004 * 119.99424 * 180.02562 * 5 4 3 35 35 H 1.09010 * 109.47075 * 269.97766 * 7 6 5 36 36 H 1.09004 * 109.46978 * 29.97391 * 7 6 5 37 37 H 1.08995 * 109.47787 * 149.97476 * 7 6 5 38 38 H 1.08998 * 109.47613 * 149.72890 * 9 8 2 39 39 H 1.09000 * 109.47576 * 29.72927 * 9 8 2 40 40 H 1.09002 * 109.58915 * 4.56791 * 13 12 10 41 41 H 1.08997 * 109.59383 * 244.12002 * 13 12 10 42 42 H 1.08997 * 109.52739 * 292.36609 * 14 13 12 43 43 H 1.08998 * 109.52289 * 172.15877 * 14 13 12 44 44 H 1.09005 * 113.49001 * 24.69405 * 16 15 14 45 45 H 1.09004 * 113.48696 * 254.18972 * 16 15 14 46 46 H 0.97007 * 119.99657 * 179.97438 * 21 20 18 47 47 H 1.09002 * 113.48648 * 141.41851 * 26 17 16 48 48 H 1.09003 * 113.48876 * 271.91675 * 26 17 16 49 49 H 1.08998 * 109.52765 * 177.21133 * 27 15 14 50 50 H 1.08999 * 109.53045 * 297.42501 * 27 15 14 51 51 H 1.09003 * 109.58723 * 355.42888 * 28 12 10 52 52 H 1.08994 * 109.59203 * 115.87142 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1971 -0.0009 7 6 4.3340 -2.5022 -0.0023 8 6 2.1982 -1.1972 0.0045 9 6 1.4447 -2.5022 0.0088 10 6 1.1988 -2.9356 1.4311 11 8 1.5967 -2.2522 2.3507 12 7 0.5376 -4.0831 1.6811 13 6 0.2928 -4.5155 3.0635 14 6 -1.2141 -4.7287 3.2535 15 6 -1.7304 -5.6536 2.1556 16 6 -1.3690 -7.1259 2.3594 17 7 -2.7240 -7.4653 1.8962 18 6 -3.3169 -8.5392 1.2876 19 1 -2.7302 -9.4120 1.0413 20 6 -4.6719 -8.5065 0.9882 21 7 -5.3868 -7.4431 1.2889 22 14 -5.4807 -9.9718 0.1586 23 1 -5.9855 -10.9099 1.1931 24 1 -6.6134 -9.5030 -0.6796 25 1 -4.4862 -10.6672 -0.6974 26 6 -3.1624 -6.1441 2.3740 27 6 -1.4571 -5.1350 0.7472 28 6 0.0517 -4.9188 0.5752 29 1 -0.3633 0.0039 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 1.6582 2.1324 0.0010 33 1 4.1206 2.1324 -0.0075 34 1 5.3517 0.0000 -0.0088 35 1 4.5109 -2.8186 -1.0304 36 1 5.2888 -2.3711 0.5069 37 1 3.7473 -3.2611 0.5154 38 1 2.0318 -3.2625 -0.5063 39 1 0.4904 -2.3725 -0.5016 40 1 0.6433 -3.7483 3.7539 41 1 0.8209 -5.4499 3.2532 42 1 -1.7281 -3.7694 3.1935 43 1 -1.3979 -5.1815 4.2278 44 1 -1.1876 -7.3885 3.4017 45 1 -0.5813 -7.4762 1.6923 46 1 -6.3337 -7.4201 1.0793 47 1 -3.8903 -5.6650 1.7193 48 1 -3.4682 -6.1400 3.4202 49 1 -1.8062 -5.8643 0.0162 50 1 -1.9800 -4.1901 0.5990 51 1 0.2434 -4.4173 -0.3734 52 1 0.5633 -5.8811 0.5922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035715992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:00 Heat of formation + Delta-G solvation = 22.434368 kcal Electronic energy + Delta-G solvation = -30589.947792 eV Core-core repulsion = 26747.955802 eV Total energy + Delta-G solvation = -3841.991990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.76288 -40.83548 -39.68515 -37.03982 -34.54441 -34.45081 -34.25012 -32.44149 -31.81435 -29.86245 -28.68131 -27.50345 -27.46362 -26.53232 -25.01070 -24.33433 -23.10194 -21.96365 -21.56595 -20.46627 -18.93699 -18.65505 -17.94826 -17.22059 -17.18148 -16.86110 -16.53587 -16.09494 -15.94527 -15.64035 -15.37044 -15.08425 -15.01342 -14.52842 -14.33624 -14.08493 -14.03937 -13.89049 -13.78484 -13.74210 -13.52305 -13.46711 -13.19677 -13.07171 -12.88253 -12.81694 -12.58943 -12.48165 -12.37766 -12.16654 -12.10215 -11.75293 -11.73066 -11.64103 -11.60446 -11.12429 -10.90639 -10.82360 -10.76440 -9.55069 -9.44958 -9.38277 -8.87875 -7.88110 -5.20676 0.46553 0.52468 1.46303 1.47871 1.56412 1.67272 2.08509 2.48797 2.86563 3.33344 3.47689 3.59678 3.67360 3.75467 3.90262 3.92077 4.05774 4.14258 4.15773 4.21874 4.23090 4.36447 4.39549 4.44244 4.49339 4.58251 4.64467 4.71177 4.76659 4.78509 4.81016 4.84095 4.84781 4.86821 4.89581 4.91607 5.00391 5.02117 5.10029 5.16382 5.24610 5.29495 5.32427 5.37286 5.37791 5.55894 5.59802 5.63707 5.68909 5.77569 5.79435 5.96158 6.19789 6.48154 6.93437 7.23094 7.63279 8.65450 9.29450 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.002379 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.409523 B =11767.799823 C =11945.285612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.139 4.139 6 C -0.084 4.084 7 C -0.114 4.114 8 C -0.083 4.083 9 C -0.104 4.104 10 C 0.520 3.480 11 O -0.576 6.576 12 N -0.606 5.606 13 C 0.121 3.879 14 C -0.105 4.105 15 C -0.085 4.085 16 C 0.130 3.870 17 N -0.637 5.637 18 C -0.222 4.222 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.976 3.024 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.161 3.839 27 C -0.091 4.091 28 C 0.116 3.884 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.054 0.946 46 H 0.246 0.754 47 H 0.034 0.966 48 H 0.007 0.993 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.111 0.889 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.396 14.540 -5.032 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.157 4.157 6 C -0.084 4.084 7 C -0.171 4.171 8 C -0.084 4.084 9 C -0.143 4.143 10 C 0.309 3.691 11 O -0.456 6.456 12 N -0.339 5.339 13 C -0.002 4.002 14 C -0.144 4.144 15 C -0.086 4.086 16 C 0.005 3.995 17 N -0.362 5.362 18 C -0.350 4.350 19 H 0.103 0.897 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.804 3.196 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.035 3.965 27 C -0.130 4.130 28 C -0.006 4.006 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.024 0.976 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.130 0.870 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.358 14.661 -4.707 24.735 hybrid contribution -1.344 -0.896 0.183 1.625 sum 18.014 13.765 -4.524 23.119 Atomic orbital electron populations 1.20874 0.90757 1.03733 1.02016 1.19986 0.96635 0.93055 0.98900 1.21231 0.94862 0.97704 1.02066 1.21392 0.94324 0.98795 0.99347 1.21244 1.00607 0.91922 1.01934 1.20012 0.93124 0.96583 0.98657 1.20842 0.99782 0.93318 1.03131 1.19195 0.93280 0.93651 1.02230 1.20826 1.03318 0.96478 0.93705 1.20854 0.76793 0.79670 0.91768 1.90674 1.52675 1.54416 1.47826 1.48192 1.55492 1.22410 1.07760 1.21517 0.95178 1.00563 0.82914 1.21648 0.95466 0.99070 0.98226 1.21840 0.96399 0.94172 0.96189 1.22541 0.87917 0.92089 0.96989 1.45942 1.07077 1.15934 1.67292 1.19318 0.92198 0.94084 1.29448 0.89723 1.25597 0.96897 1.00496 1.03163 1.70030 1.06492 1.29931 1.53871 0.85110 0.77998 0.78601 0.77843 1.21786 1.22222 1.18964 1.22019 0.94263 0.85350 0.94901 1.21360 0.96128 1.00566 0.94900 1.21897 0.93200 0.95820 0.89732 0.92356 0.90070 0.90736 0.84822 0.84133 0.84493 0.89302 0.90877 0.92458 0.85834 0.86327 0.90032 0.90291 0.92162 0.90436 0.94434 0.92817 0.94471 0.94721 0.97551 0.91752 0.91959 0.87048 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.60 71.24 0.68 -1.54 16 2 C -0.09 -1.87 5.88 -19.86 -0.12 -1.99 16 3 C -0.14 -2.78 9.70 22.27 0.22 -2.56 16 4 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 5 C -0.14 -2.61 9.70 22.27 0.22 -2.39 16 6 C -0.08 -1.72 5.88 -19.87 -0.12 -1.84 16 7 C -0.11 -1.83 9.19 71.23 0.65 -1.17 16 8 C -0.08 -1.82 4.37 -19.87 -0.09 -1.91 16 9 C -0.10 -1.98 3.08 29.10 0.09 -1.89 16 10 C 0.52 13.07 7.28 87.66 0.64 13.71 16 11 O -0.58 -19.00 15.42 -3.02 -0.05 -19.05 16 12 N -0.61 -14.36 2.94 -818.35 -2.41 -16.77 16 13 C 0.12 3.03 6.35 86.43 0.55 3.58 16 14 C -0.11 -2.98 5.30 30.57 0.16 -2.82 16 15 C -0.08 -2.87 0.84 -52.51 -0.04 -2.92 16 16 C 0.13 4.87 7.63 83.32 0.64 5.51 16 17 N -0.64 -31.68 3.55 -738.16 -2.62 -34.30 16 18 C -0.22 -12.20 10.74 84.03 0.90 -11.29 16 19 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.95 -57.49 11.51 21.65 0.25 -57.24 16 22 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.16 7.48 6.54 83.31 0.55 8.03 16 27 C -0.09 -2.71 5.28 30.58 0.16 -2.55 16 28 C 0.12 2.46 6.24 86.44 0.54 3.00 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 31 H 0.07 1.27 5.94 -2.39 -0.01 1.26 16 32 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 37 H 0.06 1.01 6.37 -2.39 -0.02 0.99 16 38 H 0.12 1.76 6.46 -2.39 -0.02 1.75 16 39 H 0.12 1.91 5.52 -2.39 -0.01 1.90 16 40 H 0.08 2.20 6.97 -2.39 -0.02 2.18 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 44 H 0.04 1.38 8.06 -2.38 -0.02 1.36 16 45 H 0.05 1.84 7.53 -2.39 -0.02 1.82 16 46 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 47 H 0.03 1.84 7.11 -2.39 -0.02 1.82 16 48 H 0.01 0.33 8.09 -2.39 -0.02 0.31 16 49 H 0.06 2.27 7.95 -2.39 -0.02 2.25 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.11 1.71 5.88 -2.39 -0.01 1.70 16 52 H 0.08 1.65 7.60 -2.39 -0.02 1.63 16 Total: -1.00 -72.67 402.24 4.43 -68.24 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.90 Total: 18.29 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 6.32 Total: -6.41 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.78 Total: -108.32 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.67 4.43 -68.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035715992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.678 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds