Wall clock time and date at job start Wed Apr 1 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47267 * 2 1 4 4 C 1.38251 * 120.00121 * 265.20694 * 3 2 1 5 5 C 1.38216 * 120.00114 * 180.23436 * 4 3 2 6 6 C 1.38260 * 119.99607 * 359.81218 * 5 4 3 7 7 C 1.38216 * 120.00320 * 359.97438 * 6 5 4 8 8 C 1.38213 * 119.99766 * 85.00000 * 3 2 1 9 9 C 1.50702 * 119.99997 * 359.97438 * 8 3 2 10 10 C 1.50707 * 109.46979 * 84.73337 * 9 8 3 11 11 O 1.21283 * 119.99788 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99661 * 180.02562 * 10 9 8 13 13 C 1.46886 * 120.49260 * 179.97438 * 12 10 9 14 14 C 1.53321 * 108.76878 * 124.36732 * 13 12 10 15 15 C 1.52672 * 109.16471 * 52.39563 * 14 13 12 16 16 C 1.53489 * 113.61911 * 74.08605 * 15 14 13 17 17 N 1.47666 * 85.98904 * 137.71308 * 16 15 14 18 18 C 1.36933 * 134.45737 * 155.70668 * 17 16 15 19 19 H 1.08001 * 120.00267 * 179.97438 * 18 17 16 20 20 C 1.38817 * 120.00446 * 359.95833 * 18 17 16 21 21 N 1.31620 * 119.99279 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00299 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47012 * 90.00220 * 22 20 18 24 24 H 1.48499 * 109.46933 * 209.99774 * 22 20 18 25 25 H 1.48497 * 109.47267 * 329.99790 * 22 20 18 26 26 C 1.47657 * 91.08382 * 335.67780 * 17 16 15 27 27 C 1.52669 * 113.19633 * 302.56171 * 15 14 13 28 28 C 1.46894 * 120.49850 * 359.97033 * 12 10 9 29 29 H 1.09000 * 109.47147 * 300.00091 * 1 2 3 30 30 H 1.09007 * 109.46464 * 60.00009 * 1 2 3 31 31 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47147 * 239.99909 * 2 1 3 33 33 H 1.09002 * 109.46565 * 120.00478 * 2 1 3 34 34 H 1.08000 * 119.99969 * 0.06600 * 4 3 2 35 35 H 1.07999 * 120.00153 * 179.83810 * 5 4 3 36 36 H 1.08000 * 119.99785 * 180.02562 * 6 5 4 37 37 H 1.07996 * 119.99984 * 179.97438 * 7 6 5 38 38 H 1.08989 * 109.47506 * 324.72907 * 9 8 3 39 39 H 1.09000 * 109.47109 * 204.72311 * 9 8 3 40 40 H 1.09010 * 109.58905 * 244.15674 * 13 12 10 41 41 H 1.08998 * 109.59117 * 4.58170 * 13 12 10 42 42 H 1.09001 * 109.52459 * 172.29676 * 14 13 12 43 43 H 1.09002 * 109.52564 * 292.48763 * 14 13 12 44 44 H 1.08993 * 113.79524 * 251.98483 * 16 15 14 45 45 H 1.09002 * 113.78982 * 23.44870 * 16 15 14 46 46 H 0.97004 * 119.99526 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.78987 * 270.05396 * 26 17 16 48 48 H 1.09002 * 113.79468 * 138.58416 * 26 17 16 49 49 H 1.08997 * 109.52094 * 297.54154 * 27 15 14 50 50 H 1.09005 * 109.51936 * 177.35314 * 27 15 14 51 51 H 1.08994 * 109.58889 * 355.42269 * 28 12 10 52 52 H 1.09001 * 109.58787 * 115.85432 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3572 2.0392 -1.1931 5 6 2.8225 3.3406 -1.1927 6 6 2.9595 4.0254 0.0006 7 6 2.6306 3.4086 1.1930 8 6 2.1644 2.1070 1.1924 9 6 1.8054 1.4347 2.4925 10 6 2.9821 0.6318 2.9845 11 8 4.0107 0.6076 2.3424 12 7 2.8909 -0.0601 4.1375 13 6 4.0308 -0.8466 4.6269 14 6 4.3740 -0.3860 6.0484 15 6 3.1120 -0.4261 6.9067 16 6 2.6782 -1.8459 7.2964 17 7 2.4143 -1.2857 8.6369 18 6 1.6020 -1.6391 9.6811 19 1 1.5921 -1.0447 10.5828 20 6 0.7908 -2.7612 9.5807 21 7 0.8023 -3.4851 8.4815 22 14 -0.3167 -3.2436 11.0054 23 1 -1.6371 -2.5817 10.8520 24 1 -0.4997 -4.7173 11.0130 25 1 0.3062 -2.8156 12.2836 26 6 3.3778 -0.1921 8.4004 27 6 1.9770 0.4281 6.3474 28 6 1.6502 -0.0388 4.9236 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2498 1.5044 -2.1252 35 1 3.0787 3.8228 -2.1245 36 1 3.3227 5.0424 0.0009 37 1 2.7381 3.9434 2.1252 38 1 0.9538 0.7728 2.3362 39 1 1.5466 2.1911 3.2334 40 1 3.7668 -1.9042 4.6391 41 1 4.8899 -0.6899 3.9746 42 1 5.1258 -1.0500 6.4750 43 1 4.7615 0.6324 6.0179 44 1 1.7825 -2.1896 6.7793 45 1 3.4888 -2.5745 7.2762 46 1 0.2352 -4.2689 8.4111 47 1 4.3962 -0.4292 8.7082 48 1 3.0381 0.7789 8.7606 49 1 2.2843 1.4737 6.3266 50 1 1.0945 0.3193 6.9779 51 1 0.9400 0.6504 4.4668 52 1 1.2212 -1.0403 4.9565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035730908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:07 Heat of formation + Delta-G solvation = 17.837240 kcal Electronic energy + Delta-G solvation = -30554.321819 eV Core-core repulsion = 26712.130482 eV Total energy + Delta-G solvation = -3842.191337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70082 -40.70131 -39.60920 -36.99818 -35.19918 -34.43649 -33.66325 -32.24993 -31.79380 -30.35296 -29.00685 -28.12674 -26.71551 -25.13456 -24.65766 -24.34165 -23.20839 -22.55424 -21.51858 -20.47014 -18.97721 -18.62091 -17.93226 -17.38304 -17.09001 -16.77971 -16.62729 -16.07838 -16.02486 -15.79020 -15.55316 -15.12326 -14.83842 -14.63355 -14.54436 -14.32763 -14.07450 -13.94459 -13.83775 -13.68680 -13.48633 -13.08987 -13.02088 -12.87687 -12.79349 -12.75389 -12.66742 -12.62260 -12.17545 -12.13911 -12.07966 -11.70659 -11.63429 -11.57528 -11.52169 -11.07769 -10.96257 -10.84949 -10.77631 -9.64719 -9.56783 -9.43503 -8.85317 -7.86498 -5.18425 0.47008 0.55787 1.46630 1.47758 1.55955 1.66038 2.06831 2.49675 2.90600 3.33940 3.44582 3.62686 3.66241 3.74623 3.88429 3.91083 4.04686 4.11802 4.14966 4.22084 4.33291 4.36307 4.38630 4.40427 4.49945 4.54139 4.63213 4.67371 4.71021 4.74378 4.78464 4.82885 4.85661 4.88313 4.96286 5.04318 5.06551 5.09616 5.10113 5.18299 5.23181 5.26921 5.29290 5.40697 5.41972 5.55556 5.62358 5.63703 5.66924 5.78031 5.79646 5.99694 6.18573 6.47740 6.97357 7.20994 7.65425 8.62950 9.29871 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002496 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.017228 B =11215.225762 C =11821.110399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.078 4.078 9 C -0.102 4.102 10 C 0.518 3.482 11 O -0.576 6.576 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.106 4.106 15 C -0.083 4.083 16 C 0.175 3.825 17 N -0.638 5.638 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.973 3.027 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.273 1.273 26 C 0.122 3.878 27 C -0.092 4.092 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.004 0.996 46 H 0.247 0.753 47 H 0.040 0.960 48 H 0.053 0.947 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.114 0.886 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 13.791 -18.692 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.137 4.137 8 C -0.079 4.079 9 C -0.141 4.141 10 C 0.308 3.692 11 O -0.456 6.456 12 N -0.336 5.336 13 C -0.005 4.005 14 C -0.145 4.145 15 C -0.084 4.084 16 C 0.050 3.950 17 N -0.364 5.364 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.802 3.198 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.199 1.199 26 C -0.002 4.002 27 C -0.130 4.130 28 C -0.009 4.009 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.132 0.868 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.287 13.587 -18.830 23.256 hybrid contribution -0.308 -1.027 1.258 1.653 sum 0.979 12.559 -17.573 21.622 Atomic orbital electron populations 1.21751 0.93309 1.02452 1.02536 1.20549 0.97140 0.92313 1.02399 1.19901 0.98710 0.96172 0.93086 1.21244 1.00213 0.95781 0.97688 1.21421 0.99171 0.94737 0.98949 1.21372 1.00513 1.00928 0.92399 1.21240 0.98731 0.94619 0.99135 1.19325 1.00549 0.94492 0.93488 1.20822 0.96801 1.00390 0.96116 1.20910 0.89520 0.78957 0.79797 1.90673 1.32934 1.64876 1.57149 1.48163 1.15015 1.48114 1.22347 1.21486 0.89463 0.94657 0.94940 1.21710 0.96592 1.02235 0.93923 1.22145 0.95727 0.96741 0.93837 1.22127 0.96066 0.92104 0.84698 1.46360 1.44615 1.30054 1.15385 1.19366 1.14432 1.07698 0.94387 0.90351 1.25519 1.02175 0.97978 1.00097 1.69996 1.43237 1.18887 1.27795 0.85162 0.78981 0.76560 0.79131 1.21038 1.22379 1.19856 1.22778 0.92455 0.91907 0.93103 1.21429 0.97601 0.98817 0.95158 1.21837 0.85403 1.02669 0.90973 0.92234 0.91886 0.91621 0.90749 0.92753 0.84845 0.84101 0.84276 0.85236 0.86482 0.85882 0.92046 0.89718 0.90708 0.90739 0.93678 0.97779 0.94422 0.94266 0.92852 0.90158 0.91846 0.86791 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.72 71.98 0.70 -1.51 16 2 C -0.09 -1.69 5.38 29.85 0.16 -1.53 16 3 C -0.08 -1.70 5.13 -19.87 -0.10 -1.80 16 4 C -0.13 -2.53 9.68 22.27 0.22 -2.31 16 5 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 6 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 7 C -0.12 -2.44 9.68 22.27 0.22 -2.22 16 8 C -0.08 -1.72 4.37 -19.87 -0.09 -1.80 16 9 C -0.10 -2.03 3.50 29.10 0.10 -1.92 16 10 C 0.52 13.85 6.87 87.66 0.60 14.45 16 11 O -0.58 -19.63 15.43 -3.04 -0.05 -19.67 16 12 N -0.60 -15.97 2.94 -818.49 -2.41 -18.37 16 13 C 0.12 3.33 6.31 86.41 0.55 3.88 16 14 C -0.11 -3.01 5.25 30.59 0.16 -2.85 16 15 C -0.08 -2.83 0.77 -52.03 -0.04 -2.87 16 16 C 0.18 7.95 6.32 86.31 0.55 8.50 16 17 N -0.64 -31.76 3.53 -722.63 -2.55 -34.31 16 18 C -0.23 -12.70 10.70 84.04 0.90 -11.80 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 21 N -0.95 -56.08 11.39 21.65 0.25 -55.83 16 22 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 C 0.12 4.74 8.07 86.32 0.70 5.43 16 27 C -0.09 -2.69 5.21 30.61 0.16 -2.53 16 28 C 0.11 2.84 6.22 86.43 0.54 3.38 16 29 H 0.06 0.88 6.79 -2.39 -0.02 0.87 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 33 H 0.05 1.25 6.40 -2.39 -0.02 1.23 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.12 2.00 5.39 -2.39 -0.01 1.98 16 39 H 0.12 1.88 7.63 -2.39 -0.02 1.86 16 40 H 0.06 1.84 8.09 -2.38 -0.02 1.82 16 41 H 0.08 2.47 6.98 -2.39 -0.02 2.46 16 42 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 2.28 6.47 -2.39 -0.02 2.26 16 45 H 0.00 0.21 8.07 -2.39 -0.02 0.19 16 46 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 48 H 0.05 1.93 8.09 -2.39 -0.02 1.92 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.06 2.22 8.01 -2.38 -0.02 2.20 16 51 H 0.11 2.06 5.89 -2.39 -0.01 2.05 16 52 H 0.06 1.80 7.52 -2.39 -0.02 1.78 16 Total: -1.00 -70.51 403.48 4.39 -66.12 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.89 Total: 19.69 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 6.22 Total: -4.85 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.71 Total: -108.52 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.51 4.39 -66.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035730908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.957 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds