Wall clock time and date at job start Wed Apr 1 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47062 * 2 1 4 4 C 1.38254 * 120.00208 * 90.00063 * 3 2 1 5 5 C 1.38218 * 119.99922 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99801 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99681 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 89.99962 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46883 * 120.46346 * 359.71886 * 11 9 8 13 13 C 1.52856 * 109.02098 * 235.48957 * 12 11 9 14 14 C 1.52669 * 109.17335 * 307.82331 * 13 12 11 15 15 C 1.53491 * 113.62291 * 188.99410 * 14 13 12 16 16 N 1.47665 * 85.98810 * 137.70223 * 15 14 13 17 17 C 1.36938 * 134.45600 * 155.71366 * 16 15 14 18 18 H 1.08001 * 119.99745 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00042 * 359.95366 * 17 16 15 20 20 N 1.31618 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47034 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47095 * 120.00297 * 21 19 17 24 24 H 1.48506 * 109.46787 * 240.00180 * 21 19 17 25 25 C 1.47668 * 91.08853 * 335.68125 * 16 15 14 26 26 C 1.52667 * 113.18940 * 57.45945 * 14 13 12 27 27 C 1.46881 * 120.46702 * 180.02562 * 11 9 8 28 28 C 1.38220 * 119.99954 * 270.27903 * 3 2 1 29 29 H 1.08996 * 109.47312 * 60.00594 * 1 2 3 30 30 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46721 * 299.99581 * 1 2 3 32 32 H 1.09003 * 109.46852 * 239.99940 * 2 1 3 33 33 H 1.08996 * 109.47171 * 120.00179 * 2 1 3 34 34 H 1.07994 * 119.99679 * 0.02562 * 4 3 2 35 35 H 1.07993 * 119.99708 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.00027 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 209.99926 * 8 7 6 38 38 H 1.09001 * 109.47380 * 330.00013 * 8 7 6 39 39 H 1.09006 * 109.58944 * 355.31958 * 12 11 9 40 40 H 1.09000 * 109.59059 * 115.74922 * 12 11 9 41 41 H 1.08995 * 109.61045 * 187.83967 * 13 12 11 42 42 H 1.08999 * 109.38476 * 67.66187 * 13 12 11 43 43 H 1.08994 * 113.78742 * 251.97433 * 15 14 13 44 44 H 1.09003 * 113.78501 * 23.43526 * 15 14 13 45 45 H 0.96999 * 120.00163 * 180.02562 * 20 19 17 46 46 H 1.08997 * 113.79132 * 270.05059 * 25 16 15 47 47 H 1.08996 * 113.79088 * 138.58032 * 25 16 15 48 48 H 1.09006 * 109.53327 * 182.51919 * 26 14 13 49 49 H 1.08997 * 109.53294 * 62.29531 * 26 14 13 50 50 H 1.08997 * 109.58548 * 244.25686 * 27 11 9 51 51 H 1.08996 * 109.58668 * 4.68632 * 27 11 9 52 52 H 1.08003 * 120.00036 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7230 3.3759 1.1972 6 6 2.9524 4.0280 -0.0001 7 6 2.7220 3.3763 -1.1971 8 6 2.9715 4.0873 -2.5022 9 6 4.3948 3.8523 -2.9382 10 8 5.1339 3.1746 -2.2560 11 7 4.8466 4.3960 -4.0856 12 6 3.9589 5.2143 -4.9221 13 6 3.9295 4.6321 -6.3352 14 6 5.3611 4.4639 -6.8381 15 6 5.4512 4.0925 -8.3246 16 7 6.5615 5.0636 -8.3933 17 6 7.6432 5.2268 -9.2169 18 1 8.3299 6.0437 -9.0509 19 6 7.8575 4.3421 -10.2649 20 7 7.0205 3.3467 -10.4673 21 14 9.3327 4.5653 -11.3889 22 1 10.1122 5.7517 -10.9530 23 1 10.1923 3.3561 -11.3234 24 1 8.8659 4.7657 -12.7844 25 6 6.0375 5.7885 -7.2184 26 6 6.2159 3.5795 -5.9338 27 6 6.2318 4.1731 -4.5206 28 6 2.2572 2.0743 -1.1970 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0832 1.5633 2.1325 35 1 2.9026 3.8851 2.1325 36 1 3.3116 5.0464 -0.0001 37 1 2.2906 3.7026 -3.2615 38 1 2.8033 5.1563 -2.3715 39 1 2.9522 5.2057 -4.5040 40 1 4.3325 6.2376 -4.9594 41 1 3.3873 5.3069 -6.9976 42 1 3.4335 3.6617 -6.3164 43 1 5.7570 3.0616 -8.5025 44 1 4.5754 4.3842 -8.9045 45 1 7.1704 2.7282 -11.1993 46 1 5.3361 6.5841 -7.4695 47 1 6.8093 6.1054 -6.5170 48 1 7.2334 3.5364 -6.3225 49 1 5.7939 2.5750 -5.9021 50 1 6.7692 5.1213 -4.5287 51 1 6.7218 3.4788 -3.8381 52 1 2.0733 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035734371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:20 Heat of formation + Delta-G solvation = 31.388430 kcal Electronic energy + Delta-G solvation = -29763.058900 eV Core-core repulsion = 25921.455187 eV Total energy + Delta-G solvation = -3841.603713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.16 seconds Orbital eigenvalues (eV) -40.50800 -39.57821 -38.50705 -35.72825 -34.64098 -32.79179 -32.40419 -31.02975 -30.47615 -29.67283 -27.82892 -26.66215 -25.02777 -24.15355 -23.59084 -23.19377 -22.16557 -21.31752 -20.62565 -19.26697 -17.68011 -16.76309 -16.71026 -16.65491 -15.99121 -15.78369 -15.16554 -14.96513 -14.83814 -14.63357 -14.06076 -13.97457 -13.77286 -13.68335 -13.59517 -13.28682 -13.18500 -13.06129 -12.43242 -12.34765 -12.28685 -12.18585 -11.95266 -11.94180 -11.68645 -11.47146 -11.11985 -11.05545 -11.00097 -10.94819 -10.86990 -10.81892 -10.32765 -10.15094 -9.80503 -9.70867 -9.52667 -9.34557 -8.89151 -8.78428 -8.71912 -8.40640 -6.85079 -5.75608 -3.07261 1.20856 1.28857 2.69630 3.08544 3.38793 3.44283 3.46709 3.65973 4.44459 4.46414 4.51417 4.63879 4.67380 4.90167 4.92069 4.96212 5.03060 5.07639 5.11030 5.21701 5.24765 5.28067 5.33251 5.36392 5.38127 5.45219 5.49905 5.54832 5.64665 5.65159 5.70517 5.86100 5.87991 5.91893 5.95905 5.97501 5.98914 6.19458 6.28241 6.31073 6.33363 6.43699 6.45536 6.49337 6.63112 6.65408 6.81460 6.87832 6.89834 7.24636 7.38681 7.51825 7.59932 8.00208 8.26269 9.06450 9.72522 10.62679 11.41439 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023412 B = 0.002067 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.695325 B =13542.055494 C =13912.740190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.515 3.485 10 O -0.539 6.539 11 N -0.606 5.606 12 C 0.108 3.892 13 C -0.119 4.119 14 C -0.108 4.108 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.126 3.874 26 C -0.096 4.096 27 C 0.114 3.886 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.040 0.960 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -0.476 21.569 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.302 3.698 10 O -0.416 6.416 11 N -0.340 5.340 12 C -0.014 4.014 13 C -0.158 4.158 14 C -0.109 4.109 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.000 4.000 26 C -0.134 4.134 27 C -0.008 4.008 28 C -0.120 4.120 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.105 0.895 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.070 -0.904 21.650 25.836 hybrid contribution 0.747 0.312 -1.009 1.293 sum -13.323 -0.592 20.642 24.575 Atomic orbital electron populations 1.21744 0.94755 1.01649 1.02154 1.20545 0.96094 0.92754 1.02932 1.19826 0.99164 0.96078 0.93085 1.20972 1.00582 0.95008 0.97350 1.21047 0.99678 0.94978 0.97790 1.20942 0.99915 0.99986 0.92007 1.19285 0.98579 0.94376 0.93667 1.20726 0.95179 1.02293 0.96068 1.20441 0.89274 0.79389 0.80666 1.90704 1.58162 1.38976 1.53749 1.48139 1.13092 1.50985 1.21751 1.21702 0.93551 0.94669 0.91519 1.21752 0.97973 1.01270 0.94849 1.22383 0.92855 0.97970 0.97739 1.22231 0.89196 0.96423 0.87369 1.45969 1.24798 1.30278 1.32495 1.19054 0.99295 1.10057 1.06372 0.90372 1.24764 0.98909 0.97954 0.98912 1.69824 1.37299 1.17211 1.32509 0.86086 0.81977 0.77335 0.80610 1.20515 1.21735 1.21836 1.22591 0.94726 0.93000 0.89669 1.21471 1.01603 0.97864 0.92439 1.21672 0.81423 1.01274 0.96462 1.20844 0.99605 0.93925 0.97631 0.92508 0.92454 0.92653 0.90958 0.91114 0.86420 0.86219 0.86389 0.87964 0.88071 0.90300 0.91139 0.90626 0.91814 0.91030 0.95788 0.93767 0.95169 0.94181 0.89536 0.92203 0.91545 0.89461 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 7 C -0.06 -0.65 4.37 -104.62 -0.46 -1.11 16 8 C -0.10 -1.01 4.17 -29.03 -0.12 -1.13 16 9 C 0.51 6.99 7.69 -10.98 -0.08 6.90 16 10 O -0.54 -9.43 15.42 5.56 0.09 -9.34 16 11 N -0.61 -7.96 2.95 -172.98 -0.51 -8.47 16 12 C 0.11 1.17 6.19 -3.91 -0.02 1.15 16 13 C -0.12 -1.58 5.24 -26.98 -0.14 -1.72 16 14 C -0.11 -1.88 0.77 -154.42 -0.12 -2.00 16 15 C 0.17 3.94 6.64 -3.16 -0.02 3.91 16 16 N -0.61 -15.20 3.53 -179.75 -0.64 -15.84 16 17 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.20 11.39 55.49 0.63 -26.57 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 C 0.13 2.45 7.73 -3.14 -0.02 2.42 16 26 C -0.10 -1.63 5.21 -26.75 -0.14 -1.77 16 27 C 0.11 1.69 6.30 -3.68 -0.02 1.67 16 28 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.10 0.83 7.65 -51.93 -0.40 0.43 16 38 H 0.10 0.76 7.85 -51.93 -0.41 0.36 16 39 H 0.08 0.62 5.89 -51.93 -0.31 0.32 16 40 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 44 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 47 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 48 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.07 0.96 7.49 -51.93 -0.39 0.58 16 51 H 0.09 1.39 6.98 -51.93 -0.36 1.02 16 52 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -33.35 410.59 -11.46 -44.80 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.90 Total: -0.70 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.29 Total: -7.22 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.51 Total: -50.88 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.35 -11.46 -44.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035734371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.192 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.16 seconds