Wall clock time and date at job start Wed Apr 1 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47062 * 2 1 4 4 C 1.38254 * 120.00208 * 90.00063 * 3 2 1 5 5 C 1.38218 * 119.99922 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99801 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99681 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 89.99962 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46883 * 120.46346 * 359.71886 * 11 9 8 13 13 C 1.52856 * 109.02098 * 235.48957 * 12 11 9 14 14 C 1.52669 * 109.17335 * 307.82331 * 13 12 11 15 15 C 1.53491 * 113.62291 * 188.99410 * 14 13 12 16 16 N 1.47665 * 85.98810 * 137.70223 * 15 14 13 17 17 C 1.36938 * 134.45600 * 155.71366 * 16 15 14 18 18 H 1.08001 * 119.99745 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00042 * 359.95366 * 17 16 15 20 20 N 1.31618 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47034 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47095 * 120.00297 * 21 19 17 24 24 H 1.48506 * 109.46787 * 240.00180 * 21 19 17 25 25 C 1.47668 * 91.08853 * 335.68125 * 16 15 14 26 26 C 1.52667 * 113.18940 * 57.45945 * 14 13 12 27 27 C 1.46881 * 120.46702 * 180.02562 * 11 9 8 28 28 C 1.38220 * 119.99954 * 270.27903 * 3 2 1 29 29 H 1.08996 * 109.47312 * 60.00594 * 1 2 3 30 30 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46721 * 299.99581 * 1 2 3 32 32 H 1.09003 * 109.46852 * 239.99940 * 2 1 3 33 33 H 1.08996 * 109.47171 * 120.00179 * 2 1 3 34 34 H 1.07994 * 119.99679 * 0.02562 * 4 3 2 35 35 H 1.07993 * 119.99708 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.00027 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 209.99926 * 8 7 6 38 38 H 1.09001 * 109.47380 * 330.00013 * 8 7 6 39 39 H 1.09006 * 109.58944 * 355.31958 * 12 11 9 40 40 H 1.09000 * 109.59059 * 115.74922 * 12 11 9 41 41 H 1.08995 * 109.61045 * 187.83967 * 13 12 11 42 42 H 1.08999 * 109.38476 * 67.66187 * 13 12 11 43 43 H 1.08994 * 113.78742 * 251.97433 * 15 14 13 44 44 H 1.09003 * 113.78501 * 23.43526 * 15 14 13 45 45 H 0.96999 * 120.00163 * 180.02562 * 20 19 17 46 46 H 1.08997 * 113.79132 * 270.05059 * 25 16 15 47 47 H 1.08996 * 113.79088 * 138.58032 * 25 16 15 48 48 H 1.09006 * 109.53327 * 182.51919 * 26 14 13 49 49 H 1.08997 * 109.53294 * 62.29531 * 26 14 13 50 50 H 1.08997 * 109.58548 * 244.25686 * 27 11 9 51 51 H 1.08996 * 109.58668 * 4.68632 * 27 11 9 52 52 H 1.08003 * 120.00036 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7230 3.3759 1.1972 6 6 2.9524 4.0280 -0.0001 7 6 2.7220 3.3763 -1.1971 8 6 2.9715 4.0873 -2.5022 9 6 4.3948 3.8523 -2.9382 10 8 5.1339 3.1746 -2.2560 11 7 4.8466 4.3960 -4.0856 12 6 3.9589 5.2143 -4.9221 13 6 3.9295 4.6321 -6.3352 14 6 5.3611 4.4639 -6.8381 15 6 5.4512 4.0925 -8.3246 16 7 6.5615 5.0636 -8.3933 17 6 7.6432 5.2268 -9.2169 18 1 8.3299 6.0437 -9.0509 19 6 7.8575 4.3421 -10.2649 20 7 7.0205 3.3467 -10.4673 21 14 9.3327 4.5653 -11.3889 22 1 10.1122 5.7517 -10.9530 23 1 10.1923 3.3561 -11.3234 24 1 8.8659 4.7657 -12.7844 25 6 6.0375 5.7885 -7.2184 26 6 6.2159 3.5795 -5.9338 27 6 6.2318 4.1731 -4.5206 28 6 2.2572 2.0743 -1.1970 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0832 1.5633 2.1325 35 1 2.9026 3.8851 2.1325 36 1 3.3116 5.0464 -0.0001 37 1 2.2906 3.7026 -3.2615 38 1 2.8033 5.1563 -2.3715 39 1 2.9522 5.2057 -4.5040 40 1 4.3325 6.2376 -4.9594 41 1 3.3873 5.3069 -6.9976 42 1 3.4335 3.6617 -6.3164 43 1 5.7570 3.0616 -8.5025 44 1 4.5754 4.3842 -8.9045 45 1 7.1704 2.7282 -11.1993 46 1 5.3361 6.5841 -7.4695 47 1 6.8093 6.1054 -6.5170 48 1 7.2334 3.5364 -6.3225 49 1 5.7939 2.5750 -5.9021 50 1 6.7692 5.1213 -4.5287 51 1 6.7218 3.4788 -3.8381 52 1 2.0733 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035734371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:15 Heat of formation + Delta-G solvation = 14.134549 kcal Electronic energy + Delta-G solvation = -29763.807084 eV Core-core repulsion = 25921.455187 eV Total energy + Delta-G solvation = -3842.351897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.63586 -40.58805 -39.68551 -37.03702 -35.32521 -34.42009 -33.49266 -32.13679 -31.99577 -30.35239 -28.97786 -28.16699 -26.70909 -25.02579 -24.77343 -24.34167 -23.14511 -22.69268 -21.51855 -20.33925 -18.88421 -18.69548 -17.89254 -17.43405 -16.89832 -16.79224 -16.74396 -16.11196 -16.01684 -15.78044 -15.57959 -15.09456 -14.78266 -14.75015 -14.54495 -14.30482 -14.06458 -13.95938 -13.84881 -13.65739 -13.51921 -13.11632 -12.93874 -12.90655 -12.85043 -12.78073 -12.64775 -12.54517 -12.16362 -12.14090 -12.05574 -11.67346 -11.65886 -11.60190 -11.52214 -11.18450 -11.02465 -10.81726 -10.74311 -9.63836 -9.55700 -9.44978 -8.86719 -7.89166 -5.20833 0.46668 0.55366 1.43564 1.44200 1.54262 1.68583 2.08766 2.47479 2.90437 3.31774 3.43563 3.63745 3.67760 3.75808 3.86487 3.99329 4.03078 4.08918 4.22274 4.26664 4.31054 4.32606 4.41479 4.46632 4.52286 4.59663 4.62678 4.68763 4.72294 4.72837 4.77957 4.82030 4.84225 4.91920 4.96472 5.04450 5.07758 5.10654 5.15919 5.23113 5.23604 5.26223 5.30502 5.37278 5.40019 5.56885 5.61394 5.62315 5.70858 5.77194 5.78559 5.97988 6.18358 6.51314 6.94787 7.23760 7.63642 8.60895 9.27797 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023412 B = 0.002067 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.695325 B =13542.055494 C =13912.740190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.095 4.095 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.606 5.606 12 C 0.110 3.890 13 C -0.114 4.114 14 C -0.081 4.081 15 C 0.167 3.833 16 N -0.641 5.641 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.130 3.870 26 C -0.088 4.088 27 C 0.125 3.875 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.246 0.754 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 1.279 23.336 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.134 4.134 9 C 0.303 3.697 10 O -0.465 6.465 11 N -0.338 5.338 12 C -0.011 4.011 13 C -0.153 4.153 14 C -0.082 4.082 15 C 0.042 3.958 16 N -0.367 5.367 17 C -0.355 4.355 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.005 3.995 26 C -0.127 4.127 27 C 0.002 3.998 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.760 0.896 23.438 28.258 hybrid contribution 1.270 -0.252 -1.506 1.986 sum -14.490 0.644 21.931 26.294 Atomic orbital electron populations 1.21710 0.93736 1.02358 1.02064 1.20581 0.96951 0.91743 1.03073 1.20118 0.98980 0.96971 0.93156 1.21268 1.00317 0.95263 0.97990 1.21373 0.99140 0.95190 0.98554 1.21216 1.00119 1.00781 0.92229 1.19508 0.98850 0.94611 0.94503 1.20784 0.92449 1.04221 0.95987 1.21133 0.90447 0.78135 0.79997 1.90689 1.59711 1.40943 1.55144 1.48206 1.12411 1.51119 1.22084 1.21917 0.95385 0.94438 0.89406 1.21731 0.94400 1.02382 0.96780 1.22090 0.95782 0.96093 0.94284 1.22182 0.88275 0.93967 0.91376 1.46361 1.24840 1.32081 1.33454 1.19434 1.00241 1.09499 1.06341 0.90114 1.25578 1.01816 0.98140 1.00842 1.70018 1.39173 1.18196 1.33020 0.85070 0.78912 0.77380 0.78370 1.18939 1.22183 1.22054 1.22783 0.95114 0.94003 0.87569 1.21326 0.99502 0.97856 0.93976 1.21380 0.83166 1.01021 0.94238 1.21044 1.00425 0.94394 0.98116 0.92919 0.91348 0.92389 0.91434 0.90354 0.84665 0.84285 0.85182 0.85736 0.84974 0.86076 0.89674 0.89099 0.91347 0.95087 0.96470 0.94505 0.92975 0.93355 0.93052 0.92970 0.90773 0.90832 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -0.99 16 2 C -0.09 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.76 5.13 -19.87 -0.10 -1.86 16 4 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 5 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 6 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 7 C -0.07 -1.50 4.37 -19.87 -0.09 -1.59 16 8 C -0.10 -1.54 4.17 29.10 0.12 -1.42 16 9 C 0.51 12.78 7.69 87.66 0.67 13.46 16 10 O -0.58 -20.10 15.42 -3.02 -0.05 -20.14 16 11 N -0.61 -14.31 2.95 -819.58 -2.42 -16.73 16 12 C 0.11 1.89 6.19 86.26 0.53 2.43 16 13 C -0.11 -2.66 5.24 30.44 0.16 -2.50 16 14 C -0.08 -2.76 0.77 -52.03 -0.04 -2.80 16 15 C 0.17 7.81 6.64 86.32 0.57 8.38 16 16 N -0.64 -32.38 3.53 -722.61 -2.55 -34.93 16 17 C -0.23 -12.76 10.70 84.03 0.90 -11.86 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.95 -58.53 11.39 21.65 0.25 -58.29 16 21 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 C 0.13 4.84 7.73 86.32 0.67 5.51 16 26 C -0.09 -3.05 5.21 30.58 0.16 -2.90 16 27 C 0.12 3.63 6.30 86.40 0.54 4.17 16 28 C -0.12 -2.54 9.36 22.27 0.21 -2.33 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.12 1.47 7.65 -2.39 -0.02 1.45 16 38 H 0.13 1.32 7.85 -2.39 -0.02 1.31 16 39 H 0.12 1.17 5.89 -2.38 -0.01 1.16 16 40 H 0.09 1.32 8.07 -2.39 -0.02 1.30 16 41 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.03 1.68 7.12 -2.39 -0.02 1.66 16 44 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.05 1.77 8.07 -2.39 -0.02 1.76 16 47 H 0.05 1.73 7.41 -2.39 -0.02 1.71 16 48 H 0.05 2.12 8.01 -2.38 -0.02 2.11 16 49 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.07 2.05 7.49 -2.39 -0.02 2.03 16 51 H 0.07 2.36 6.98 -2.39 -0.02 2.35 16 52 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -76.16 410.59 4.47 -71.69 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.88 Total: 15.15 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.33 Total: -5.33 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.72 Total: -109.95 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.16 4.47 -71.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035734371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.828 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds