Wall clock time and date at job start Wed Apr 1 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 119.99997 * 2 1 4 4 C 1.38209 * 120.00177 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99888 * 359.80278 * 4 3 2 6 6 C 1.50700 * 120.00198 * 180.23332 * 5 4 3 7 7 C 1.38210 * 119.99861 * 0.42643 * 5 4 3 8 8 C 1.50704 * 120.00109 * 179.80799 * 7 5 4 9 9 C 1.50698 * 109.47243 * 84.72575 * 8 7 5 10 10 O 1.21288 * 119.99839 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00228 * 179.72603 * 9 8 7 12 12 C 1.46881 * 120.46502 * 359.97438 * 11 9 8 13 13 C 1.52858 * 109.01819 * 235.48705 * 12 11 9 14 14 C 1.52668 * 109.17419 * 307.81900 * 13 12 11 15 15 C 1.53488 * 113.62415 * 188.99658 * 14 13 12 16 16 N 1.47667 * 85.98910 * 137.70114 * 15 14 13 17 17 C 1.36939 * 134.45682 * 155.71356 * 16 15 14 18 18 H 1.07998 * 120.00231 * 187.03494 * 17 16 15 19 19 C 1.38817 * 119.99656 * 7.03449 * 17 16 15 20 20 N 1.31621 * 120.00180 * 7.59181 * 19 17 16 21 21 Si 1.86799 * 119.99614 * 187.58949 * 19 17 16 22 22 H 1.48504 * 109.47162 * 94.81984 * 21 19 17 23 23 H 1.48502 * 109.47052 * 214.81480 * 21 19 17 24 24 H 1.48498 * 109.47335 * 334.81290 * 21 19 17 25 25 C 1.47660 * 91.08838 * 335.68142 * 16 15 14 26 26 C 1.52672 * 113.19006 * 57.45930 * 14 13 12 27 27 C 1.46882 * 120.46610 * 180.27251 * 11 9 8 28 28 C 1.38208 * 119.99977 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47819 * 270.02750 * 1 2 3 30 30 H 1.08999 * 109.47419 * 30.03051 * 1 2 3 31 31 H 1.09011 * 109.46968 * 150.02500 * 1 2 3 32 32 H 1.08001 * 120.00251 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.00704 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47089 * 270.19194 * 6 5 4 35 35 H 1.08998 * 109.47090 * 30.19033 * 6 5 4 36 36 H 1.08995 * 109.47283 * 150.18634 * 6 5 4 37 37 H 1.09002 * 109.47055 * 324.72414 * 8 7 5 38 38 H 1.08997 * 109.47030 * 204.72424 * 8 7 5 39 39 H 1.09004 * 109.58909 * 355.31322 * 12 11 9 40 40 H 1.08999 * 109.59381 * 115.74482 * 12 11 9 41 41 H 1.09005 * 109.61052 * 187.84146 * 13 12 11 42 42 H 1.09004 * 109.38920 * 67.65999 * 13 12 11 43 43 H 1.08997 * 113.79172 * 251.97340 * 15 14 13 44 44 H 1.09004 * 113.78819 * 23.43539 * 15 14 13 45 45 H 0.97003 * 119.99749 * 180.02562 * 20 19 17 46 46 H 1.09002 * 113.79193 * 270.05007 * 25 16 15 47 47 H 1.08997 * 113.79448 * 138.57725 * 25 16 15 48 48 H 1.08997 * 109.53448 * 182.51923 * 26 14 13 49 49 H 1.08999 * 109.52633 * 62.29453 * 26 14 13 50 50 H 1.08998 * 109.59021 * 244.25569 * 27 11 9 51 51 H 1.08998 * 109.58988 * 4.69541 * 27 11 9 52 52 H 1.08003 * 120.00405 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0000 0.0052 6 6 5.7786 0.0000 0.0111 7 6 3.5806 -1.1970 0.0004 8 6 4.3341 -2.5021 0.0011 9 6 4.6928 -2.8743 1.4167 10 8 4.3681 -2.1512 2.3347 11 7 5.3691 -4.0137 1.6631 12 6 5.7612 -4.9005 0.5598 13 6 5.2125 -6.3017 0.8280 14 6 5.6307 -6.7446 2.2278 15 6 5.3228 -8.2188 2.5242 16 7 6.6572 -8.2631 3.1551 17 6 7.2382 -9.0467 4.1161 18 1 8.2202 -8.8009 4.4924 19 6 6.5648 -10.1571 4.6067 20 7 5.4381 -10.5439 4.0469 21 14 7.2578 -11.1022 6.0613 22 1 6.6350 -10.6072 7.3153 23 1 6.9613 -12.5482 5.8987 24 1 8.7279 -10.9026 6.1263 25 6 7.1144 -7.1244 2.3337 26 6 5.1650 -5.7900 3.3246 27 6 5.7188 -4.3893 3.0393 28 6 2.1980 -1.1969 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6583 2.1327 -0.0004 33 1 4.1204 2.1326 0.0010 34 1 6.1460 0.0017 -1.0151 35 1 6.1400 0.8891 0.5278 36 1 6.1400 -0.8908 0.5249 37 1 5.2447 -2.3963 -0.5886 38 1 3.7091 -3.2827 -0.4325 39 1 5.3510 -4.5222 -0.3766 40 1 6.8484 -4.9434 0.4940 41 1 5.6119 -6.9983 0.0908 42 1 4.1246 -6.2832 0.7614 43 1 4.5003 -8.3640 3.2245 44 1 5.2378 -8.8383 1.6314 45 1 4.9675 -11.3196 4.3901 46 1 7.5617 -7.4186 1.3842 47 1 7.7156 -6.3996 2.8825 48 1 5.5322 -6.1375 4.2902 49 1 4.0757 -5.7550 3.3388 50 1 6.8029 -4.3953 3.1523 51 1 5.2806 -3.6745 3.7358 52 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035781268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:05 Heat of formation + Delta-G solvation = 13.745694 kcal Electronic energy + Delta-G solvation = -30146.103334 eV Core-core repulsion = 26303.734574 eV Total energy + Delta-G solvation = -3842.368759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.69486 -40.71240 -39.67315 -37.03004 -35.11380 -34.42284 -33.43240 -32.14770 -32.00325 -30.10287 -29.11284 -28.28975 -26.73993 -25.63600 -25.01055 -24.35168 -23.20718 -22.76236 -21.43078 -20.25368 -18.88377 -18.68577 -17.91524 -17.05858 -16.97947 -16.85676 -16.52926 -16.13332 -15.99372 -15.68289 -15.46118 -15.09983 -14.98643 -14.57864 -14.42941 -14.08776 -14.02003 -13.90538 -13.71298 -13.67791 -13.51566 -13.44705 -13.13400 -12.90881 -12.85364 -12.80121 -12.70959 -12.66522 -12.32629 -12.17414 -12.11448 -11.79183 -11.75923 -11.68688 -11.49949 -11.19064 -11.03531 -10.78530 -10.74232 -9.63425 -9.55650 -9.21947 -8.88223 -7.91999 -5.22033 0.45198 0.53276 1.43231 1.45022 1.53524 1.68055 2.08332 2.47406 2.85892 3.30962 3.42100 3.62386 3.66348 3.75417 3.91370 3.98835 4.05062 4.08684 4.16969 4.22132 4.31866 4.34705 4.38987 4.45921 4.55630 4.61242 4.69488 4.71961 4.74412 4.78319 4.82490 4.83637 4.84843 4.88853 4.93198 4.93635 4.98054 5.06768 5.14328 5.15032 5.22594 5.25909 5.27445 5.36397 5.41090 5.55091 5.57884 5.60242 5.73804 5.76920 5.78033 5.95211 6.19775 6.50811 6.93319 7.23896 7.62467 8.60634 9.26394 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.002184 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.471326 B =12819.158052 C =13159.212179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.129 4.129 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.077 4.077 8 C -0.097 4.097 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.606 5.606 12 C 0.110 3.890 13 C -0.114 4.114 14 C -0.081 4.081 15 C 0.176 3.824 16 N -0.640 5.640 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.974 3.026 22 H -0.290 1.290 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.129 3.871 26 C -0.090 4.090 27 C 0.125 3.875 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.247 0.753 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 23.321 -15.371 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.147 4.147 5 C -0.091 4.091 6 C -0.169 4.169 7 C -0.077 4.077 8 C -0.136 4.136 9 C 0.305 3.695 10 O -0.461 6.461 11 N -0.338 5.338 12 C -0.012 4.012 13 C -0.153 4.153 14 C -0.082 4.082 15 C 0.050 3.950 16 N -0.366 5.366 17 C -0.358 4.358 18 H 0.099 0.901 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.005 3.995 26 C -0.128 4.128 27 C 0.002 3.998 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.200 23.439 -14.677 27.972 hybrid contribution 0.121 -1.423 1.337 1.956 sum -4.079 22.016 -13.340 26.063 Atomic orbital electron populations 1.20798 0.89849 1.03607 1.02521 1.20174 0.97272 0.93119 1.00140 1.21274 0.94400 0.98121 1.00810 1.21248 0.94569 0.97923 1.00939 1.19989 0.96907 0.92829 0.99414 1.20814 0.90382 1.02659 1.03041 1.19368 0.93614 0.93953 1.00810 1.20782 1.03313 0.96286 0.93219 1.21032 0.76475 0.80059 0.91949 1.90693 1.55070 1.52391 1.47976 1.48197 1.55880 1.21762 1.07989 1.21906 1.01338 0.88469 0.89438 1.21728 1.01555 0.97068 0.94938 1.22086 0.96158 0.94155 0.95798 1.22044 0.88077 0.91507 0.93360 1.46454 1.11819 1.36975 1.41368 1.19413 1.00975 1.04121 1.11261 0.90092 1.25608 0.98671 0.99058 1.02915 1.70020 1.19150 1.27785 1.43459 0.85127 0.78219 0.77299 0.79131 1.21720 1.22222 1.19073 1.22779 0.94697 0.88363 0.93694 1.21352 0.99673 0.93836 0.97944 1.21389 1.00044 0.94824 0.83532 1.21096 0.93674 0.98305 1.00933 0.91390 0.90291 0.90969 0.84484 0.84583 0.89162 0.91286 0.92624 0.85316 0.85862 0.86253 0.89630 0.89228 0.91308 0.96319 0.96357 0.94430 0.93313 0.93128 0.92760 0.92840 0.90694 0.90724 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.23 0.71 -0.84 16 2 C -0.11 -2.06 5.88 -19.87 -0.12 -2.18 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 4 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 5 C -0.09 -1.84 5.88 -19.86 -0.12 -1.96 16 6 C -0.11 -1.80 9.22 71.24 0.66 -1.14 16 7 C -0.08 -1.61 4.37 -19.86 -0.09 -1.69 16 8 C -0.10 -1.63 3.48 29.10 0.10 -1.53 16 9 C 0.52 12.75 6.89 87.66 0.60 13.36 16 10 O -0.58 -19.72 15.42 -3.05 -0.05 -19.77 16 11 N -0.61 -14.13 2.95 -819.59 -2.42 -16.55 16 12 C 0.11 1.90 6.19 86.26 0.53 2.43 16 13 C -0.11 -2.67 5.24 30.44 0.16 -2.51 16 14 C -0.08 -2.72 0.77 -52.03 -0.04 -2.76 16 15 C 0.18 8.19 6.43 86.31 0.56 8.75 16 16 N -0.64 -32.33 3.52 -722.59 -2.54 -34.88 16 17 C -0.23 -12.90 10.69 84.03 0.90 -12.00 16 18 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 20 N -0.95 -58.69 11.77 21.65 0.25 -58.44 16 21 Si 0.97 46.50 29.56 68.60 2.03 48.53 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C 0.13 4.82 7.72 86.33 0.67 5.49 16 26 C -0.09 -3.03 5.21 30.58 0.16 -2.87 16 27 C 0.12 3.54 6.30 86.41 0.54 4.08 16 28 C -0.12 -2.56 9.34 22.27 0.21 -2.35 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.05 1.00 6.15 -2.39 -0.01 0.98 16 37 H 0.13 1.46 6.78 -2.39 -0.02 1.44 16 38 H 0.12 1.53 7.62 -2.39 -0.02 1.52 16 39 H 0.12 1.20 5.88 -2.39 -0.01 1.19 16 40 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 41 H 0.09 1.94 8.12 -2.38 -0.02 1.92 16 42 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.02 0.99 7.66 -2.39 -0.02 0.97 16 44 H 0.02 0.90 8.09 -2.39 -0.02 0.88 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.05 1.69 8.07 -2.39 -0.02 1.67 16 47 H 0.05 1.79 7.41 -2.39 -0.02 1.77 16 48 H 0.05 2.16 8.01 -2.39 -0.02 2.14 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 51 H 0.07 2.34 6.97 -2.39 -0.02 2.32 16 52 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -76.39 406.55 4.51 -71.88 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.89 Total: 14.82 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 6.34 Total: -5.60 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.70 Total: -109.86 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.39 4.51 -71.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035781268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.627 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds