Wall clock time and date at job start Wed Apr 1 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38235 * 120.00220 * 0.28719 * 5 4 3 7 7 C 1.50700 * 120.00255 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47288 * 89.99435 * 7 6 5 9 9 O 1.21279 * 119.99935 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99582 * 179.97438 * 8 7 6 11 11 C 1.46881 * 120.46625 * 359.72669 * 10 8 7 12 12 C 1.52855 * 109.01700 * 235.48477 * 11 10 8 13 13 C 1.52670 * 109.17447 * 307.82063 * 12 11 10 14 14 C 1.53487 * 113.62461 * 188.99632 * 13 12 11 15 15 N 1.47670 * 85.98938 * 137.70768 * 14 13 12 16 16 C 1.36937 * 134.45712 * 155.71852 * 15 14 13 17 17 H 1.07995 * 119.99518 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99740 * 359.95027 * 16 15 14 19 19 N 1.31617 * 120.00388 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99762 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47080 * 60.00067 * 20 18 16 22 22 H 1.48500 * 109.47241 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47053 * 300.00180 * 20 18 16 24 24 C 1.47668 * 91.08513 * 335.68252 * 15 14 13 25 25 C 1.52679 * 113.18824 * 57.46320 * 13 12 11 26 26 C 1.46883 * 120.46104 * 179.97438 * 10 8 7 27 27 C 1.38237 * 119.99712 * 359.94731 * 6 5 4 28 28 C 1.38234 * 120.00033 * 0.02562 * 27 6 5 29 29 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 30 30 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 32 32 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 33 33 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 34 34 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00009 * 180.25939 * 5 4 3 36 36 H 1.09005 * 109.47111 * 209.99797 * 7 6 5 37 37 H 1.09002 * 109.46493 * 329.99148 * 7 6 5 38 38 H 1.09001 * 109.58911 * 355.31303 * 11 10 8 39 39 H 1.09007 * 109.58666 * 115.74289 * 11 10 8 40 40 H 1.09000 * 109.60885 * 187.84447 * 12 11 10 41 41 H 1.08992 * 109.38778 * 67.66257 * 12 11 10 42 42 H 1.09000 * 113.78727 * 251.97305 * 14 13 12 43 43 H 1.08998 * 113.79057 * 23.43698 * 14 13 12 44 44 H 0.97001 * 120.00117 * 180.02562 * 19 18 16 45 45 H 1.09007 * 113.79135 * 270.04782 * 24 15 14 46 46 H 1.08998 * 113.79020 * 138.58085 * 24 15 14 47 47 H 1.08997 * 109.53185 * 182.51883 * 25 13 12 48 48 H 1.08997 * 109.53181 * 62.29432 * 25 13 12 49 49 H 1.08998 * 109.59154 * 244.25985 * 26 10 8 50 50 H 1.09001 * 109.58903 * 4.69551 * 26 10 8 51 51 H 1.08001 * 119.99643 * 180.02562 * 27 6 5 52 52 H 1.08003 * 119.99512 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9592 4.0255 -0.0001 7 6 3.4669 5.4444 -0.0001 8 6 4.9739 5.4387 -0.0032 9 8 5.5763 4.3861 -0.0057 10 7 5.6521 6.6035 -0.0043 11 6 4.9328 7.8841 -0.0085 12 6 5.4053 8.7168 -1.2001 13 6 6.9295 8.8016 -1.1797 14 6 7.5041 9.7922 -2.2017 15 7 8.4251 10.2085 -1.1251 16 6 9.6618 10.7957 -1.0946 17 1 10.1376 11.0035 -0.1477 18 6 10.3040 11.1232 -2.2809 19 7 9.7240 10.8699 -3.4349 20 14 11.9908 11.9249 -2.2393 21 1 12.9495 11.0252 -1.5489 22 1 12.4555 12.1725 -3.6278 23 1 11.9079 13.2147 -1.5081 24 6 7.4776 9.7388 -0.0945 25 6 7.6080 7.4341 -1.2050 26 6 7.1209 6.6099 -0.0068 27 6 2.7242 3.3754 -1.1972 28 6 2.2585 2.0739 -1.1972 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.0829 1.5633 2.1325 35 1 2.9128 3.8815 2.1324 36 1 3.1036 5.9603 -0.8890 37 1 3.1072 5.9589 0.8910 38 1 3.8616 7.7013 -0.0943 39 1 5.1408 8.4231 0.9158 40 1 4.9836 9.7199 -1.1356 41 1 5.0790 8.2421 -2.1254 42 1 8.0017 9.3142 -3.0455 43 1 6.8017 10.5688 -2.5043 44 1 10.1729 11.0985 -4.2638 45 1 6.7672 10.4996 0.2292 46 1 7.9540 9.2184 0.7363 47 1 8.6887 7.5623 -1.1438 48 1 7.3531 6.9179 -2.1305 49 1 7.4860 7.0574 0.9176 50 1 7.4906 5.5880 -0.0915 51 1 2.9046 3.8844 -2.1325 52 1 2.0754 1.5659 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035805855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:30 Heat of formation + Delta-G solvation = 31.570543 kcal Electronic energy + Delta-G solvation = -29569.031103 eV Core-core repulsion = 25727.435287 eV Total energy + Delta-G solvation = -3841.595816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49830 -39.57373 -38.51631 -35.73790 -34.83062 -32.54040 -31.85450 -31.04641 -30.80616 -30.30677 -27.56434 -26.63759 -25.02914 -23.87621 -23.48070 -22.87704 -22.74489 -21.31051 -20.73713 -19.38986 -17.67556 -16.76861 -16.69314 -16.46064 -16.01818 -15.66752 -15.16236 -14.99708 -14.83250 -14.62928 -14.03618 -13.97763 -13.78389 -13.71766 -13.59853 -13.51374 -13.17472 -13.03404 -12.50834 -12.35202 -12.25661 -12.20440 -11.96634 -11.86873 -11.67711 -11.44379 -11.11327 -11.04449 -11.00076 -10.99599 -10.84618 -10.81243 -10.37940 -10.14583 -9.80033 -9.69834 -9.52048 -9.34250 -9.01037 -8.77103 -8.63121 -8.40291 -6.84652 -5.74807 -3.06541 1.18005 1.31632 2.69962 3.08695 3.40097 3.44381 3.45479 3.65781 4.44426 4.47086 4.57607 4.61026 4.66663 4.80985 4.86987 4.93161 5.04587 5.05942 5.13117 5.22127 5.24285 5.27452 5.33600 5.36669 5.37418 5.45817 5.50345 5.55309 5.58663 5.66848 5.70760 5.82305 5.88221 5.91680 5.95519 5.96148 5.98043 6.19685 6.27266 6.29524 6.31788 6.45801 6.47031 6.48118 6.63447 6.65789 6.81847 6.88008 6.90012 7.24843 7.39022 7.52197 7.59971 8.00808 8.26645 9.06936 9.73172 10.63428 11.42097 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.033393 B = 0.001890 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.308097 B =14815.112405 C =14905.903145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.109 3.891 12 C -0.119 4.119 13 C -0.108 4.108 14 C 0.173 3.827 15 N -0.609 5.609 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.126 3.874 25 C -0.096 4.096 26 C 0.114 3.886 27 C -0.101 4.101 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.024 0.976 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.333 -16.211 7.503 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.142 4.142 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.158 4.158 13 C -0.110 4.110 14 C 0.048 3.952 15 N -0.335 5.335 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.000 4.000 25 C -0.134 4.134 26 C -0.008 4.008 27 C -0.119 4.119 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.105 0.895 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.691 -16.620 7.360 26.798 hybrid contribution 0.972 0.919 -0.086 1.340 sum -18.720 -15.701 7.274 25.492 Atomic orbital electron populations 1.21747 0.94805 1.01572 1.02196 1.20535 0.96072 0.92838 1.02797 1.19859 0.99397 0.96055 0.93271 1.20930 1.00448 0.94785 0.97416 1.20937 0.98855 0.94911 0.97329 1.19294 0.99009 0.94801 0.93577 1.20720 0.93028 0.95428 1.05047 1.20459 0.89499 0.83480 0.76355 1.90703 1.70361 1.30711 1.49846 1.48144 1.07393 1.05685 1.72763 1.21701 0.95843 0.84133 0.99755 1.21751 0.96849 0.99746 0.97495 1.22387 0.92182 0.95456 1.00949 1.22235 0.89247 0.91180 0.92578 1.45945 1.14249 1.71842 1.01433 1.18960 0.90726 1.32533 0.92759 0.90488 1.24752 0.98722 1.01720 0.95205 1.69803 1.38046 1.52571 0.96455 0.86240 0.83918 0.79268 0.76566 1.21122 1.21603 1.21284 1.22589 0.91380 0.93235 0.92761 1.21490 1.01434 0.93564 0.96908 1.21689 0.78361 1.01655 0.99127 1.20968 0.98616 0.94910 0.97426 1.20947 1.00326 0.94771 0.97452 0.92559 0.92518 0.92597 0.91104 0.91140 0.86325 0.86338 0.87962 0.88118 0.90295 0.91150 0.90629 0.91812 0.91022 0.95787 0.93664 0.95193 0.94199 0.89534 0.92192 0.91547 0.89465 0.86221 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.09 -0.61 6.06 -27.89 -0.17 -0.78 16 3 C -0.09 -0.82 5.13 -104.63 -0.54 -1.36 16 4 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 5 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 6 C -0.07 -0.73 4.37 -104.62 -0.46 -1.19 16 7 C -0.10 -1.00 4.17 -29.04 -0.12 -1.12 16 8 C 0.51 6.99 7.69 -10.98 -0.08 6.90 16 9 O -0.54 -9.44 15.42 5.56 0.09 -9.36 16 10 N -0.61 -7.98 2.95 -172.93 -0.51 -8.49 16 11 C 0.11 1.18 6.19 -3.91 -0.02 1.15 16 12 C -0.12 -1.58 5.24 -26.97 -0.14 -1.72 16 13 C -0.11 -1.89 0.77 -154.42 -0.12 -2.01 16 14 C 0.17 3.94 6.64 -3.16 -0.02 3.91 16 15 N -0.61 -15.19 3.53 -179.74 -0.64 -15.82 16 16 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.20 11.39 55.49 0.63 -26.57 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.13 2.45 7.72 -3.14 -0.02 2.43 16 25 C -0.10 -1.64 5.22 -26.70 -0.14 -1.78 16 26 C 0.11 1.70 6.30 -3.64 -0.02 1.68 16 27 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 28 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.10 0.82 7.65 -51.93 -0.40 0.43 16 37 H 0.10 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.08 0.63 5.89 -51.93 -0.31 0.32 16 39 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 43 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.03 0.56 8.07 -51.92 -0.42 0.14 16 46 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 47 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 50 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 51 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 52 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -33.29 410.60 -11.45 -44.75 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.90 Total: -0.76 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.29 Total: -7.08 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.51 Total: -50.88 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.29 -11.45 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035805855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.318 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds