Wall clock time and date at job start Wed Apr 1 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 C 1.50706 * 109.47257 * 120.00040 * 2 1 3 5 5 O 1.21281 * 119.99886 * 246.66191 * 4 2 1 6 6 N 1.34776 * 119.99696 * 66.66187 * 4 2 1 7 7 C 1.46894 * 120.45654 * 176.63559 * 6 4 2 8 8 C 1.53357 * 108.74021 * 124.34422 * 7 6 4 9 9 C 1.52552 * 109.12871 * 52.25359 * 8 7 6 10 10 C 1.52968 * 114.06016 * 75.54671 * 9 8 7 11 11 N 1.47170 * 87.85218 * 139.43818 * 10 9 8 12 12 C 1.36934 * 135.99782 * 153.33518 * 11 10 9 13 13 H 1.07992 * 120.00444 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99814 * 179.97438 * 12 11 10 15 15 N 1.31623 * 119.99843 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00092 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47275 * 90.00165 * 16 14 12 18 18 H 1.48507 * 109.47364 * 210.00021 * 16 14 12 19 19 H 1.48504 * 109.47383 * 330.00035 * 16 14 12 20 20 C 1.47161 * 87.99667 * 333.33498 * 11 10 9 21 21 C 1.52548 * 113.43339 * 302.67196 * 9 8 7 22 22 C 1.46883 * 120.46511 * 356.60843 * 6 4 2 23 23 C 1.50696 * 109.47483 * 240.00318 * 2 1 3 24 24 C 1.38238 * 120.00179 * 229.01643 * 23 2 1 25 25 C 1.38236 * 119.99972 * 179.76052 * 24 23 2 26 26 C 1.38233 * 120.00201 * 0.51059 * 25 24 23 27 27 C 1.38239 * 119.99838 * 359.73983 * 26 25 24 28 28 C 1.38232 * 120.00102 * 49.28277 * 23 2 1 29 29 H 1.08991 * 109.47625 * 310.05819 * 1 2 3 30 30 H 1.08998 * 109.46915 * 70.06572 * 1 2 3 31 31 H 1.09009 * 109.46810 * 190.06068 * 1 2 3 32 32 H 1.08998 * 109.46964 * 176.56914 * 3 2 1 33 33 H 1.08996 * 109.47337 * 296.56712 * 3 2 1 34 34 H 1.09004 * 109.47166 * 56.56806 * 3 2 1 35 35 H 1.08994 * 109.59437 * 4.56182 * 7 6 4 36 36 H 1.09011 * 109.58575 * 244.11550 * 7 6 4 37 37 H 1.09000 * 109.52401 * 292.35945 * 8 7 6 38 38 H 1.09000 * 109.52502 * 172.15154 * 8 7 6 39 39 H 1.08997 * 113.49023 * 24.68898 * 10 9 8 40 40 H 1.09003 * 113.48196 * 254.18086 * 10 9 8 41 41 H 0.97006 * 119.99749 * 180.02562 * 15 14 12 42 42 H 1.09004 * 113.49240 * 141.41814 * 20 11 10 43 43 H 1.09001 * 113.49060 * 271.92002 * 20 11 10 44 44 H 1.09002 * 109.52682 * 177.21981 * 21 9 8 45 45 H 1.09004 * 109.52493 * 297.41872 * 21 9 8 46 46 H 1.09000 * 109.59460 * 355.42991 * 22 6 4 47 47 H 1.09002 * 109.58985 * 115.87320 * 22 6 4 48 48 H 1.08005 * 120.00021 * 359.97438 * 24 23 2 49 49 H 1.08007 * 119.99591 * 180.22623 * 25 24 23 50 50 H 1.07997 * 120.00409 * 179.72464 * 26 25 24 51 51 H 1.07993 * 119.99953 * 179.97438 * 27 26 25 52 52 H 1.08002 * 120.00161 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6268 -0.0917 2.0877 6 7 1.8210 -2.0333 1.3783 7 6 2.3696 -2.7501 2.5372 8 6 1.2218 -3.4593 3.2663 9 6 0.4357 -4.2985 2.2640 10 6 1.1376 -5.5923 1.8475 11 7 -0.1724 -6.2596 1.9152 12 6 -0.7565 -7.3456 1.3199 13 1 -0.2018 -7.9313 0.6020 14 6 -2.0618 -7.6937 1.6394 15 7 -2.7380 -6.9796 2.5141 16 14 -2.8584 -9.1757 0.8279 17 1 -2.5983 -10.3875 1.6460 18 1 -4.3232 -8.9546 0.7226 19 1 -2.2873 -9.3632 -0.5300 20 6 -0.5790 -5.2476 2.9033 21 6 -0.1186 -3.4878 1.0967 22 6 1.0385 -2.7782 0.3831 23 6 2.0324 -0.7103 -1.2304 24 6 3.0030 -1.6879 -1.1163 25 6 3.4603 -2.3429 -2.2445 26 6 2.9546 -2.0130 -3.4880 27 6 1.9876 -1.0318 -3.6027 28 6 1.5266 -0.3804 -2.4739 29 1 -0.3634 0.6613 0.7865 30 1 -0.3633 0.3504 -0.9661 31 1 -0.3633 -1.0120 0.1795 32 1 3.1282 1.4431 0.0615 33 1 1.7277 1.9383 -0.9191 34 1 1.6272 1.9738 0.8577 35 1 2.8487 -2.0410 3.2122 36 1 3.0987 -3.4867 2.1996 37 1 0.5626 -2.7171 3.7166 38 1 1.6286 -4.1062 4.0436 39 1 1.8500 -5.9575 2.5872 40 1 1.5549 -5.5555 0.8412 41 1 -3.6500 -7.2231 2.7376 42 1 -1.6123 -4.9197 2.7894 43 1 -0.3329 -5.5192 3.9298 44 1 -0.6240 -4.1542 0.3976 45 1 -0.8253 -2.7469 1.4707 46 1 0.6409 -2.0877 -0.3606 47 1 1.6752 -3.5167 -0.1041 48 1 3.4017 -1.9424 -0.1453 49 1 4.2161 -3.1093 -2.1548 50 1 3.3150 -2.5216 -4.3698 51 1 1.5928 -0.7737 -4.5742 52 1 0.7716 0.3866 -2.5637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035849091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:44 Heat of formation + Delta-G solvation = 60.510083 kcal Electronic energy + Delta-G solvation = -31920.431858 eV Core-core repulsion = 28080.090954 eV Total energy + Delta-G solvation = -3840.340903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.38788 -39.40127 -38.53659 -35.83960 -35.39029 -32.53484 -31.35723 -30.76100 -30.35137 -29.89096 -27.38224 -27.02053 -25.02772 -24.52975 -23.30669 -23.05252 -22.52689 -21.65296 -20.64703 -19.17376 -17.79204 -17.29001 -16.68547 -16.27031 -16.01812 -15.30308 -15.15158 -14.88856 -14.74470 -14.43725 -14.20251 -14.02190 -13.83005 -13.58456 -13.50159 -13.29361 -12.90721 -12.64252 -12.54003 -12.27293 -12.18650 -12.08524 -11.99761 -11.98855 -11.61126 -11.26621 -11.20446 -11.07384 -10.98039 -10.86903 -10.86112 -10.80027 -10.38196 -10.23157 -9.71579 -9.59125 -9.55990 -9.19084 -9.00965 -8.81247 -8.73954 -8.36967 -6.86009 -5.76532 -3.08299 1.18961 1.27879 2.64104 3.08011 3.38004 3.42973 3.44889 3.63261 4.30336 4.38922 4.45553 4.76937 4.86776 4.89937 4.93114 5.00631 5.04836 5.10675 5.17266 5.32683 5.38347 5.39583 5.40562 5.46066 5.51541 5.60197 5.63054 5.67113 5.70523 5.71918 5.83508 5.87631 5.89119 5.91352 6.01382 6.02918 6.11898 6.18912 6.30556 6.33999 6.36649 6.40267 6.42643 6.52087 6.61668 6.65926 6.81854 6.84747 6.86008 7.23202 7.37090 7.51112 7.57362 7.98269 8.22163 9.04233 9.70911 10.66245 11.40844 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003517 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.546345 B = 7959.842033 C = 8970.647532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.041 4.041 3 C -0.121 4.121 4 C 0.526 3.474 5 O -0.546 6.546 6 N -0.600 5.600 7 C 0.113 3.887 8 C -0.113 4.113 9 C -0.113 4.113 10 C 0.127 3.873 11 N -0.607 5.607 12 C -0.216 4.216 13 H 0.079 0.921 14 C -0.007 4.007 15 N -0.919 5.919 16 Si 0.909 3.091 17 H -0.290 1.290 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.166 3.834 21 C -0.095 4.095 22 C 0.097 3.903 23 C -0.074 4.074 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.112 4.112 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.253 0.747 42 H 0.069 0.931 43 H 0.023 0.977 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.126 0.874 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.950 15.537 -8.995 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.044 4.044 3 C -0.178 4.178 4 C 0.314 3.686 5 O -0.424 6.424 6 N -0.333 5.333 7 C -0.009 4.009 8 C -0.152 4.152 9 C -0.115 4.115 10 C 0.001 3.999 11 N -0.333 5.333 12 C -0.343 4.343 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.566 5.566 16 Si 0.740 3.260 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.041 3.959 21 C -0.134 4.134 22 C -0.025 4.025 23 C -0.074 4.074 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.137 4.137 28 C -0.130 4.130 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.144 0.856 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.985 15.592 -8.616 20.422 hybrid contribution -0.505 -1.202 -0.252 1.328 sum 9.480 14.390 -8.868 19.380 Atomic orbital electron populations 1.22241 0.91588 1.04136 1.03225 1.19752 0.97490 0.96456 0.90682 1.21656 1.01874 0.92256 1.02046 1.20324 0.79057 0.81775 0.87426 1.90661 1.42536 1.65575 1.43583 1.48144 1.52735 1.07629 1.24756 1.21640 0.96064 0.95657 0.87575 1.21716 0.96827 0.98842 0.97796 1.22054 0.99375 0.93814 0.96237 1.22392 0.90151 0.89729 0.97615 1.45573 1.09196 1.31784 1.46702 1.18914 0.95129 1.02614 1.17684 0.90312 1.24760 0.96827 0.99336 0.99446 1.69833 1.10709 1.40221 1.35884 0.86160 0.78676 0.82385 0.78792 1.21687 1.21649 1.20632 1.22037 0.97341 0.85215 0.91353 1.21456 0.96152 0.98308 0.97439 1.22359 0.93459 0.95814 0.90859 1.19520 0.97316 0.96869 0.93734 1.21353 0.96645 0.95796 0.99333 1.21136 1.00040 0.99716 0.92452 1.21165 0.97344 0.97791 0.97529 1.21100 0.97477 0.96746 0.98355 1.20920 1.00189 1.00204 0.91653 0.91462 0.91025 0.90336 0.91964 0.91960 0.91495 0.89460 0.91558 0.91834 0.90843 0.95302 0.94622 0.93722 0.91228 0.95949 0.89405 0.92167 0.88661 0.91125 0.85591 0.86026 0.86179 0.86060 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.98 37.16 0.30 -1.26 16 2 C -0.04 -0.45 0.60 -156.81 -0.09 -0.55 16 3 C -0.12 -1.25 7.69 37.16 0.29 -0.96 16 4 C 0.53 7.33 5.27 -10.98 -0.06 7.27 16 5 O -0.55 -9.17 15.40 5.56 0.09 -9.09 16 6 N -0.60 -8.06 1.88 -172.62 -0.32 -8.38 16 7 C 0.11 1.53 6.35 -3.64 -0.02 1.51 16 8 C -0.11 -1.68 5.30 -26.78 -0.14 -1.82 16 9 C -0.11 -2.00 0.84 -155.02 -0.13 -2.13 16 10 C 0.13 2.51 7.63 -8.20 -0.06 2.45 16 11 N -0.61 -15.12 3.55 -184.66 -0.66 -15.78 16 12 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 13 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 15 N -0.92 -26.98 11.51 55.49 0.64 -26.34 16 16 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.17 3.81 6.54 -8.22 -0.05 3.76 16 21 C -0.10 -1.55 5.06 -26.78 -0.14 -1.69 16 22 C 0.10 1.29 3.42 -3.65 -0.01 1.28 16 23 C -0.07 -0.79 2.99 -104.63 -0.31 -1.11 16 24 C -0.11 -1.29 6.57 -39.58 -0.26 -1.55 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.11 -1.05 8.78 -39.58 -0.35 -1.39 16 29 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.07 0.58 6.49 -51.93 -0.34 0.24 16 31 H 0.08 0.87 4.64 -51.92 -0.24 0.63 16 32 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.09 1.22 6.97 -51.93 -0.36 0.86 16 36 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.04 0.68 7.53 -51.93 -0.39 0.28 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.07 1.78 7.11 -51.93 -0.37 1.42 16 43 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.09 1.66 7.95 -51.93 -0.41 1.25 16 45 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 46 H 0.10 1.17 3.16 -51.93 -0.16 1.01 16 47 H 0.07 0.97 6.83 -51.93 -0.35 0.62 16 48 H 0.13 1.56 5.72 -52.48 -0.30 1.26 16 49 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 52 H 0.12 0.93 6.88 -52.49 -0.36 0.57 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -31.61 388.64 -10.21 -41.82 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.28 Total: 2.19 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.50 Total: -7.16 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.34 Total: -50.50 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.61 -10.21 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035849091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.325 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds