Wall clock time and date at job start Wed Apr 1 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 C 1.50706 * 109.47257 * 120.00040 * 2 1 3 5 5 O 1.21281 * 119.99886 * 246.66191 * 4 2 1 6 6 N 1.34776 * 119.99696 * 66.66187 * 4 2 1 7 7 C 1.46894 * 120.45654 * 176.63559 * 6 4 2 8 8 C 1.53357 * 108.74021 * 124.34422 * 7 6 4 9 9 C 1.52552 * 109.12871 * 52.25359 * 8 7 6 10 10 C 1.52968 * 114.06016 * 75.54671 * 9 8 7 11 11 N 1.47170 * 87.85218 * 139.43818 * 10 9 8 12 12 C 1.36934 * 135.99782 * 153.33518 * 11 10 9 13 13 H 1.07992 * 120.00444 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99814 * 179.97438 * 12 11 10 15 15 N 1.31623 * 119.99843 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00092 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47275 * 90.00165 * 16 14 12 18 18 H 1.48507 * 109.47364 * 210.00021 * 16 14 12 19 19 H 1.48504 * 109.47383 * 330.00035 * 16 14 12 20 20 C 1.47161 * 87.99667 * 333.33498 * 11 10 9 21 21 C 1.52548 * 113.43339 * 302.67196 * 9 8 7 22 22 C 1.46883 * 120.46511 * 356.60843 * 6 4 2 23 23 C 1.50696 * 109.47483 * 240.00318 * 2 1 3 24 24 C 1.38238 * 120.00179 * 229.01643 * 23 2 1 25 25 C 1.38236 * 119.99972 * 179.76052 * 24 23 2 26 26 C 1.38233 * 120.00201 * 0.51059 * 25 24 23 27 27 C 1.38239 * 119.99838 * 359.73983 * 26 25 24 28 28 C 1.38232 * 120.00102 * 49.28277 * 23 2 1 29 29 H 1.08991 * 109.47625 * 310.05819 * 1 2 3 30 30 H 1.08998 * 109.46915 * 70.06572 * 1 2 3 31 31 H 1.09009 * 109.46810 * 190.06068 * 1 2 3 32 32 H 1.08998 * 109.46964 * 176.56914 * 3 2 1 33 33 H 1.08996 * 109.47337 * 296.56712 * 3 2 1 34 34 H 1.09004 * 109.47166 * 56.56806 * 3 2 1 35 35 H 1.08994 * 109.59437 * 4.56182 * 7 6 4 36 36 H 1.09011 * 109.58575 * 244.11550 * 7 6 4 37 37 H 1.09000 * 109.52401 * 292.35945 * 8 7 6 38 38 H 1.09000 * 109.52502 * 172.15154 * 8 7 6 39 39 H 1.08997 * 113.49023 * 24.68898 * 10 9 8 40 40 H 1.09003 * 113.48196 * 254.18086 * 10 9 8 41 41 H 0.97006 * 119.99749 * 180.02562 * 15 14 12 42 42 H 1.09004 * 113.49240 * 141.41814 * 20 11 10 43 43 H 1.09001 * 113.49060 * 271.92002 * 20 11 10 44 44 H 1.09002 * 109.52682 * 177.21981 * 21 9 8 45 45 H 1.09004 * 109.52493 * 297.41872 * 21 9 8 46 46 H 1.09000 * 109.59460 * 355.42991 * 22 6 4 47 47 H 1.09002 * 109.58985 * 115.87320 * 22 6 4 48 48 H 1.08005 * 120.00021 * 359.97438 * 24 23 2 49 49 H 1.08007 * 119.99591 * 180.22623 * 25 24 23 50 50 H 1.07997 * 120.00409 * 179.72464 * 26 25 24 51 51 H 1.07993 * 119.99953 * 179.97438 * 27 26 25 52 52 H 1.08002 * 120.00161 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6268 -0.0917 2.0877 6 7 1.8210 -2.0333 1.3783 7 6 2.3696 -2.7501 2.5372 8 6 1.2218 -3.4593 3.2663 9 6 0.4357 -4.2985 2.2640 10 6 1.1376 -5.5923 1.8475 11 7 -0.1724 -6.2596 1.9152 12 6 -0.7565 -7.3456 1.3199 13 1 -0.2018 -7.9313 0.6020 14 6 -2.0618 -7.6937 1.6394 15 7 -2.7380 -6.9796 2.5141 16 14 -2.8584 -9.1757 0.8279 17 1 -2.5983 -10.3875 1.6460 18 1 -4.3232 -8.9546 0.7226 19 1 -2.2873 -9.3632 -0.5300 20 6 -0.5790 -5.2476 2.9033 21 6 -0.1186 -3.4878 1.0967 22 6 1.0385 -2.7782 0.3831 23 6 2.0324 -0.7103 -1.2304 24 6 3.0030 -1.6879 -1.1163 25 6 3.4603 -2.3429 -2.2445 26 6 2.9546 -2.0130 -3.4880 27 6 1.9876 -1.0318 -3.6027 28 6 1.5266 -0.3804 -2.4739 29 1 -0.3634 0.6613 0.7865 30 1 -0.3633 0.3504 -0.9661 31 1 -0.3633 -1.0120 0.1795 32 1 3.1282 1.4431 0.0615 33 1 1.7277 1.9383 -0.9191 34 1 1.6272 1.9738 0.8577 35 1 2.8487 -2.0410 3.2122 36 1 3.0987 -3.4867 2.1996 37 1 0.5626 -2.7171 3.7166 38 1 1.6286 -4.1062 4.0436 39 1 1.8500 -5.9575 2.5872 40 1 1.5549 -5.5555 0.8412 41 1 -3.6500 -7.2231 2.7376 42 1 -1.6123 -4.9197 2.7894 43 1 -0.3329 -5.5192 3.9298 44 1 -0.6240 -4.1542 0.3976 45 1 -0.8253 -2.7469 1.4707 46 1 0.6409 -2.0877 -0.3606 47 1 1.6752 -3.5167 -0.1041 48 1 3.4017 -1.9424 -0.1453 49 1 4.2161 -3.1093 -2.1548 50 1 3.3150 -2.5216 -4.3698 51 1 1.5928 -0.7737 -4.5742 52 1 0.7716 0.3866 -2.5637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035849091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:41 Heat of formation + Delta-G solvation = 44.854116 kcal Electronic energy + Delta-G solvation = -31921.110751 eV Core-core repulsion = 28080.090954 eV Total energy + Delta-G solvation = -3841.019797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.42977 -40.78399 -39.54819 -37.19176 -36.27590 -34.42747 -32.51147 -31.92694 -31.58986 -30.64592 -28.81008 -28.19320 -26.64263 -25.86175 -24.56801 -24.18633 -23.37542 -23.02267 -21.80787 -20.34253 -18.78582 -18.69229 -18.44025 -17.35996 -17.01541 -16.85199 -16.28827 -16.13867 -15.94740 -15.65961 -15.48436 -15.27179 -14.94584 -14.75992 -14.53938 -14.28431 -14.12709 -14.02730 -13.67672 -13.54808 -13.26090 -13.11419 -13.04462 -12.90741 -12.86850 -12.79301 -12.75701 -12.59360 -12.17455 -12.12489 -12.11138 -11.94886 -11.68509 -11.65208 -11.56154 -11.14765 -10.91275 -10.80730 -10.63985 -9.74814 -9.57494 -9.51659 -8.88366 -7.88510 -5.21087 0.45212 0.55346 1.45712 1.47267 1.55861 1.55917 1.99997 2.48285 2.90294 3.32802 3.33577 3.46522 3.57246 3.60090 3.84445 3.96383 4.04078 4.12169 4.15227 4.19582 4.21738 4.31491 4.35320 4.36940 4.57347 4.63215 4.66199 4.67465 4.71972 4.74836 4.80747 4.82131 4.86728 4.88137 4.89552 4.95945 5.05132 5.13363 5.13996 5.19880 5.20746 5.21518 5.27603 5.28653 5.37454 5.52043 5.57711 5.63398 5.67529 5.69694 5.74478 5.95306 6.14367 6.40130 6.92868 7.12259 7.62566 8.64762 9.28997 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003517 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.546345 B = 7959.842033 C = 8970.647532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.036 4.036 3 C -0.118 4.118 4 C 0.524 3.476 5 O -0.578 6.578 6 N -0.598 5.598 7 C 0.117 3.883 8 C -0.105 4.105 9 C -0.085 4.085 10 C 0.130 3.870 11 N -0.635 5.635 12 C -0.225 4.225 13 H 0.084 0.916 14 C -0.065 4.065 15 N -0.953 5.953 16 Si 0.975 3.025 17 H -0.290 1.290 18 H -0.295 1.295 19 H -0.266 1.266 20 C 0.162 3.838 21 C -0.090 4.090 22 C 0.114 3.886 23 C -0.084 4.084 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.247 0.753 42 H 0.034 0.966 43 H 0.010 0.990 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.112 0.888 47 H 0.071 0.929 48 H 0.111 0.889 49 H 0.129 0.871 50 H 0.139 0.861 51 H 0.146 0.854 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.701 16.427 -11.333 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.039 4.039 3 C -0.175 4.175 4 C 0.313 3.687 5 O -0.458 6.458 6 N -0.330 5.330 7 C -0.006 4.006 8 C -0.144 4.144 9 C -0.086 4.086 10 C 0.005 3.995 11 N -0.360 5.360 12 C -0.353 4.353 13 H 0.101 0.899 14 C -0.258 4.258 15 N -0.602 5.602 16 Si 0.804 3.196 17 H -0.217 1.217 18 H -0.221 1.221 19 H -0.191 1.191 20 C 0.036 3.964 21 C -0.128 4.128 22 C -0.007 4.007 23 C -0.084 4.084 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.130 4.130 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.130 0.870 47 H 0.089 0.911 48 H 0.129 0.871 49 H 0.147 0.853 50 H 0.156 0.844 51 H 0.163 0.837 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.773 16.485 -10.971 22.543 hybrid contribution -0.681 -1.467 0.474 1.685 sum 10.092 15.018 -10.497 20.919 Atomic orbital electron populations 1.22255 0.90582 1.03495 1.04754 1.19752 0.98129 0.96536 0.89507 1.21648 1.00876 0.91891 1.03091 1.20875 0.78269 0.81582 0.87930 1.90643 1.43996 1.66135 1.44980 1.48145 1.52504 1.07744 1.24592 1.21601 0.95516 0.95791 0.87643 1.21645 0.96948 0.98503 0.97262 1.21829 0.96983 0.93325 0.96499 1.22524 0.88605 0.89747 0.98589 1.45890 1.11631 1.31561 1.46950 1.19309 0.95477 1.03039 1.17493 0.89869 1.25569 0.97539 1.02208 1.00505 1.70030 1.10600 1.41919 1.37654 0.85126 0.77219 0.78878 0.78423 1.21676 1.22125 1.19062 1.22012 0.96840 0.86687 0.90874 1.21371 0.97218 0.97784 0.96466 1.22207 0.92135 0.95867 0.90538 1.19523 0.97726 0.97088 0.94084 1.21313 0.97561 0.96892 0.99085 1.21305 1.00434 0.99996 0.92677 1.21463 0.97220 0.97882 0.97739 1.21446 0.96901 0.96066 0.99352 1.21173 1.00309 1.00489 0.91016 0.91422 0.88492 0.91575 0.93399 0.89426 0.92102 0.89494 0.90254 0.91979 0.90082 0.94209 0.93371 0.94445 0.94705 0.97256 0.92111 0.91993 0.87022 0.91052 0.87145 0.85325 0.84356 0.83652 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 7.98 71.98 0.57 -2.17 16 2 C -0.04 -0.75 0.60 -53.67 -0.03 -0.78 16 3 C -0.12 -2.23 7.69 71.98 0.55 -1.68 16 4 C 0.52 14.13 5.27 87.66 0.46 14.59 16 5 O -0.58 -19.20 15.40 -3.03 -0.05 -19.24 16 6 N -0.60 -15.47 1.88 -818.45 -1.54 -17.01 16 7 C 0.12 3.04 6.35 86.42 0.55 3.58 16 8 C -0.10 -3.05 5.30 30.57 0.16 -2.88 16 9 C -0.09 -3.00 0.84 -52.51 -0.04 -3.04 16 10 C 0.13 5.07 7.63 83.32 0.64 5.71 16 11 N -0.63 -32.10 3.55 -738.14 -2.62 -34.72 16 12 C -0.23 -12.52 10.74 84.03 0.90 -11.62 16 13 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 14 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 15 N -0.95 -57.70 11.51 21.65 0.25 -57.45 16 16 Si 0.98 45.54 29.55 68.60 2.03 47.56 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.16 7.65 6.54 83.31 0.55 8.20 16 21 C -0.09 -2.92 5.06 30.56 0.15 -2.76 16 22 C 0.11 2.92 3.42 86.42 0.30 3.22 16 23 C -0.08 -1.62 2.99 -19.87 -0.06 -1.68 16 24 C -0.13 -2.78 6.57 22.27 0.15 -2.63 16 25 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 26 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 27 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 28 C -0.11 -1.73 8.78 22.27 0.20 -1.53 16 29 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 30 H 0.10 1.23 6.49 -2.39 -0.02 1.21 16 31 H 0.07 1.35 4.64 -2.38 -0.01 1.34 16 32 H 0.05 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.09 1.19 7.91 -2.39 -0.02 1.17 16 34 H 0.06 1.22 8.11 -2.38 -0.02 1.20 16 35 H 0.09 2.34 6.97 -2.39 -0.02 2.33 16 36 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 39 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 40 H 0.05 1.76 7.53 -2.39 -0.02 1.74 16 41 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 42 H 0.03 1.87 7.11 -2.38 -0.02 1.86 16 43 H 0.01 0.47 8.09 -2.39 -0.02 0.46 16 44 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 45 H 0.06 1.98 7.68 -2.39 -0.02 1.96 16 46 H 0.11 2.56 3.16 -2.39 -0.01 2.55 16 47 H 0.07 1.86 6.83 -2.39 -0.02 1.84 16 48 H 0.11 2.65 5.72 -2.91 -0.02 2.64 16 49 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 50 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 51 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 52 H 0.15 1.55 6.88 -2.91 -0.02 1.53 16 Total: -1.00 -69.95 388.64 5.16 -64.79 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.91 Total: 20.21 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 6.18 Total: -4.14 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -3.91 Total: -109.17 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.95 5.16 -64.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035849091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.645 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds