Wall clock time and date at job start Wed Apr 1 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 120.00239 * 2 1 4 4 C 1.38236 * 120.00303 * 180.22826 * 3 2 1 5 5 C 1.38232 * 119.99703 * 359.80918 * 4 3 2 6 6 C 1.38233 * 120.00184 * 359.97438 * 5 4 3 7 7 C 1.50708 * 120.00247 * 179.97438 * 6 5 4 8 8 C 1.38236 * 120.00242 * 359.97259 * 6 5 4 9 9 C 1.50695 * 120.00421 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47433 * 90.00167 * 9 8 6 11 11 O 1.21288 * 119.99632 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00375 * 180.02562 * 10 9 8 13 13 C 1.47072 * 120.93198 * 359.97438 * 12 10 9 14 14 C 1.52634 * 107.78533 * 121.14999 * 13 12 10 15 15 C 1.50293 * 112.35380 * 52.45432 * 14 13 12 16 16 H 1.09005 * 106.39014 * 195.96427 * 15 14 13 17 17 C 1.52057 * 116.69981 * 314.11503 * 15 14 13 18 18 H 1.08995 * 111.29163 * 272.44946 * 17 15 14 19 19 C 1.56004 * 102.15616 * 154.09044 * 17 15 14 20 20 C 1.55066 * 101.17143 * 323.09243 * 19 17 15 21 21 N 1.46367 * 113.11225 * 81.00492 * 15 14 13 22 22 C 1.36942 * 126.00725 * 46.87134 * 21 15 14 23 23 H 1.07992 * 120.00091 * 0.09084 * 22 21 15 24 24 C 1.38818 * 119.99772 * 180.08216 * 22 21 15 25 25 N 1.31616 * 120.00186 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99732 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47378 * 89.99966 * 26 24 22 28 28 H 1.48503 * 109.47146 * 209.99939 * 26 24 22 29 29 H 1.48502 * 109.47277 * 329.99853 * 26 24 22 30 30 C 1.46121 * 120.93533 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47198 * 270.20880 * 1 2 3 32 32 H 1.09001 * 109.47385 * 30.21536 * 1 2 3 33 33 H 1.09005 * 109.47024 * 150.21355 * 1 2 3 34 34 H 1.08001 * 119.99574 * 0.05758 * 3 2 1 35 35 H 1.07997 * 120.00169 * 179.83143 * 4 3 2 36 36 H 1.07999 * 120.00236 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47077 * 269.98036 * 7 6 5 38 38 H 1.09001 * 109.46942 * 29.97449 * 7 6 5 39 39 H 1.08993 * 109.46979 * 149.97298 * 7 6 5 40 40 H 1.09012 * 109.47105 * 330.00134 * 9 8 6 41 41 H 1.08995 * 109.47478 * 210.00503 * 9 8 6 42 42 H 1.08999 * 109.79549 * 1.57736 * 13 12 10 43 43 H 1.08997 * 109.84225 * 240.74812 * 13 12 10 44 44 H 1.09002 * 108.89001 * 173.16793 * 14 13 12 45 45 H 1.08999 * 108.89110 * 291.74498 * 14 13 12 46 46 H 1.09002 * 111.08195 * 81.06727 * 19 17 15 47 47 H 1.09002 * 111.08344 * 205.07787 * 19 17 15 48 48 H 1.09001 * 110.35988 * 155.67151 * 20 19 17 49 49 H 1.08992 * 110.36146 * 277.86698 * 20 19 17 50 50 H 0.96999 * 120.00067 * 180.02562 * 25 24 22 51 51 H 1.09004 * 109.03811 * 353.03729 * 30 12 10 52 52 H 1.08996 * 109.04173 * 111.98117 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0048 5 6 4.2717 0.0000 -0.0056 6 6 3.5805 -1.1971 -0.0010 7 6 4.3340 -2.5023 -0.0025 8 6 2.1981 -1.1972 0.0048 9 6 1.4446 -2.5022 0.0104 10 6 1.1994 -2.9348 1.4329 11 8 1.5978 -2.2508 2.3519 12 7 0.5384 -4.0821 1.6841 13 6 0.0468 -4.9274 0.5855 14 6 0.6890 -6.3041 0.7333 15 6 0.4970 -6.8798 2.1082 16 1 1.2130 -7.6963 2.2026 17 6 0.7609 -5.9493 3.2815 18 1 1.8111 -5.9674 3.5726 19 6 -0.1361 -6.5667 4.3986 20 6 -1.3704 -7.0200 3.5766 21 7 -0.8163 -7.4990 2.2935 22 6 -1.4258 -8.3681 1.4285 23 1 -0.9308 -8.6543 0.5124 24 6 -2.6800 -8.8815 1.7294 25 7 -3.2835 -8.5324 2.8457 26 14 -3.5112 -10.0676 0.5498 27 1 -3.1315 -11.4602 0.8986 28 1 -4.9849 -9.9160 0.6519 29 1 -3.0780 -9.7696 -0.8390 30 6 0.2899 -4.5211 3.0554 31 1 -0.3633 0.0037 1.0276 32 1 -0.3634 0.8880 -0.5172 33 1 -0.3633 -0.8919 -0.5105 34 1 1.6582 2.1324 0.0009 35 1 4.1205 2.1324 -0.0075 36 1 5.3516 -0.0001 -0.0097 37 1 4.5110 -2.8186 -1.0304 38 1 5.2888 -2.3712 0.5068 39 1 3.7473 -3.2611 0.5153 40 1 2.0316 -3.2629 -0.5047 41 1 0.4901 -2.3729 -0.4997 42 1 0.3288 -4.4893 -0.3719 43 1 -1.0378 -5.0176 0.6450 44 1 0.2459 -6.9805 0.0024 45 1 1.7570 -6.2187 0.5325 46 1 0.3551 -7.4179 4.8701 47 1 -0.4119 -5.8162 5.1395 48 1 -1.8917 -7.8281 4.0897 49 1 -2.0447 -6.1800 3.4104 50 1 -4.1597 -8.8914 3.0561 51 1 0.8183 -3.8595 3.7419 52 1 -0.7793 -4.4638 3.2590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:33 Heat of formation + Delta-G solvation = 12.127292 kcal Electronic energy + Delta-G solvation = -31105.321850 eV Core-core repulsion = 27262.882912 eV Total energy + Delta-G solvation = -3842.438939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.34 seconds Orbital eigenvalues (eV) -40.56015 -39.50567 -38.04726 -35.10419 -33.67142 -33.51042 -32.76337 -31.74072 -29.72583 -28.88514 -27.72920 -26.73424 -26.66123 -25.08561 -23.83753 -22.60033 -21.32135 -20.77443 -20.16056 -19.44825 -18.08417 -17.05974 -16.55113 -16.34736 -16.18262 -15.62840 -15.15259 -14.74914 -14.57331 -14.45349 -14.06981 -13.95996 -13.46724 -13.29653 -13.19313 -13.04614 -13.01597 -12.88625 -12.78055 -12.50052 -12.26251 -12.13232 -11.74504 -11.70846 -11.57221 -11.35002 -11.18699 -11.08414 -10.96431 -10.86068 -10.79498 -10.59741 -10.20056 -10.12160 -9.97433 -9.66431 -9.61241 -9.51141 -8.67136 -8.61061 -8.58231 -8.24850 -6.84414 -5.70691 -3.10141 1.29132 1.33547 2.81585 3.23458 3.36072 3.41105 3.43240 3.71482 4.43993 4.54411 4.68948 4.77488 4.82377 4.87529 5.01841 5.13570 5.20614 5.25986 5.27951 5.30009 5.35852 5.41769 5.49537 5.50309 5.55147 5.56636 5.57962 5.63484 5.72035 5.75464 5.80879 5.85143 5.93484 6.07771 6.13420 6.15309 6.21649 6.30069 6.32441 6.41227 6.42447 6.47926 6.55849 6.61888 6.68593 6.76300 6.89883 6.96248 6.98117 7.48086 7.59353 7.69924 7.82382 8.30720 8.39566 9.17255 9.79638 10.46478 11.34932 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.002739 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.803024 B =10218.892355 C =10467.483679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.117 4.117 8 C -0.062 4.062 9 C -0.108 4.108 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.603 5.603 13 C 0.113 3.887 14 C -0.136 4.136 15 C 0.172 3.828 16 H 0.012 0.988 17 C -0.104 4.104 18 H 0.071 0.929 19 C -0.142 4.142 20 C 0.156 3.844 21 N -0.594 5.594 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.124 3.876 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.100 0.900 49 H 0.012 0.988 50 H 0.252 0.748 51 H 0.082 0.918 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.406 15.143 -6.382 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.174 4.174 8 C -0.062 4.062 9 C -0.147 4.147 10 C 0.305 3.695 11 O -0.419 6.419 12 N -0.335 5.335 13 C -0.009 4.009 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.029 0.971 17 C -0.124 4.124 18 H 0.089 0.911 19 C -0.181 4.181 20 C 0.031 3.969 21 N -0.319 5.319 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C 0.002 3.998 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.118 0.882 49 H 0.030 0.970 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.398 15.360 -5.909 20.019 hybrid contribution -0.489 -0.685 -0.640 1.057 sum 10.908 14.675 -6.549 19.423 Atomic orbital electron populations 1.20875 0.91401 1.02554 1.02720 1.19687 0.95883 0.92555 0.98618 1.20918 0.94245 0.97189 1.02204 1.21044 0.94279 0.97774 1.00294 1.20921 0.99480 0.91959 1.02223 1.19687 0.92953 0.95444 0.98623 1.20834 0.99993 0.94508 1.02045 1.19001 0.92756 0.93242 1.01238 1.20778 1.02180 0.96118 0.95645 1.20339 0.77649 0.80603 0.90896 1.90684 1.51191 1.53612 1.46454 1.47980 1.55658 1.21827 1.08077 1.21664 1.00149 0.90749 0.88378 1.21584 0.99190 0.96129 1.00679 1.19511 0.89990 0.92930 0.91157 0.97061 1.21881 0.99169 0.93935 0.97380 0.91108 1.23299 0.98937 0.99301 0.96607 1.21903 0.90752 0.98472 0.85760 1.44531 1.16279 1.50040 1.21013 1.18964 0.98725 1.17145 1.00033 0.90487 1.24761 0.97229 1.00664 0.97848 1.69835 1.15645 1.47401 1.23936 0.86129 0.78755 0.80902 0.80022 1.21664 1.21737 1.20768 1.21201 1.01216 0.95006 0.82400 0.90848 0.91583 0.91376 0.86317 0.86341 0.86322 0.91108 0.91478 0.91461 0.88018 0.87878 0.90718 0.90196 0.90072 0.93098 0.91928 0.92090 0.88249 0.96957 0.93746 0.89994 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.60 36.00 0.35 -0.89 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.40 9.70 -39.58 -0.38 -1.79 16 4 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.40 9.70 -39.59 -0.38 -1.79 16 6 C -0.07 -0.81 5.88 -104.62 -0.62 -1.42 16 7 C -0.12 -1.21 9.19 36.01 0.33 -0.88 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.28 3.10 -29.04 -0.09 -1.37 16 10 C 0.52 7.90 7.30 -10.99 -0.08 7.82 16 11 O -0.54 -10.05 15.45 5.55 0.09 -9.97 16 12 N -0.60 -9.38 2.94 -174.32 -0.51 -9.90 16 13 C 0.11 1.68 6.42 -3.92 -0.03 1.65 16 14 C -0.14 -2.24 5.62 -28.27 -0.16 -2.40 16 15 C 0.17 3.35 2.66 -69.83 -0.19 3.16 16 16 H 0.01 0.24 8.10 -51.93 -0.42 -0.18 16 17 C -0.10 -1.81 3.46 -89.97 -0.31 -2.12 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.14 -2.63 6.38 -24.03 -0.15 -2.78 16 20 C 0.16 3.60 5.50 -2.27 -0.01 3.59 16 21 N -0.59 -14.05 3.29 -165.59 -0.54 -14.60 16 22 C -0.22 -5.71 9.62 -15.05 -0.14 -5.86 16 23 H 0.08 1.92 7.09 -52.49 -0.37 1.55 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -25.88 10.17 55.49 0.56 -25.31 16 26 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 C 0.12 2.09 5.63 -4.72 -0.03 2.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.66 5.95 -51.93 -0.31 0.35 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 40 H 0.10 1.05 6.36 -51.92 -0.33 0.72 16 41 H 0.10 1.07 5.66 -51.93 -0.29 0.77 16 42 H 0.07 0.86 5.97 -51.93 -0.31 0.55 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.08 1.43 6.82 -51.93 -0.35 1.07 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 48 H 0.10 2.63 6.04 -51.93 -0.31 2.31 16 49 H 0.01 0.31 7.44 -51.93 -0.39 -0.08 16 50 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.08 1.40 6.97 -51.93 -0.36 1.04 16 52 H 0.07 1.23 6.80 -51.93 -0.35 0.88 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -30.80 393.29 -11.29 -42.09 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.33 Total: 3.17 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.46 Total: -7.63 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.49 Total: -49.81 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.80 -11.29 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.219 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.35 seconds