Wall clock time and date at job start Wed Apr 1 2020 01:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38240 * 119.99908 * 2 1 4 4 C 1.38241 * 119.99850 * 180.24895 * 3 2 1 5 5 C 1.38237 * 119.99947 * 359.78584 * 4 3 2 6 6 C 1.38237 * 119.99949 * 359.96266 * 5 4 3 7 7 C 1.50700 * 119.99587 * 179.97438 * 6 5 4 8 8 C 1.38226 * 119.99951 * 0.02562 * 6 5 4 9 9 C 1.50704 * 119.99937 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47464 * 89.99935 * 9 8 6 11 11 O 1.21280 * 119.99764 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00361 * 180.02562 * 10 9 8 13 13 C 1.45947 * 118.25869 * 0.02562 * 12 10 9 14 14 C 1.53143 * 108.20242 * 148.95978 * 13 12 10 15 15 C 1.52826 * 108.60397 * 61.92886 * 14 13 12 16 16 H 1.08998 * 109.63051 * 62.92682 * 15 14 13 17 17 C 1.51789 * 111.59689 * 301.25819 * 15 14 13 18 18 H 1.09004 * 107.16099 * 143.18811 * 17 15 14 19 19 C 1.54126 * 105.57000 * 256.31484 * 17 15 14 20 20 C 1.54221 * 103.28792 * 334.26485 * 19 17 15 21 21 N 1.46882 * 106.56170 * 27.30293 * 20 19 17 22 22 C 1.36942 * 125.45764 * 161.34927 * 21 20 19 23 23 H 1.07989 * 120.00268 * 180.02562 * 22 21 20 24 24 C 1.38813 * 119.99296 * 0.02562 * 22 21 20 25 25 N 1.31618 * 120.00921 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99671 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47005 * 59.99488 * 26 24 22 28 28 H 1.48498 * 109.47203 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46863 * 300.00046 * 26 24 22 30 30 C 1.44368 * 118.26232 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.47363 * 270.23454 * 1 2 3 32 32 H 1.08997 * 109.47222 * 30.23882 * 1 2 3 33 33 H 1.09001 * 109.46922 * 150.23629 * 1 2 3 34 34 H 1.07992 * 120.00383 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00006 * 179.77259 * 4 3 2 36 36 H 1.07999 * 120.00075 * 179.97438 * 5 4 3 37 37 H 1.09007 * 109.47000 * 270.01626 * 7 6 5 38 38 H 1.09000 * 109.47515 * 30.01791 * 7 6 5 39 39 H 1.08999 * 109.46986 * 150.02241 * 7 6 5 40 40 H 1.09005 * 109.46807 * 329.99526 * 9 8 6 41 41 H 1.09005 * 109.47454 * 210.00139 * 9 8 6 42 42 H 1.08997 * 109.71703 * 29.27930 * 13 12 10 43 43 H 1.09003 * 109.74822 * 268.65479 * 13 12 10 44 44 H 1.09000 * 109.61524 * 302.19777 * 14 13 12 45 45 H 1.09000 * 109.76518 * 181.75627 * 14 13 12 46 46 H 1.09002 * 110.68575 * 215.81079 * 19 17 15 47 47 H 1.09001 * 110.65480 * 92.70412 * 19 17 15 48 48 H 1.09002 * 110.04871 * 268.01168 * 20 19 17 49 49 H 1.09005 * 110.04397 * 146.59328 * 20 19 17 50 50 H 0.96995 * 120.00569 * 180.02562 * 25 24 22 51 51 H 1.09007 * 107.88764 * 296.79236 * 30 12 10 52 52 H 1.08997 * 107.88864 * 52.89533 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0000 -0.0059 6 6 3.5805 -1.1971 -0.0007 7 6 4.3340 -2.5022 -0.0021 8 6 2.1982 -1.1971 0.0048 9 6 1.4447 -2.5022 0.0099 10 6 1.1991 -2.9349 1.4324 11 8 1.5972 -2.2511 2.3515 12 7 0.5380 -4.0823 1.6832 13 6 0.0773 -4.8765 0.5487 14 6 0.0935 -6.3517 0.9595 15 6 -0.8763 -6.5439 2.1248 16 1 -1.8897 -6.3068 1.8009 17 6 -0.5033 -5.6740 3.3114 18 1 -1.4338 -5.3329 3.7653 19 6 0.1551 -6.6244 4.3305 20 6 -0.4600 -7.9958 3.9850 21 7 -0.8122 -7.9496 2.5597 22 6 -1.0433 -9.0390 1.7628 23 1 -1.2968 -8.9026 0.7220 24 6 -0.9516 -10.3186 2.2930 25 7 -0.6421 -10.4849 3.5615 26 14 -1.2662 -11.8048 1.2059 27 1 -0.2945 -11.8112 0.0829 28 1 -1.1061 -13.0458 2.0055 29 1 -2.6475 -11.7387 0.6647 30 6 0.3230 -4.4605 3.0597 31 1 -0.3634 0.0042 1.0276 32 1 -0.3633 0.8878 -0.5175 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6582 2.1325 0.0004 35 1 4.1205 2.1325 -0.0089 36 1 5.3516 0.0000 -0.0104 37 1 4.5111 -2.8184 -1.0301 38 1 5.2887 -2.3711 0.5073 39 1 3.7472 -3.2611 0.5155 40 1 2.0318 -3.2627 -0.5051 41 1 0.4902 -2.3728 -0.5004 42 1 0.7426 -4.7241 -0.3012 43 1 -0.9367 -4.5808 0.2796 44 1 1.0994 -6.6340 1.2702 45 1 -0.2173 -6.9719 0.1187 46 1 -0.1013 -6.3340 5.3494 47 1 1.2365 -6.6433 4.1957 48 1 -1.3537 -8.1665 4.5853 49 1 0.2674 -8.7875 4.1647 50 1 -0.5777 -11.3791 3.9318 51 1 1.2984 -4.6247 3.5180 52 1 -0.1450 -3.6182 3.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:50 Heat of formation + Delta-G solvation = 11.697508 kcal Electronic energy + Delta-G solvation = -30712.784138 eV Core-core repulsion = 26870.326563 eV Total energy + Delta-G solvation = -3842.457575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -40.72469 -39.58733 -38.12834 -35.42974 -33.71684 -33.61014 -32.83023 -31.71589 -30.03148 -29.00354 -28.11844 -26.77709 -26.65989 -25.05784 -23.46398 -22.74048 -21.37400 -20.81914 -20.31865 -19.44081 -17.86495 -17.17996 -17.06896 -16.46071 -16.34056 -15.50054 -15.38609 -14.98401 -14.70143 -14.59704 -14.13908 -13.78376 -13.35783 -13.33587 -13.29195 -13.18849 -13.05838 -12.89517 -12.81820 -12.53422 -12.36183 -12.27650 -11.78665 -11.74179 -11.63874 -11.43974 -11.32690 -11.08398 -10.96979 -10.94163 -10.82574 -10.76875 -10.24201 -10.15881 -9.87160 -9.71724 -9.60709 -9.54062 -8.66651 -8.64328 -8.62282 -8.39088 -6.88894 -5.70576 -3.10173 1.24620 1.29394 2.71273 3.12766 3.37009 3.41428 3.43035 3.66097 4.43377 4.48567 4.63326 4.68171 4.78017 4.83484 4.93960 5.05312 5.08681 5.17047 5.18660 5.23640 5.28220 5.29821 5.39214 5.47185 5.49222 5.52318 5.53776 5.56411 5.61317 5.71232 5.76207 5.82209 5.91961 6.03290 6.07496 6.09453 6.10724 6.19642 6.27897 6.38585 6.39175 6.43784 6.55930 6.57117 6.62155 6.78021 6.87237 6.93552 7.00551 7.49524 7.51875 7.60740 7.82712 8.29456 8.30141 9.18710 9.79423 10.43794 11.35389 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.002471 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.711439 B =11328.181745 C =11579.398311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.066 4.066 7 C -0.118 4.118 8 C -0.063 4.063 9 C -0.107 4.107 10 C 0.509 3.491 11 O -0.535 6.535 12 N -0.597 5.597 13 C 0.105 3.895 14 C -0.137 4.137 15 C 0.175 3.825 16 H 0.033 0.967 17 C -0.102 4.102 18 H 0.062 0.938 19 C -0.135 4.135 20 C 0.160 3.840 21 N -0.596 5.596 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.143 3.857 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.015 0.985 49 H 0.093 0.907 50 H 0.253 0.747 51 H 0.057 0.943 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 19.992 -8.437 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.067 4.067 7 C -0.175 4.175 8 C -0.064 4.064 9 C -0.147 4.147 10 C 0.296 3.704 11 O -0.412 6.412 12 N -0.330 5.330 13 C -0.018 4.018 14 C -0.177 4.177 15 C 0.067 3.933 16 H 0.051 0.949 17 C -0.122 4.122 18 H 0.081 0.919 19 C -0.174 4.174 20 C 0.035 3.965 21 N -0.320 5.320 22 C -0.352 4.352 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.743 3.257 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.020 3.980 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.111 0.889 50 H 0.063 0.937 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.797 20.047 -7.865 22.301 hybrid contribution -0.263 -0.830 -0.464 0.987 sum 5.534 19.217 -8.328 21.662 Atomic orbital electron populations 1.20868 0.91443 1.02535 1.02651 1.19675 0.95851 0.92558 0.98719 1.20920 0.94252 0.97186 1.02209 1.21056 0.94283 0.97797 1.00183 1.20936 0.99538 0.91948 1.02110 1.19696 0.92960 0.95477 0.98519 1.20843 1.00063 0.94446 1.02108 1.18990 0.92763 0.93215 1.01423 1.20808 1.02256 0.96176 0.95436 1.20455 0.78212 0.80651 0.91066 1.90699 1.50443 1.53641 1.46462 1.47310 1.56183 1.22390 1.07129 1.21721 0.99352 0.92955 0.87804 1.22286 1.02117 0.92467 1.00831 1.20225 0.95553 0.86144 0.91351 0.94940 1.20747 0.98970 0.94218 0.98215 0.91900 1.22861 0.99734 0.97832 0.96933 1.21481 0.98307 0.92479 0.84214 1.44498 1.81650 0.98966 1.06923 1.18950 1.40285 0.83702 0.92283 0.90483 1.24794 1.01993 0.97418 0.96269 1.69873 1.54557 1.20865 1.11606 0.86193 0.78010 0.82260 0.79248 1.21158 1.21618 1.21212 1.19912 1.00245 0.96623 0.81236 0.90905 0.91573 0.91406 0.86306 0.86309 0.86272 0.91038 0.91399 0.91490 0.87890 0.87825 0.90681 0.91806 0.91324 0.90451 0.92083 0.92321 0.96654 0.88926 0.93672 0.92424 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.60 36.00 0.35 -0.76 16 2 C -0.07 -0.77 5.88 -104.63 -0.62 -1.39 16 3 C -0.13 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.07 -0.77 5.88 -104.63 -0.62 -1.39 16 7 C -0.12 -1.19 9.19 36.01 0.33 -0.86 16 8 C -0.06 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.11 -1.17 3.21 -29.03 -0.09 -1.27 16 10 C 0.51 7.28 7.19 -10.99 -0.08 7.20 16 11 O -0.54 -9.55 15.81 5.56 0.09 -9.46 16 12 N -0.60 -8.54 3.14 -178.12 -0.56 -9.10 16 13 C 0.10 1.33 5.92 -4.27 -0.03 1.30 16 14 C -0.14 -2.27 5.21 -26.75 -0.14 -2.41 16 15 C 0.18 3.37 3.22 -68.21 -0.22 3.16 16 16 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.10 -1.76 2.70 -92.63 -0.25 -2.01 16 18 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 19 C -0.13 -2.52 6.38 -25.50 -0.16 -2.68 16 20 C 0.16 3.80 5.67 -3.20 -0.02 3.78 16 21 N -0.60 -14.43 3.14 -164.82 -0.52 -14.94 16 22 C -0.22 -5.91 9.68 -15.06 -0.15 -6.05 16 23 H 0.08 1.94 7.51 -52.49 -0.39 1.54 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -26.32 10.17 55.49 0.56 -25.76 16 26 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.14 2.25 5.19 -7.16 -0.04 2.21 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 40 H 0.10 0.97 5.85 -51.93 -0.30 0.67 16 41 H 0.10 0.93 5.86 -51.93 -0.30 0.63 16 42 H 0.07 0.76 6.20 -51.93 -0.32 0.44 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.30 7.64 -51.93 -0.40 0.91 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 2.48 6.19 -51.93 -0.32 2.16 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 52 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -31.60 395.65 -11.43 -43.02 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.50 Total: 1.56 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.44 Total: -7.72 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.51 Total: -49.80 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.60 -11.43 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.718 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds