Wall clock time and date at job start Wed Apr 1 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38240 * 119.99908 * 2 1 4 4 C 1.38241 * 119.99850 * 180.24895 * 3 2 1 5 5 C 1.38237 * 119.99947 * 359.78584 * 4 3 2 6 6 C 1.38237 * 119.99949 * 359.96266 * 5 4 3 7 7 C 1.50700 * 119.99587 * 179.97438 * 6 5 4 8 8 C 1.38226 * 119.99951 * 0.02562 * 6 5 4 9 9 C 1.50704 * 119.99937 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47464 * 89.99935 * 9 8 6 11 11 O 1.21280 * 119.99764 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00361 * 180.02562 * 10 9 8 13 13 C 1.45947 * 118.25869 * 0.02562 * 12 10 9 14 14 C 1.53143 * 108.20242 * 148.95978 * 13 12 10 15 15 C 1.52826 * 108.60397 * 61.92886 * 14 13 12 16 16 H 1.08998 * 109.63051 * 62.92682 * 15 14 13 17 17 C 1.51789 * 111.59689 * 301.25819 * 15 14 13 18 18 H 1.09004 * 107.16099 * 143.18811 * 17 15 14 19 19 C 1.54126 * 105.57000 * 256.31484 * 17 15 14 20 20 C 1.54221 * 103.28792 * 334.26485 * 19 17 15 21 21 N 1.46882 * 106.56170 * 27.30293 * 20 19 17 22 22 C 1.36942 * 125.45764 * 161.34927 * 21 20 19 23 23 H 1.07989 * 120.00268 * 180.02562 * 22 21 20 24 24 C 1.38813 * 119.99296 * 0.02562 * 22 21 20 25 25 N 1.31618 * 120.00921 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99671 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47005 * 59.99488 * 26 24 22 28 28 H 1.48498 * 109.47203 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46863 * 300.00046 * 26 24 22 30 30 C 1.44368 * 118.26232 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.47363 * 270.23454 * 1 2 3 32 32 H 1.08997 * 109.47222 * 30.23882 * 1 2 3 33 33 H 1.09001 * 109.46922 * 150.23629 * 1 2 3 34 34 H 1.07992 * 120.00383 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00006 * 179.77259 * 4 3 2 36 36 H 1.07999 * 120.00075 * 179.97438 * 5 4 3 37 37 H 1.09007 * 109.47000 * 270.01626 * 7 6 5 38 38 H 1.09000 * 109.47515 * 30.01791 * 7 6 5 39 39 H 1.08999 * 109.46986 * 150.02241 * 7 6 5 40 40 H 1.09005 * 109.46807 * 329.99526 * 9 8 6 41 41 H 1.09005 * 109.47454 * 210.00139 * 9 8 6 42 42 H 1.08997 * 109.71703 * 29.27930 * 13 12 10 43 43 H 1.09003 * 109.74822 * 268.65479 * 13 12 10 44 44 H 1.09000 * 109.61524 * 302.19777 * 14 13 12 45 45 H 1.09000 * 109.76518 * 181.75627 * 14 13 12 46 46 H 1.09002 * 110.68575 * 215.81079 * 19 17 15 47 47 H 1.09001 * 110.65480 * 92.70412 * 19 17 15 48 48 H 1.09002 * 110.04871 * 268.01168 * 20 19 17 49 49 H 1.09005 * 110.04397 * 146.59328 * 20 19 17 50 50 H 0.96995 * 120.00569 * 180.02562 * 25 24 22 51 51 H 1.09007 * 107.88764 * 296.79236 * 30 12 10 52 52 H 1.08997 * 107.88864 * 52.89533 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0000 -0.0059 6 6 3.5805 -1.1971 -0.0007 7 6 4.3340 -2.5022 -0.0021 8 6 2.1982 -1.1971 0.0048 9 6 1.4447 -2.5022 0.0099 10 6 1.1991 -2.9349 1.4324 11 8 1.5972 -2.2511 2.3515 12 7 0.5380 -4.0823 1.6832 13 6 0.0773 -4.8765 0.5487 14 6 0.0935 -6.3517 0.9595 15 6 -0.8763 -6.5439 2.1248 16 1 -1.8897 -6.3068 1.8009 17 6 -0.5033 -5.6740 3.3114 18 1 -1.4338 -5.3329 3.7653 19 6 0.1551 -6.6244 4.3305 20 6 -0.4600 -7.9958 3.9850 21 7 -0.8122 -7.9496 2.5597 22 6 -1.0433 -9.0390 1.7628 23 1 -1.2968 -8.9026 0.7220 24 6 -0.9516 -10.3186 2.2930 25 7 -0.6421 -10.4849 3.5615 26 14 -1.2662 -11.8048 1.2059 27 1 -0.2945 -11.8112 0.0829 28 1 -1.1061 -13.0458 2.0055 29 1 -2.6475 -11.7387 0.6647 30 6 0.3230 -4.4605 3.0597 31 1 -0.3634 0.0042 1.0276 32 1 -0.3633 0.8878 -0.5175 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6582 2.1325 0.0004 35 1 4.1205 2.1325 -0.0089 36 1 5.3516 0.0000 -0.0104 37 1 4.5111 -2.8184 -1.0301 38 1 5.2887 -2.3711 0.5073 39 1 3.7472 -3.2611 0.5155 40 1 2.0318 -3.2627 -0.5051 41 1 0.4902 -2.3728 -0.5004 42 1 0.7426 -4.7241 -0.3012 43 1 -0.9367 -4.5808 0.2796 44 1 1.0994 -6.6340 1.2702 45 1 -0.2173 -6.9719 0.1187 46 1 -0.1013 -6.3340 5.3494 47 1 1.2365 -6.6433 4.1957 48 1 -1.3537 -8.1665 4.5853 49 1 0.2674 -8.7875 4.1647 50 1 -0.5777 -11.3791 3.9318 51 1 1.2984 -4.6247 3.5180 52 1 -0.1450 -3.6182 3.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036727640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:44 Heat of formation + Delta-G solvation = -4.185950 kcal Electronic energy + Delta-G solvation = -30713.472897 eV Core-core repulsion = 26870.326563 eV Total energy + Delta-G solvation = -3843.146334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -41.81578 -40.61258 -39.44667 -36.84321 -34.82915 -34.45633 -34.18808 -33.20960 -31.54900 -30.26903 -29.37722 -27.55322 -27.50362 -26.76811 -24.92476 -24.06229 -22.38237 -22.05212 -21.57232 -20.55744 -19.21064 -18.92638 -18.26637 -17.44123 -17.21898 -16.79895 -16.64251 -16.52586 -16.11668 -15.60040 -15.38748 -15.04583 -14.61143 -14.46995 -14.32074 -14.12680 -14.05064 -13.88184 -13.78810 -13.72854 -13.52643 -13.33900 -13.28401 -13.03078 -12.99790 -12.57905 -12.56417 -12.50673 -12.42863 -12.29260 -12.04153 -11.83856 -11.74598 -11.67084 -11.58489 -11.32653 -11.16790 -10.85489 -10.66520 -9.57099 -9.45891 -9.38696 -8.86180 -7.75841 -5.16835 0.45675 0.52059 1.48590 1.51189 1.57240 1.63530 2.03490 2.51597 2.85817 3.35975 3.50042 3.67751 3.68082 3.76433 3.80849 3.90436 4.01674 4.07556 4.10027 4.14626 4.22493 4.26109 4.42202 4.46676 4.49421 4.53057 4.59059 4.59663 4.73912 4.75794 4.79179 4.81604 4.82527 4.85130 4.91355 4.91620 4.99304 5.03064 5.04845 5.14299 5.30835 5.34448 5.37657 5.50709 5.55356 5.62151 5.63317 5.67194 5.68947 5.78844 5.83511 6.19031 6.29999 6.40506 7.14148 7.19350 7.82850 8.46058 9.29073 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.002471 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.711439 B =11328.181745 C =11579.398311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.101 4.101 10 C 0.511 3.489 11 O -0.575 6.575 12 N -0.599 5.599 13 C 0.112 3.888 14 C -0.127 4.127 15 C 0.166 3.834 16 H 0.035 0.965 17 C -0.090 4.090 18 H 0.070 0.930 19 C -0.122 4.122 20 C 0.165 3.835 21 N -0.616 5.616 22 C -0.226 4.226 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.976 3.024 27 H -0.275 1.275 28 H -0.300 1.300 29 H -0.278 1.278 30 C 0.152 3.848 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.059 0.941 48 H -0.015 1.015 49 H 0.056 0.944 50 H 0.244 0.756 51 H 0.046 0.954 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 21.982 -10.874 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.172 4.172 8 C -0.085 4.085 9 C -0.139 4.139 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.332 5.332 13 C -0.011 4.011 14 C -0.167 4.167 15 C 0.060 3.940 16 H 0.052 0.948 17 C -0.109 4.109 18 H 0.088 0.912 19 C -0.161 4.161 20 C 0.040 3.960 21 N -0.341 5.341 22 C -0.355 4.355 23 H 0.106 0.894 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.805 3.195 27 H -0.201 1.201 28 H -0.227 1.227 29 H -0.204 1.204 30 C 0.028 3.972 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.003 0.997 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.064 0.936 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.789 22.070 -10.346 25.052 hybrid contribution -0.256 -1.380 0.312 1.437 sum 5.533 20.690 -10.034 23.651 Atomic orbital electron populations 1.20884 0.90321 1.03970 1.02140 1.20007 0.96940 0.92788 0.98659 1.21251 0.94725 0.97832 1.01936 1.21398 0.94497 0.98638 0.99302 1.21232 1.00549 0.92006 1.02064 1.19994 0.93343 0.96357 0.98805 1.20842 0.99763 0.93520 1.03086 1.19199 0.93143 0.93821 1.02325 1.20839 1.03712 0.96292 0.93103 1.21005 0.76952 0.79844 0.92132 1.90684 1.51915 1.54790 1.48020 1.47366 1.56280 1.22756 1.06795 1.21829 1.01606 0.89645 0.87975 1.22081 0.99782 0.95468 0.99340 1.20474 0.96453 0.83878 0.93173 0.94751 1.20631 0.99357 0.94059 0.96894 0.91186 1.22705 0.99474 0.95268 0.98652 1.21216 0.96251 0.94323 0.84258 1.44784 1.81582 1.00730 1.06954 1.19370 1.38616 0.84514 0.92986 0.89383 1.25624 1.02953 1.00233 0.97517 1.70129 1.56392 1.20568 1.13286 0.85178 0.78199 0.78509 0.77619 1.20057 1.22680 1.20423 1.19668 0.99202 0.95693 0.82592 0.92240 0.89861 0.90353 0.84529 0.84121 0.84750 0.89234 0.91091 0.92873 0.86130 0.85437 0.87232 0.89622 0.93386 0.90610 0.89974 0.92216 0.99712 0.92538 0.94641 0.93560 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.60 71.23 0.68 -1.23 16 2 C -0.08 -1.74 5.88 -19.87 -0.12 -1.86 16 3 C -0.14 -2.64 9.70 22.27 0.22 -2.42 16 4 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 5 C -0.14 -2.75 9.70 22.27 0.22 -2.54 16 6 C -0.08 -1.84 5.88 -19.87 -0.12 -1.95 16 7 C -0.12 -2.13 9.19 71.24 0.65 -1.48 16 8 C -0.08 -1.85 4.37 -19.87 -0.09 -1.94 16 9 C -0.10 -1.90 3.21 29.10 0.09 -1.81 16 10 C 0.51 13.54 7.19 87.66 0.63 14.17 16 11 O -0.57 -19.91 15.81 -3.03 -0.05 -19.96 16 12 N -0.60 -15.71 3.14 -835.83 -2.62 -18.34 16 13 C 0.11 2.44 5.92 86.53 0.51 2.96 16 14 C -0.13 -3.97 5.21 30.58 0.16 -3.81 16 15 C 0.17 6.26 3.22 44.39 0.14 6.40 16 16 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.09 -3.01 2.70 -12.10 -0.03 -3.04 16 18 H 0.07 2.25 8.10 -2.38 -0.02 2.23 16 19 C -0.12 -4.58 6.38 31.39 0.20 -4.38 16 20 C 0.16 8.12 5.67 86.72 0.49 8.61 16 21 N -0.62 -30.20 3.14 -675.38 -2.12 -32.32 16 22 C -0.23 -12.00 9.68 84.03 0.81 -11.19 16 23 H 0.09 4.36 7.51 -2.92 -0.02 4.34 16 24 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 25 N -0.95 -56.69 10.17 21.65 0.22 -56.47 16 26 Si 0.98 44.64 29.55 68.60 2.03 46.67 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 30 C 0.15 4.57 5.19 85.49 0.44 5.01 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.08 1.07 5.94 -2.39 -0.01 1.05 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 39 H 0.05 1.11 6.37 -2.39 -0.02 1.10 16 40 H 0.12 1.85 5.85 -2.38 -0.01 1.83 16 41 H 0.13 1.77 5.86 -2.38 -0.01 1.76 16 42 H 0.11 1.71 6.20 -2.39 -0.01 1.70 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 2.40 7.64 -2.39 -0.02 2.38 16 46 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.06 2.22 7.70 -2.39 -0.02 2.20 16 48 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H 0.06 3.19 6.19 -2.38 -0.01 3.18 16 50 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.05 1.51 7.31 -2.38 -0.02 1.49 16 52 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 Total: -1.00 -71.17 395.65 3.96 -67.21 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.90 Total: 19.13 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.60 Total: -5.93 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -4.52 Total: -107.12 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.17 3.96 -67.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.027 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds