Wall clock time and date at job start Wed Apr 1 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 119.99914 * 2 1 4 4 C 1.38236 * 119.99755 * 180.24875 * 3 2 1 5 5 C 1.38241 * 120.00143 * 359.79216 * 4 3 2 6 6 C 1.38235 * 119.99896 * 359.95195 * 5 4 3 7 7 C 1.50701 * 120.00034 * 180.02562 * 6 5 4 8 8 C 1.38230 * 120.00035 * 179.76131 * 2 1 3 9 9 C 1.50708 * 119.99992 * 0.02562 * 8 2 1 10 10 C 1.50705 * 109.46608 * 269.72572 * 9 8 2 11 11 O 1.21280 * 119.99853 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99529 * 180.02562 * 10 9 8 13 13 C 1.46597 * 119.68592 * 359.97438 * 12 10 9 14 14 C 1.53959 * 110.57576 * 227.84716 * 13 12 10 15 15 C 1.51516 * 107.34584 * 308.94916 * 14 13 12 16 16 H 1.09004 * 108.80318 * 306.55370 * 15 14 13 17 17 C 1.55357 * 107.79455 * 64.85807 * 15 14 13 18 18 H 1.08996 * 111.51380 * 51.18593 * 17 15 14 19 19 C 1.53748 * 100.21926 * 169.08590 * 17 15 14 20 20 C 1.55288 * 101.84078 * 320.90320 * 19 17 15 21 21 N 1.45467 * 117.34550 * 181.90934 * 15 14 13 22 22 C 1.36932 * 126.40872 * 30.88502 * 21 15 14 23 23 H 1.08002 * 119.99998 * 359.71043 * 22 21 15 24 24 C 1.38810 * 120.00253 * 179.70867 * 22 21 15 25 25 N 1.31626 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46656 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47194 * 120.00119 * 26 24 22 29 29 H 1.48496 * 109.46961 * 240.00040 * 26 24 22 30 30 C 1.47722 * 119.68080 * 180.02562 * 12 10 9 31 31 H 1.08993 * 109.47474 * 270.23758 * 1 2 3 32 32 H 1.09002 * 109.47082 * 30.23849 * 1 2 3 33 33 H 1.08999 * 109.47383 * 150.23485 * 1 2 3 34 34 H 1.07999 * 120.00376 * 0.02562 * 3 2 1 35 35 H 1.07996 * 120.00335 * 179.76284 * 4 3 2 36 36 H 1.07998 * 120.00249 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47038 * 270.02270 * 7 6 5 38 38 H 1.09002 * 109.46766 * 30.02719 * 7 6 5 39 39 H 1.09004 * 109.46929 * 150.02260 * 7 6 5 40 40 H 1.08994 * 109.46893 * 149.72387 * 9 8 2 41 41 H 1.08993 * 109.47046 * 29.71950 * 9 8 2 42 42 H 1.09003 * 109.25632 * 107.56789 * 13 12 10 43 43 H 1.08996 * 109.22651 * 348.11170 * 13 12 10 44 44 H 1.08993 * 109.87973 * 189.48543 * 14 13 12 45 45 H 1.08996 * 109.94113 * 68.44032 * 14 13 12 46 46 H 1.09000 * 110.95285 * 202.77199 * 19 17 15 47 47 H 1.08994 * 110.99021 * 79.05655 * 19 17 15 48 48 H 1.08998 * 109.92258 * 263.13469 * 20 19 17 49 49 H 1.08998 * 109.92218 * 141.83292 * 20 19 17 50 50 H 0.97005 * 119.99956 * 179.97438 * 25 24 22 51 51 H 1.08997 * 110.07017 * 8.70660 * 30 12 10 52 52 H 1.09000 * 110.06560 * 247.12940 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2718 -0.0001 -0.0061 6 6 3.5806 -1.1972 -0.0007 7 6 4.3341 -2.5023 -0.0011 8 6 2.1982 -1.1971 0.0050 9 6 1.4446 -2.5023 0.0098 10 6 1.1989 -2.9350 1.4324 11 8 1.5969 -2.2512 2.3515 12 7 0.5377 -4.0824 1.6829 13 6 0.0603 -4.9038 0.5665 14 6 -1.4081 -5.3120 0.7843 15 6 -1.5104 -5.9061 2.1744 16 1 -0.7700 -6.7000 2.2726 17 6 -1.1911 -4.7804 3.1965 18 1 -1.7876 -3.8880 3.0075 19 6 -1.6160 -5.4700 4.5033 20 6 -2.8963 -6.2295 4.0612 21 7 -2.8102 -6.4076 2.5928 22 6 -3.7720 -6.9487 1.7820 23 1 -3.5991 -7.0297 0.7190 24 6 -4.9690 -7.3932 2.3264 25 7 -5.1799 -7.2941 3.6219 26 14 -6.2813 -8.1308 1.2202 27 1 -5.8024 -8.1282 -0.1854 28 1 -6.5600 -9.5261 1.6452 29 1 -7.5244 -7.3248 1.3218 30 6 0.3002 -4.4996 3.0799 31 1 -0.3634 0.0043 1.0276 32 1 -0.3633 0.8879 -0.5175 33 1 -0.3634 -0.8921 -0.5102 34 1 1.6582 2.1325 0.0004 35 1 4.1206 2.1324 -0.0091 36 1 5.3517 -0.0001 -0.0105 37 1 4.5118 -2.8189 -1.0287 38 1 5.2884 -2.3710 0.5090 39 1 3.7468 -3.2610 0.5165 40 1 2.0318 -3.2626 -0.5050 41 1 0.4903 -2.3727 -0.5005 42 1 0.6753 -5.8007 0.4913 43 1 0.1414 -4.3338 -0.3590 44 1 -1.7007 -6.0541 0.0416 45 1 -2.0527 -4.4364 0.7071 46 1 -1.8456 -4.7352 5.2750 47 1 -0.8491 -6.1649 4.8453 48 1 -3.7808 -5.6445 4.3130 49 1 -2.9391 -7.2021 4.5514 50 1 -6.0165 -7.6044 4.0022 51 1 0.5844 -3.6991 3.7629 52 1 0.8690 -5.4024 3.3025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:59 Heat of formation + Delta-G solvation = 11.709572 kcal Electronic energy + Delta-G solvation = -30771.201988 eV Core-core repulsion = 26928.744936 eV Total energy + Delta-G solvation = -3842.457052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.63874 -39.53119 -38.07635 -35.35273 -33.71085 -33.55772 -32.64619 -31.56490 -30.01080 -28.92978 -28.01624 -26.77120 -26.58432 -24.87856 -23.43547 -22.39497 -21.30621 -20.81408 -20.08931 -19.71560 -18.76177 -17.22411 -16.47427 -16.40652 -16.17101 -15.56546 -15.09953 -14.88799 -14.61054 -14.40332 -14.09395 -13.90133 -13.60360 -13.33270 -13.26337 -13.13522 -13.05303 -12.85315 -12.74222 -12.64134 -12.41915 -12.33683 -11.77588 -11.67716 -11.63021 -11.47659 -11.41689 -11.01817 -10.96145 -10.85579 -10.81968 -10.72137 -10.15246 -10.09276 -9.90749 -9.67767 -9.65337 -9.46687 -8.65673 -8.64845 -8.61930 -8.48838 -6.85878 -5.73980 -3.07214 1.24928 1.29904 2.71686 3.08328 3.37261 3.42289 3.45197 3.65692 4.46305 4.48487 4.64221 4.66562 4.77499 4.83980 4.93937 5.01878 5.09177 5.15772 5.20861 5.24678 5.31855 5.34165 5.43334 5.50189 5.52471 5.54529 5.57411 5.59564 5.61926 5.69907 5.77909 5.79206 5.88405 6.02263 6.03691 6.11684 6.14277 6.16691 6.22258 6.34979 6.39045 6.43869 6.49424 6.57592 6.60494 6.62435 6.83127 6.93947 7.04900 7.50816 7.53767 7.59965 7.79089 8.21995 8.28270 9.16929 9.80673 10.48859 11.38633 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002555 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.078978 B =10954.246581 C =11294.008484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.063 4.063 9 C -0.109 4.109 10 C 0.515 3.485 11 O -0.537 6.537 12 N -0.609 5.609 13 C 0.110 3.890 14 C -0.130 4.130 15 C 0.168 3.832 16 H 0.019 0.981 17 C -0.123 4.123 18 H 0.079 0.921 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.225 4.225 23 H 0.079 0.921 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.127 3.873 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.252 0.748 51 H 0.088 0.912 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.141 12.142 -8.550 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.064 4.064 9 C -0.148 4.148 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.342 5.342 13 C -0.014 4.014 14 C -0.169 4.169 15 C 0.059 3.941 16 H 0.036 0.964 17 C -0.144 4.144 18 H 0.097 0.903 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.353 4.353 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.006 3.994 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.107 0.893 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.112 12.368 -8.043 22.593 hybrid contribution -0.861 -0.475 -0.527 1.115 sum 16.251 11.893 -8.570 21.885 Atomic orbital electron populations 1.20883 0.91298 1.02616 1.02824 1.19701 0.95929 0.92551 0.98435 1.20935 0.94247 0.97247 1.02069 1.21056 0.94283 0.97798 1.00183 1.20920 0.99471 0.91962 1.02252 1.19674 0.92935 0.95426 0.98794 1.20825 0.99975 0.94501 1.01997 1.18988 0.92729 0.93227 1.01446 1.20817 1.02216 0.96208 0.95609 1.20430 0.77873 0.80459 0.90956 1.90694 1.50997 1.53303 1.46410 1.48338 1.55723 1.22483 1.07668 1.21819 0.96254 0.94954 0.88341 1.21898 0.93831 1.01443 0.99776 1.20618 0.89531 0.92353 0.91568 0.96381 1.22613 0.94136 0.99413 0.98210 0.90269 1.22715 1.00039 0.99026 0.95734 1.21527 0.92465 0.97438 0.83270 1.44213 1.13224 1.71016 1.03484 1.19028 0.93731 1.32467 0.90082 0.90339 1.24800 0.98080 1.01584 0.96029 1.69956 1.25016 1.52261 1.09613 0.86084 0.81881 0.78577 0.79453 1.20526 1.21799 1.21811 1.21578 0.96028 1.00261 0.81575 0.90767 0.91522 0.91370 0.86259 0.86310 0.86321 0.91130 0.91470 0.91582 0.88082 0.87709 0.91600 0.90327 0.90515 0.91399 0.92094 0.92359 0.92771 0.94357 0.93799 0.89330 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.60 36.01 0.35 -0.90 16 2 C -0.07 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.33 9.70 -39.58 -0.38 -1.72 16 6 C -0.07 -0.77 5.88 -104.62 -0.62 -1.39 16 7 C -0.12 -1.07 9.19 36.01 0.33 -0.74 16 8 C -0.06 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.11 -1.19 3.07 -29.03 -0.09 -1.28 16 10 C 0.52 7.28 7.26 -10.98 -0.08 7.20 16 11 O -0.54 -9.49 15.39 5.56 0.09 -9.40 16 12 N -0.61 -8.45 3.00 -172.51 -0.52 -8.97 16 13 C 0.11 1.34 6.21 -3.49 -0.02 1.32 16 14 C -0.13 -2.08 5.49 -26.98 -0.15 -2.23 16 15 C 0.17 3.24 2.57 -67.99 -0.17 3.06 16 16 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 17 C -0.12 -2.16 2.86 -89.39 -0.26 -2.42 16 18 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 19 C -0.14 -2.51 6.54 -25.13 -0.16 -2.68 16 20 C 0.18 4.22 5.45 -1.91 -0.01 4.21 16 21 N -0.59 -14.54 3.35 -163.10 -0.55 -15.08 16 22 C -0.22 -6.00 9.88 -15.06 -0.15 -6.14 16 23 H 0.08 2.00 7.22 -52.49 -0.38 1.62 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 25 N -0.92 -26.70 10.44 55.49 0.58 -26.12 16 26 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 C 0.13 1.93 5.95 -3.78 -0.02 1.91 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.65 5.94 -51.93 -0.31 0.34 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.07 0.67 6.37 -51.93 -0.33 0.34 16 40 H 0.10 0.89 6.55 -51.93 -0.34 0.55 16 41 H 0.10 1.00 5.34 -51.93 -0.28 0.72 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.75 5.83 -51.93 -0.30 0.44 16 44 H 0.08 1.24 7.62 -51.93 -0.40 0.84 16 45 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 48 H 0.05 1.44 7.23 -51.93 -0.38 1.06 16 49 H 0.04 1.00 7.76 -51.93 -0.40 0.60 16 50 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 51 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 52 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -32.25 396.63 -11.34 -43.59 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.51 Total: 1.41 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.39 Total: -8.04 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.48 Total: -50.18 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.25 -11.34 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.299 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds