Wall clock time and date at job start Wed Apr 1 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 119.99914 * 2 1 4 4 C 1.38236 * 119.99755 * 180.24875 * 3 2 1 5 5 C 1.38241 * 120.00143 * 359.79216 * 4 3 2 6 6 C 1.38235 * 119.99896 * 359.95195 * 5 4 3 7 7 C 1.50701 * 120.00034 * 180.02562 * 6 5 4 8 8 C 1.38230 * 120.00035 * 179.76131 * 2 1 3 9 9 C 1.50708 * 119.99992 * 0.02562 * 8 2 1 10 10 C 1.50705 * 109.46608 * 269.72572 * 9 8 2 11 11 O 1.21280 * 119.99853 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99529 * 180.02562 * 10 9 8 13 13 C 1.46597 * 119.68592 * 359.97438 * 12 10 9 14 14 C 1.53959 * 110.57576 * 227.84716 * 13 12 10 15 15 C 1.51516 * 107.34584 * 308.94916 * 14 13 12 16 16 H 1.09004 * 108.80318 * 306.55370 * 15 14 13 17 17 C 1.55357 * 107.79455 * 64.85807 * 15 14 13 18 18 H 1.08996 * 111.51380 * 51.18593 * 17 15 14 19 19 C 1.53748 * 100.21926 * 169.08590 * 17 15 14 20 20 C 1.55288 * 101.84078 * 320.90320 * 19 17 15 21 21 N 1.45467 * 117.34550 * 181.90934 * 15 14 13 22 22 C 1.36932 * 126.40872 * 30.88502 * 21 15 14 23 23 H 1.08002 * 119.99998 * 359.71043 * 22 21 15 24 24 C 1.38810 * 120.00253 * 179.70867 * 22 21 15 25 25 N 1.31626 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46656 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47194 * 120.00119 * 26 24 22 29 29 H 1.48496 * 109.46961 * 240.00040 * 26 24 22 30 30 C 1.47722 * 119.68080 * 180.02562 * 12 10 9 31 31 H 1.08993 * 109.47474 * 270.23758 * 1 2 3 32 32 H 1.09002 * 109.47082 * 30.23849 * 1 2 3 33 33 H 1.08999 * 109.47383 * 150.23485 * 1 2 3 34 34 H 1.07999 * 120.00376 * 0.02562 * 3 2 1 35 35 H 1.07996 * 120.00335 * 179.76284 * 4 3 2 36 36 H 1.07998 * 120.00249 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47038 * 270.02270 * 7 6 5 38 38 H 1.09002 * 109.46766 * 30.02719 * 7 6 5 39 39 H 1.09004 * 109.46929 * 150.02260 * 7 6 5 40 40 H 1.08994 * 109.46893 * 149.72387 * 9 8 2 41 41 H 1.08993 * 109.47046 * 29.71950 * 9 8 2 42 42 H 1.09003 * 109.25632 * 107.56789 * 13 12 10 43 43 H 1.08996 * 109.22651 * 348.11170 * 13 12 10 44 44 H 1.08993 * 109.87973 * 189.48543 * 14 13 12 45 45 H 1.08996 * 109.94113 * 68.44032 * 14 13 12 46 46 H 1.09000 * 110.95285 * 202.77199 * 19 17 15 47 47 H 1.08994 * 110.99021 * 79.05655 * 19 17 15 48 48 H 1.08998 * 109.92258 * 263.13469 * 20 19 17 49 49 H 1.08998 * 109.92218 * 141.83292 * 20 19 17 50 50 H 0.97005 * 119.99956 * 179.97438 * 25 24 22 51 51 H 1.08997 * 110.07017 * 8.70660 * 30 12 10 52 52 H 1.09000 * 110.06560 * 247.12940 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2718 -0.0001 -0.0061 6 6 3.5806 -1.1972 -0.0007 7 6 4.3341 -2.5023 -0.0011 8 6 2.1982 -1.1971 0.0050 9 6 1.4446 -2.5023 0.0098 10 6 1.1989 -2.9350 1.4324 11 8 1.5969 -2.2512 2.3515 12 7 0.5377 -4.0824 1.6829 13 6 0.0603 -4.9038 0.5665 14 6 -1.4081 -5.3120 0.7843 15 6 -1.5104 -5.9061 2.1744 16 1 -0.7700 -6.7000 2.2726 17 6 -1.1911 -4.7804 3.1965 18 1 -1.7876 -3.8880 3.0075 19 6 -1.6160 -5.4700 4.5033 20 6 -2.8963 -6.2295 4.0612 21 7 -2.8102 -6.4076 2.5928 22 6 -3.7720 -6.9487 1.7820 23 1 -3.5991 -7.0297 0.7190 24 6 -4.9690 -7.3932 2.3264 25 7 -5.1799 -7.2941 3.6219 26 14 -6.2813 -8.1308 1.2202 27 1 -5.8024 -8.1282 -0.1854 28 1 -6.5600 -9.5261 1.6452 29 1 -7.5244 -7.3248 1.3218 30 6 0.3002 -4.4996 3.0799 31 1 -0.3634 0.0043 1.0276 32 1 -0.3633 0.8879 -0.5175 33 1 -0.3634 -0.8921 -0.5102 34 1 1.6582 2.1325 0.0004 35 1 4.1206 2.1324 -0.0091 36 1 5.3517 -0.0001 -0.0105 37 1 4.5118 -2.8189 -1.0287 38 1 5.2884 -2.3710 0.5090 39 1 3.7468 -3.2610 0.5165 40 1 2.0318 -3.2626 -0.5050 41 1 0.4903 -2.3727 -0.5005 42 1 0.6753 -5.8007 0.4913 43 1 0.1414 -4.3338 -0.3590 44 1 -1.7007 -6.0541 0.0416 45 1 -2.0527 -4.4364 0.7071 46 1 -1.8456 -4.7352 5.2750 47 1 -0.8491 -6.1649 4.8453 48 1 -3.7808 -5.6445 4.3130 49 1 -2.9391 -7.2021 4.5514 50 1 -6.0165 -7.6044 4.0022 51 1 0.5844 -3.6991 3.7629 52 1 0.8690 -5.4024 3.3025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036727642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:58 Heat of formation + Delta-G solvation = -4.888476 kcal Electronic energy + Delta-G solvation = -30771.921733 eV Core-core repulsion = 26928.744936 eV Total energy + Delta-G solvation = -3843.176798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.69922 -40.58549 -39.38050 -36.75987 -34.68974 -34.45879 -34.15314 -32.99557 -31.49986 -30.20338 -29.25079 -27.51213 -27.47505 -26.63934 -24.84626 -23.73580 -22.24492 -21.83229 -21.57486 -21.10494 -19.90977 -18.66742 -17.88714 -17.28009 -17.19047 -16.88857 -16.53670 -16.11628 -15.91235 -15.60387 -15.38620 -15.17420 -14.75417 -14.68561 -14.16475 -14.09756 -14.03766 -13.85598 -13.79249 -13.71026 -13.53163 -13.36461 -13.21511 -13.10330 -13.03305 -12.71736 -12.49995 -12.44931 -12.38236 -12.08483 -11.95691 -11.80382 -11.74754 -11.66775 -11.59327 -11.50068 -10.99798 -10.80208 -10.70952 -9.65766 -9.45891 -9.38942 -8.86355 -7.82373 -5.16722 0.45566 0.51756 1.47085 1.47536 1.57539 1.65065 2.01891 2.51488 2.85374 3.36975 3.45096 3.66673 3.73164 3.86597 3.89716 3.95766 4.01919 4.06200 4.12827 4.21016 4.24368 4.25210 4.41326 4.44356 4.48657 4.52619 4.57205 4.66720 4.73224 4.76980 4.79673 4.80220 4.83888 4.84495 4.87661 4.93509 4.99816 5.01454 5.06388 5.09405 5.24348 5.31446 5.37019 5.48251 5.55713 5.58093 5.63019 5.66584 5.68375 5.76976 5.78556 6.18950 6.21677 6.44024 7.10277 7.20313 7.80875 8.49924 9.29999 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002555 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.078978 B =10954.246581 C =11294.008484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.114 4.114 8 C -0.084 4.084 9 C -0.103 4.103 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.610 5.610 13 C 0.116 3.884 14 C -0.125 4.125 15 C 0.158 3.842 16 H 0.022 0.978 17 C -0.108 4.108 18 H 0.060 0.940 19 C -0.123 4.123 20 C 0.183 3.817 21 N -0.616 5.616 22 C -0.225 4.225 23 H 0.090 0.910 24 C -0.073 4.073 25 N -0.956 5.956 26 Si 0.974 3.026 27 H -0.260 1.260 28 H -0.297 1.297 29 H -0.297 1.297 30 C 0.136 3.864 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.015 0.985 49 H 0.004 0.996 50 H 0.244 0.756 51 H 0.081 0.919 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.403 12.622 -11.040 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.157 4.157 6 C -0.083 4.083 7 C -0.171 4.171 8 C -0.084 4.084 9 C -0.142 4.142 10 C 0.306 3.694 11 O -0.456 6.456 12 N -0.342 5.342 13 C -0.006 4.006 14 C -0.164 4.164 15 C 0.051 3.949 16 H 0.040 0.960 17 C -0.128 4.128 18 H 0.079 0.921 19 C -0.162 4.162 20 C 0.058 3.942 21 N -0.340 5.340 22 C -0.354 4.354 23 H 0.108 0.892 24 C -0.266 4.266 25 N -0.606 5.606 26 Si 0.803 3.197 27 H -0.184 1.184 28 H -0.224 1.224 29 H -0.225 1.225 30 C 0.014 3.986 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.033 0.967 49 H 0.022 0.978 50 H 0.053 0.947 51 H 0.100 0.900 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.410 12.852 -10.579 25.570 hybrid contribution -1.511 -0.577 0.270 1.639 sum 17.899 12.276 -10.309 24.028 Atomic orbital electron populations 1.20872 0.90855 1.03783 1.01885 1.19974 0.96563 0.93114 0.98939 1.21229 0.94893 0.97688 1.02101 1.21396 0.94294 0.98836 0.99326 1.21252 1.00629 0.91909 1.01897 1.20022 0.93086 0.96629 0.98572 1.20846 0.99756 0.93256 1.03207 1.19203 0.93319 0.93643 1.02270 1.20845 1.03369 0.96551 0.93407 1.20969 0.76848 0.79620 0.91953 1.90679 1.52616 1.54329 1.47946 1.48391 1.55653 1.22786 1.07404 1.21919 0.93533 0.96199 0.88988 1.21832 0.96545 1.00616 0.97374 1.20869 0.87000 0.92801 0.94254 0.96011 1.22437 0.95790 0.97840 0.96782 0.92123 1.22587 0.97757 0.99140 0.96683 1.21279 0.93752 0.95668 0.83522 1.44507 1.14708 1.71135 1.03656 1.19464 0.94034 1.30970 0.90917 0.89183 1.25643 1.00506 1.03100 0.97304 1.70184 1.25093 1.53972 1.11375 0.85062 0.78905 0.77002 0.78742 1.18379 1.22397 1.22481 1.21395 0.93839 1.00661 0.82751 0.92650 0.90013 0.90646 0.84879 0.84126 0.84435 0.89134 0.90908 0.92450 0.85492 0.86205 0.89547 0.86773 0.90402 0.92707 0.90755 0.90399 0.96680 0.97811 0.94700 0.90025 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.60 71.24 0.68 -1.62 16 2 C -0.09 -1.91 5.88 -19.87 -0.12 -2.02 16 3 C -0.14 -2.84 9.70 22.27 0.22 -2.62 16 4 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 5 C -0.14 -2.61 9.70 22.27 0.22 -2.40 16 6 C -0.08 -1.70 5.88 -19.86 -0.12 -1.82 16 7 C -0.11 -1.80 9.19 71.24 0.65 -1.14 16 8 C -0.08 -1.85 4.37 -19.86 -0.09 -1.94 16 9 C -0.10 -1.94 3.07 29.11 0.09 -1.85 16 10 C 0.52 13.47 7.26 87.66 0.64 14.11 16 11 O -0.58 -19.76 15.39 -3.03 -0.05 -19.81 16 12 N -0.61 -15.34 3.00 -818.09 -2.45 -17.80 16 13 C 0.12 2.41 6.21 86.68 0.54 2.95 16 14 C -0.12 -3.72 5.49 30.43 0.17 -3.55 16 15 C 0.16 5.93 2.57 45.51 0.12 6.05 16 16 H 0.02 0.84 7.92 -2.38 -0.02 0.82 16 17 C -0.11 -3.72 2.86 -10.00 -0.03 -3.75 16 18 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 19 C -0.12 -4.53 6.54 31.63 0.21 -4.33 16 20 C 0.18 9.06 5.45 86.84 0.47 9.54 16 21 N -0.62 -30.53 3.35 -669.92 -2.24 -32.77 16 22 C -0.22 -12.08 9.88 84.03 0.83 -11.25 16 23 H 0.09 4.51 7.22 -2.91 -0.02 4.49 16 24 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 25 N -0.96 -57.89 10.44 21.65 0.23 -57.67 16 26 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 30 C 0.14 3.88 5.95 85.88 0.51 4.39 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.07 1.31 5.94 -2.39 -0.01 1.29 16 34 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.06 1.00 6.37 -2.39 -0.02 0.98 16 40 H 0.13 1.71 6.55 -2.39 -0.02 1.70 16 41 H 0.12 1.88 5.34 -2.39 -0.01 1.87 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 1.62 5.83 -2.39 -0.01 1.61 16 44 H 0.08 2.32 7.62 -2.39 -0.02 2.30 16 45 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 46 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 48 H 0.01 0.84 7.23 -2.39 -0.02 0.83 16 49 H 0.00 0.20 7.76 -2.39 -0.02 0.18 16 50 H 0.24 14.43 8.31 -92.70 -0.77 13.66 16 51 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 52 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 Total: -1.00 -73.28 396.63 4.09 -69.19 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.90 Total: 18.53 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.68 Total: -6.89 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.47 Total: -108.24 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.28 4.09 -69.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.297 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds