Wall clock time and date at job start Wed Apr 1 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38252 * 119.99924 * 264.99969 * 3 2 1 5 5 C 1.38218 * 119.99555 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00377 * 0.02730 * 5 4 3 7 7 C 1.38216 * 120.00199 * 359.94939 * 6 5 4 8 8 C 1.38214 * 119.99701 * 84.72607 * 3 2 1 9 9 C 1.50703 * 120.00239 * 359.97438 * 8 3 2 10 10 C 1.50699 * 109.47159 * 84.99688 * 9 8 3 11 11 O 1.21283 * 120.00068 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99809 * 179.97438 * 10 9 8 13 13 C 1.46597 * 119.68565 * 0.02562 * 12 10 9 14 14 C 1.53958 * 110.57581 * 132.14826 * 13 12 10 15 15 C 1.51514 * 107.34901 * 51.05097 * 14 13 12 16 16 H 1.09005 * 109.27406 * 53.02819 * 15 14 13 17 17 C 1.55365 * 107.79648 * 295.14500 * 15 14 13 18 18 H 1.08998 * 111.50967 * 308.81239 * 17 15 14 19 19 C 1.53744 * 100.21672 * 190.91034 * 17 15 14 20 20 C 1.55289 * 101.84464 * 39.09281 * 19 17 15 21 21 N 1.45466 * 117.35080 * 178.08919 * 15 14 13 22 22 C 1.36933 * 126.40621 * 329.34355 * 21 15 14 23 23 H 1.08003 * 120.00298 * 0.02562 * 22 21 15 24 24 C 1.38813 * 119.99756 * 179.97438 * 22 21 15 25 25 N 1.31615 * 120.00258 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99937 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47177 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47231 * 120.00345 * 26 24 22 29 29 H 1.48501 * 109.47108 * 240.00096 * 26 24 22 30 30 C 1.47718 * 119.68221 * 179.72502 * 12 10 9 31 31 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 33 33 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 35 35 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 36 36 H 1.07998 * 120.00296 * 0.02562 * 4 3 2 37 37 H 1.08003 * 119.99734 * 179.97438 * 5 4 3 38 38 H 1.08002 * 120.00396 * 179.97438 * 6 5 4 39 39 H 1.07996 * 120.00563 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.47055 * 204.99590 * 9 8 3 41 41 H 1.08998 * 109.46978 * 324.99737 * 9 8 3 42 42 H 1.09002 * 109.25478 * 252.43024 * 13 12 10 43 43 H 1.08997 * 109.25636 * 11.86585 * 13 12 10 44 44 H 1.08999 * 109.87793 * 170.51854 * 14 13 12 45 45 H 1.09000 * 109.87861 * 291.51520 * 14 13 12 46 46 H 1.08996 * 110.95255 * 280.95261 * 19 17 15 47 47 H 1.09002 * 110.94845 * 157.23265 * 19 17 15 48 48 H 1.08994 * 109.91732 * 218.16810 * 20 19 17 49 49 H 1.09006 * 110.08456 * 96.95890 * 20 19 17 50 50 H 0.97003 * 119.99970 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.07222 * 351.29843 * 30 12 10 52 52 H 1.08998 * 110.06791 * 112.87765 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0377 -1.1928 5 6 2.8214 3.3410 -1.1927 6 6 2.9535 4.0275 0.0000 7 6 2.6243 3.4110 1.1924 8 6 2.1589 2.1090 1.1919 9 6 1.7941 1.4387 2.4915 10 6 2.9706 0.6419 2.9934 11 8 4.0039 0.6208 2.3586 12 7 2.8750 -0.0463 4.1482 13 6 1.6230 -0.0155 4.9102 14 6 1.2041 -1.4390 5.3204 15 6 2.4017 -2.0893 5.9826 16 1 2.7659 -1.4433 6.7816 17 6 3.5180 -2.2308 4.9112 18 1 3.1454 -2.7122 4.0071 19 6 4.5037 -3.1402 5.6629 20 6 3.5426 -4.1180 6.3922 21 7 2.2300 -3.4390 6.4972 22 6 1.0718 -3.9804 6.9877 23 1 0.1689 -3.3886 7.0168 24 6 1.0581 -5.2905 7.4466 25 7 2.1583 -6.0119 7.4107 26 14 -0.5219 -6.0294 8.1152 27 1 -1.6082 -5.0191 8.0478 28 1 -0.8965 -7.2148 7.3029 29 1 -0.3169 -6.4416 9.5271 30 6 4.0306 -0.8300 4.6305 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3635 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2576 1.5016 -2.1245 37 1 3.0787 3.8229 -2.1244 38 1 3.3135 5.0458 0.0001 39 1 2.7270 3.9473 2.1242 40 1 1.5273 2.1961 3.2285 41 1 0.9461 0.7729 2.3313 42 1 1.7620 0.5904 5.8055 43 1 0.8390 0.4269 4.2956 44 1 0.3719 -1.3925 6.0229 45 1 0.9125 -2.0084 4.4379 46 1 5.0942 -2.5679 6.3782 47 1 5.1492 -3.6752 4.9662 48 1 3.9258 -4.3417 7.3877 49 1 3.4395 -5.0391 5.8185 50 1 2.1488 -6.9273 7.7318 51 1 4.8058 -0.8632 3.8650 52 1 4.4256 -0.3891 5.5457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:36 Heat of formation + Delta-G solvation = -6.610530 kcal Electronic energy + Delta-G solvation = -30758.277580 eV Core-core repulsion = 26915.026108 eV Total energy + Delta-G solvation = -3843.251472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.67590 -40.52246 -39.36715 -36.76474 -35.21841 -34.58560 -33.52114 -32.98401 -31.41367 -30.38793 -29.87053 -28.29618 -26.66118 -25.03090 -24.57612 -23.74369 -22.91977 -21.90235 -21.62112 -21.07868 -19.94215 -18.66547 -17.85934 -17.41051 -17.10454 -16.92450 -16.62292 -16.13038 -15.89797 -15.83357 -15.59481 -15.08286 -14.74785 -14.69126 -14.43191 -14.21416 -14.16034 -13.91597 -13.82284 -13.77277 -13.33262 -13.14152 -13.10595 -12.96093 -12.80913 -12.69654 -12.64174 -12.45614 -12.15845 -12.06636 -11.95493 -11.78798 -11.67032 -11.60450 -11.54053 -11.49564 -10.99749 -10.80574 -10.70871 -9.66508 -9.64854 -9.44246 -8.86502 -7.82346 -5.16742 0.46208 0.55216 1.47055 1.47492 1.57496 1.64570 2.01795 2.51450 2.89741 3.36899 3.45070 3.67466 3.73251 3.86061 3.87229 3.95451 4.01119 4.06163 4.10454 4.22911 4.24866 4.32323 4.36191 4.42455 4.49122 4.51084 4.54137 4.65045 4.67448 4.72617 4.73137 4.77203 4.83973 4.85121 4.93281 5.03403 5.06219 5.08646 5.08853 5.18338 5.24008 5.26221 5.38996 5.48083 5.55373 5.57693 5.62824 5.66201 5.66727 5.77155 5.78855 6.17810 6.21726 6.43657 7.10217 7.19517 7.80806 8.49854 9.29966 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002648 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.071001 B =10569.792836 C =11186.322958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.515 3.485 11 O -0.577 6.577 12 N -0.610 5.610 13 C 0.116 3.884 14 C -0.124 4.124 15 C 0.158 3.842 16 H 0.022 0.978 17 C -0.109 4.109 18 H 0.060 0.940 19 C -0.122 4.122 20 C 0.182 3.818 21 N -0.615 5.615 22 C -0.225 4.225 23 H 0.090 0.910 24 C -0.073 4.073 25 N -0.956 5.956 26 Si 0.974 3.026 27 H -0.260 1.260 28 H -0.297 1.297 29 H -0.297 1.297 30 C 0.136 3.864 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.003 0.997 49 H 0.016 0.984 50 H 0.244 0.756 51 H 0.081 0.919 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 21.044 -13.959 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.135 4.135 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.304 3.696 11 O -0.457 6.457 12 N -0.342 5.342 13 C -0.006 4.006 14 C -0.163 4.163 15 C 0.051 3.949 16 H 0.040 0.960 17 C -0.130 4.130 18 H 0.078 0.922 19 C -0.161 4.161 20 C 0.057 3.943 21 N -0.340 5.340 22 C -0.354 4.354 23 H 0.108 0.892 24 C -0.265 4.265 25 N -0.606 5.606 26 Si 0.803 3.197 27 H -0.184 1.184 28 H -0.225 1.225 29 H -0.224 1.224 30 C 0.013 3.987 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.135 0.865 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.021 0.979 49 H 0.034 0.966 50 H 0.053 0.947 51 H 0.100 0.900 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.843 20.858 -14.167 25.282 hybrid contribution -0.360 -1.443 0.685 1.637 sum -2.203 19.415 -13.482 23.740 Atomic orbital electron populations 1.21741 0.93197 1.02346 1.02675 1.20540 0.97254 0.92458 1.02203 1.19889 0.98755 0.96006 0.93248 1.21239 1.00332 0.95850 0.97661 1.21417 0.99185 0.94633 0.99055 1.21382 1.00472 1.00954 0.92373 1.21251 0.98581 0.94507 0.99184 1.19342 1.00567 0.94545 0.93475 1.20850 0.96580 1.00470 0.96131 1.21025 0.89690 0.79270 0.79583 1.90682 1.32820 1.64767 1.57384 1.48390 1.14616 1.48169 1.23037 1.21918 0.85140 0.96224 0.97358 1.21814 0.98333 0.95805 1.00317 1.20872 0.94805 0.86408 0.92819 0.96024 1.22376 0.97615 0.95110 0.97882 0.92187 1.22582 0.96958 0.97590 0.98993 1.21285 0.84011 0.93046 0.95923 1.44505 1.06869 1.10195 1.72408 1.19464 0.88450 0.95328 1.32140 0.89181 1.25640 1.00248 0.97594 1.03057 1.70179 1.27579 1.08892 1.53968 0.85065 0.79539 0.78212 0.76909 1.18374 1.22467 1.22406 1.21305 0.88355 0.88991 1.00014 0.91907 0.91820 0.91927 0.91080 0.92962 0.85083 0.84162 0.84152 0.84889 0.85269 0.86479 0.89577 0.86745 0.90385 0.92693 0.90407 0.90736 0.97863 0.96583 0.94696 0.90019 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.72 71.98 0.70 -1.61 16 2 C -0.09 -1.80 5.38 29.85 0.16 -1.64 16 3 C -0.08 -1.72 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.61 9.68 22.27 0.22 -2.40 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 6 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 7 C -0.12 -2.27 9.68 22.27 0.22 -2.06 16 8 C -0.08 -1.68 4.37 -19.86 -0.09 -1.77 16 9 C -0.10 -1.87 3.49 29.10 0.10 -1.77 16 10 C 0.51 13.43 6.87 87.66 0.60 14.03 16 11 O -0.58 -19.75 15.39 -3.04 -0.05 -19.79 16 12 N -0.61 -15.42 3.01 -818.87 -2.46 -17.89 16 13 C 0.12 2.42 6.21 86.68 0.54 2.96 16 14 C -0.12 -3.70 5.48 30.43 0.17 -3.53 16 15 C 0.16 5.96 2.58 45.51 0.12 6.08 16 16 H 0.02 0.84 7.90 -2.38 -0.02 0.82 16 17 C -0.11 -3.77 2.84 -10.13 -0.03 -3.80 16 18 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 19 C -0.12 -4.53 6.54 31.63 0.21 -4.32 16 20 C 0.18 9.05 5.46 86.85 0.47 9.53 16 21 N -0.62 -30.55 3.35 -669.91 -2.24 -32.79 16 22 C -0.22 -12.09 9.88 84.03 0.83 -11.26 16 23 H 0.09 4.51 7.21 -2.91 -0.02 4.49 16 24 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 25 N -0.96 -57.90 10.43 21.65 0.23 -57.67 16 26 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 C 0.14 3.90 5.92 85.75 0.51 4.41 16 31 H 0.06 0.93 6.77 -2.39 -0.02 0.91 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 35 H 0.05 1.28 6.43 -2.39 -0.02 1.27 16 36 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.13 1.61 7.90 -2.39 -0.02 1.59 16 41 H 0.12 1.87 5.00 -2.39 -0.01 1.86 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.63 5.83 -2.39 -0.01 1.62 16 44 H 0.08 2.33 7.62 -2.39 -0.02 2.31 16 45 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 46 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.00 0.17 7.77 -2.39 -0.02 0.16 16 49 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 50 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 51 H 0.08 2.51 7.00 -2.38 -0.02 2.50 16 52 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -72.71 398.11 3.93 -68.78 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.90 Total: 18.85 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.53 Total: -6.72 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.48 Total: -108.35 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.71 3.93 -68.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.173 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds