Wall clock time and date at job start Wed Apr 1 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.46979 * 2 1 4 4 C 1.38257 * 120.00300 * 265.02231 * 3 2 1 5 5 C 1.38206 * 120.00321 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00141 * 0.02562 * 5 4 3 7 7 C 1.38220 * 119.99656 * 359.95211 * 6 5 4 8 8 C 1.38214 * 119.99757 * 85.00460 * 3 2 1 9 9 C 1.50691 * 120.00181 * 359.97438 * 8 3 2 10 10 C 1.50697 * 109.47494 * 85.02078 * 9 8 3 11 11 O 1.21285 * 119.99685 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00288 * 179.97438 * 10 9 8 13 13 C 1.46597 * 119.68393 * 0.02562 * 12 10 9 14 14 C 1.53957 * 110.57448 * 227.82728 * 13 12 10 15 15 C 1.51521 * 107.34462 * 308.94159 * 14 13 12 16 16 H 1.08994 * 109.28150 * 306.98109 * 15 14 13 17 17 C 1.55369 * 107.79277 * 64.85976 * 15 14 13 18 18 H 1.09003 * 111.50765 * 51.18950 * 17 15 14 19 19 C 1.53745 * 100.21876 * 169.08645 * 17 15 14 20 20 C 1.55290 * 101.84142 * 320.90953 * 19 17 15 21 21 N 1.45464 * 117.35142 * 181.91370 * 15 14 13 22 22 C 1.36936 * 126.40787 * 30.59832 * 21 15 14 23 23 H 1.07999 * 120.00113 * 353.06872 * 22 21 15 24 24 C 1.38817 * 120.00138 * 173.07448 * 22 21 15 25 25 N 1.31625 * 119.99952 * 5.78100 * 24 22 21 26 26 Si 1.86801 * 119.99959 * 185.78731 * 24 22 21 27 27 H 1.48496 * 109.47339 * 94.98351 * 26 24 22 28 28 H 1.48498 * 109.46698 * 214.98363 * 26 24 22 29 29 H 1.48500 * 109.46915 * 334.98081 * 26 24 22 30 30 C 1.47722 * 119.68300 * 179.73105 * 12 10 9 31 31 H 1.08998 * 109.46818 * 59.99594 * 1 2 3 32 32 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46970 * 300.00132 * 1 2 3 34 34 H 1.09008 * 109.46865 * 240.00135 * 2 1 3 35 35 H 1.09000 * 109.47487 * 120.00086 * 2 1 3 36 36 H 1.08004 * 120.00046 * 359.97438 * 4 3 2 37 37 H 1.07999 * 120.00409 * 180.02562 * 5 4 3 38 38 H 1.08003 * 120.00734 * 180.02562 * 6 5 4 39 39 H 1.08003 * 119.99737 * 180.32679 * 7 6 5 40 40 H 1.09004 * 109.47646 * 205.02515 * 9 8 3 41 41 H 1.09000 * 109.47372 * 325.01852 * 9 8 3 42 42 H 1.08994 * 109.25544 * 348.10395 * 13 12 10 43 43 H 1.08992 * 109.25923 * 107.54367 * 13 12 10 44 44 H 1.08997 * 109.88417 * 68.39954 * 14 13 12 45 45 H 1.09002 * 109.88089 * 189.41101 * 14 13 12 46 46 H 1.08995 * 110.95508 * 202.77110 * 19 17 15 47 47 H 1.09000 * 110.98181 * 79.05791 * 19 17 15 48 48 H 1.09004 * 109.91944 * 263.12783 * 20 19 17 49 49 H 1.09001 * 110.08800 * 141.92398 * 20 19 17 50 50 H 0.96995 * 119.99647 * 180.02562 * 25 24 22 51 51 H 1.08998 * 110.06855 * 247.15083 * 30 12 10 52 52 H 1.08994 * 110.06841 * 8.73208 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1928 5 6 2.8209 3.3412 -1.1928 6 6 2.9533 4.0276 0.0000 7 6 2.6246 3.4108 1.1924 8 6 2.1644 2.1070 1.1925 9 6 1.8056 1.4347 2.4925 10 6 2.9845 0.6376 2.9880 11 8 4.0150 0.6179 2.3487 12 7 2.8943 -0.0524 4.1422 13 6 1.6456 -0.0232 4.9097 14 6 1.9306 0.2600 6.3959 15 6 2.9971 -0.7179 6.8457 16 1 2.6830 -1.7319 6.5984 17 6 4.2982 -0.3959 6.0600 18 1 4.5537 0.6617 6.1262 19 6 5.3052 -1.2633 6.8329 20 6 4.8258 -1.0790 8.2984 21 7 3.4034 -0.6683 8.2416 22 6 2.6183 -0.3088 9.3043 23 1 1.6254 0.0810 9.1348 24 6 3.0985 -0.4452 10.5996 25 7 4.3461 -0.8115 10.8038 26 14 1.9740 -0.1090 12.0529 27 1 1.3733 -1.3844 12.5194 28 1 2.7595 0.5008 13.1557 29 1 0.8954 0.8239 11.6387 30 6 4.0523 -0.8362 4.6183 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 2.2576 1.5017 -2.1246 37 1 3.0770 3.8235 -2.1246 38 1 3.3125 5.0462 0.0000 39 1 2.7231 3.9487 2.1237 40 1 1.5415 2.1908 3.2319 41 1 0.9571 0.7688 2.3351 42 1 0.9979 0.7583 4.5127 43 1 1.1441 -0.9865 4.8171 44 1 2.2903 1.2819 6.5163 45 1 1.0227 0.1153 6.9816 46 1 6.3209 -0.8891 6.7050 47 1 5.2354 -2.3076 6.5283 48 1 5.4167 -0.3047 8.7878 49 1 4.9197 -2.0180 8.8439 50 1 4.6815 -0.9072 11.7089 51 1 3.8230 -1.9012 4.5832 52 1 4.9275 -0.6204 4.0055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:40 Heat of formation + Delta-G solvation = -6.869945 kcal Electronic energy + Delta-G solvation = -30577.633082 eV Core-core repulsion = 26734.370362 eV Total energy + Delta-G solvation = -3843.262721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.66321 -40.51348 -39.36434 -36.76160 -35.20174 -34.57370 -33.52239 -32.97184 -31.40344 -30.38185 -29.85773 -28.29248 -26.65580 -25.02327 -24.56735 -23.74620 -22.92809 -21.89791 -21.59879 -21.08113 -19.95313 -18.65920 -17.85628 -17.38390 -17.14482 -16.92534 -16.62267 -16.08704 -15.96599 -15.79239 -15.59315 -15.08166 -14.74266 -14.67105 -14.39969 -14.22983 -14.14729 -13.92871 -13.83485 -13.71034 -13.34918 -13.21389 -13.09440 -12.92814 -12.80153 -12.67700 -12.62218 -12.45615 -12.15666 -12.05413 -11.98484 -11.77634 -11.65998 -11.62333 -11.52839 -11.48928 -10.99692 -10.80744 -10.69146 -9.67109 -9.65052 -9.44301 -8.85315 -7.84041 -5.17629 0.45727 0.54435 1.46729 1.48325 1.56775 1.64272 2.01647 2.51274 2.89142 3.35902 3.44892 3.67335 3.73316 3.86681 3.88355 3.94752 4.01652 4.05033 4.12315 4.22648 4.24521 4.32794 4.36036 4.41307 4.50533 4.52210 4.54862 4.65701 4.66986 4.73313 4.75359 4.77290 4.83956 4.85220 4.93114 5.04305 5.06619 5.08733 5.11554 5.19984 5.24075 5.26267 5.43371 5.48443 5.55515 5.57471 5.62715 5.65743 5.66677 5.75755 5.78283 6.17359 6.21381 6.43392 7.09676 7.19234 7.80365 8.50086 9.28968 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.002452 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.270804 B =11417.618144 C =11610.217664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.077 4.077 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.123 4.123 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.515 3.485 11 O -0.577 6.577 12 N -0.610 5.610 13 C 0.116 3.884 14 C -0.124 4.124 15 C 0.158 3.842 16 H 0.023 0.977 17 C -0.109 4.109 18 H 0.060 0.940 19 C -0.123 4.123 20 C 0.183 3.817 21 N -0.616 5.616 22 C -0.228 4.228 23 H 0.090 0.910 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.974 3.026 27 H -0.289 1.289 28 H -0.301 1.301 29 H -0.263 1.263 30 C 0.136 3.864 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.008 0.992 49 H 0.008 0.992 50 H 0.244 0.756 51 H 0.083 0.917 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.047 4.515 -24.460 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.077 4.077 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.304 3.696 11 O -0.456 6.456 12 N -0.342 5.342 13 C -0.006 4.006 14 C -0.163 4.163 15 C 0.051 3.949 16 H 0.040 0.960 17 C -0.130 4.130 18 H 0.079 0.921 19 C -0.162 4.162 20 C 0.058 3.942 21 N -0.340 5.340 22 C -0.357 4.357 23 H 0.108 0.892 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.188 1.188 30 C 0.013 3.987 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.054 0.946 51 H 0.101 0.899 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.540 4.504 -24.554 26.384 hybrid contribution 0.255 0.139 1.678 1.703 sum -8.284 4.643 -22.876 24.769 Atomic orbital electron populations 1.21751 0.93089 1.02613 1.02537 1.20564 0.97284 0.91937 1.02585 1.19932 0.98532 0.96411 0.92845 1.21264 1.00107 0.95641 0.97854 1.21415 0.99223 0.94862 0.98800 1.21358 1.00632 1.00900 0.92520 1.21239 0.98994 0.94889 0.98958 1.19333 1.00529 0.94322 0.93728 1.20842 0.96871 1.00448 0.95847 1.21010 0.89651 0.78833 0.80066 1.90683 1.32877 1.64477 1.57604 1.48393 1.15044 1.48390 1.22402 1.21911 0.84603 1.04343 0.89746 1.21823 0.99592 0.99084 0.95839 1.20871 0.93866 0.96374 0.83803 0.95982 1.22570 0.97068 0.98970 0.94381 0.92134 1.22583 0.98583 0.99950 0.95042 1.21279 0.84370 0.96375 0.92190 1.44502 1.08672 1.78779 1.02046 1.19432 0.96959 1.34450 0.84877 0.89240 1.25670 0.97889 1.02713 1.00133 1.70183 1.15201 1.55476 1.19574 0.85114 0.78049 0.77534 0.79029 1.21627 1.22771 1.18755 1.21513 0.89122 0.95336 0.92681 0.92150 0.91251 0.92074 0.90730 0.92376 0.84646 0.84145 0.84578 0.85738 0.86242 0.85601 0.86724 0.89566 0.92765 0.90355 0.90732 0.90374 0.97345 0.97339 0.94645 0.89920 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.72 71.98 0.70 -1.05 16 2 C -0.09 -1.47 5.38 29.85 0.16 -1.31 16 3 C -0.08 -1.57 5.13 -19.87 -0.10 -1.67 16 4 C -0.13 -2.43 9.68 22.27 0.22 -2.21 16 5 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.14 -2.59 10.05 22.27 0.22 -2.36 16 7 C -0.12 -2.61 9.68 22.27 0.22 -2.40 16 8 C -0.08 -1.69 4.37 -19.87 -0.09 -1.78 16 9 C -0.10 -1.88 3.49 29.10 0.10 -1.78 16 10 C 0.51 13.41 6.87 87.66 0.60 14.01 16 11 O -0.58 -19.70 15.39 -3.04 -0.05 -19.75 16 12 N -0.61 -15.38 2.99 -817.10 -2.44 -17.83 16 13 C 0.12 2.43 6.21 86.68 0.54 2.97 16 14 C -0.12 -3.73 5.45 30.43 0.17 -3.57 16 15 C 0.16 5.97 2.57 45.52 0.12 6.09 16 16 H 0.02 0.86 7.90 -2.39 -0.02 0.84 16 17 C -0.11 -3.78 2.88 -9.82 -0.03 -3.81 16 18 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 19 C -0.12 -4.54 6.54 31.63 0.21 -4.34 16 20 C 0.18 9.10 5.44 86.85 0.47 9.57 16 21 N -0.62 -30.66 3.35 -669.90 -2.24 -32.91 16 22 C -0.23 -12.32 9.89 84.03 0.83 -11.49 16 23 H 0.09 4.50 7.18 -2.91 -0.02 4.48 16 24 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 25 N -0.95 -57.91 10.48 21.65 0.23 -57.68 16 26 Si 0.97 45.24 29.56 68.60 2.03 47.27 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 30 C 0.14 3.88 5.98 86.06 0.51 4.40 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.70 6.80 -2.39 -0.02 0.68 16 34 H 0.07 1.18 8.05 -2.38 -0.02 1.16 16 35 H 0.06 1.14 6.42 -2.39 -0.02 1.13 16 36 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.12 1.79 7.46 -2.39 -0.02 1.77 16 41 H 0.13 1.74 5.47 -2.39 -0.01 1.72 16 42 H 0.11 1.63 5.83 -2.39 -0.01 1.62 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 45 H 0.08 2.35 7.64 -2.39 -0.02 2.33 16 46 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 48 H 0.01 0.47 7.46 -2.38 -0.02 0.45 16 49 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 50 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 52 H 0.08 2.51 6.99 -2.39 -0.02 2.50 16 Total: -1.00 -72.91 398.26 3.95 -68.96 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.90 Total: 18.20 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.54 Total: -6.27 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.46 Total: -108.41 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.91 3.95 -68.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.092 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds