Wall clock time and date at job start Wed Apr 1 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46568 * 2 1 4 4 C 1.38262 * 120.00639 * 265.18969 * 3 2 1 5 5 C 1.38211 * 120.00152 * 180.21188 * 4 3 2 6 6 C 1.38256 * 119.99819 * 359.85586 * 5 4 3 7 7 C 1.38205 * 120.00598 * 359.95470 * 6 5 4 8 8 C 1.38222 * 119.99797 * 85.00304 * 3 2 1 9 9 C 1.50697 * 120.00009 * 359.97438 * 8 3 2 10 10 C 1.50701 * 109.47190 * 84.72643 * 9 8 3 11 11 O 1.21278 * 119.99826 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46829 * 120.30281 * 359.97438 * 12 10 9 14 14 C 1.52957 * 107.40542 * 125.00503 * 13 12 10 15 15 C 1.53048 * 109.99817 * 61.45312 * 14 13 12 16 16 H 1.09000 * 110.19640 * 70.38171 * 15 14 13 17 17 C 1.51818 * 112.36603 * 307.07727 * 15 14 13 18 18 H 1.09001 * 105.95853 * 152.42307 * 17 15 14 19 19 C 1.53388 * 105.74358 * 264.32572 * 17 15 14 20 20 C 1.54467 * 102.53393 * 330.24005 * 19 17 15 21 21 N 1.46863 * 106.66819 * 27.72587 * 20 19 17 22 22 C 1.36937 * 125.34190 * 164.62890 * 21 20 19 23 23 H 1.08005 * 119.99858 * 180.02562 * 22 21 20 24 24 C 1.38809 * 119.99768 * 0.02562 * 22 21 20 25 25 N 1.31620 * 120.00039 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46787 * 90.00524 * 26 24 22 28 28 H 1.48504 * 109.47418 * 210.00350 * 26 24 22 29 29 H 1.48498 * 109.47410 * 330.00905 * 26 24 22 30 30 C 1.43457 * 120.27084 * 179.14128 * 12 10 9 31 31 H 1.08997 * 109.47398 * 59.99636 * 1 2 3 32 32 H 1.09003 * 109.46670 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47203 * 299.99196 * 1 2 3 34 34 H 1.09001 * 109.47203 * 240.00804 * 2 1 3 35 35 H 1.08997 * 109.47398 * 120.00363 * 2 1 3 36 36 H 1.07999 * 119.99337 * 0.04149 * 4 3 2 37 37 H 1.08000 * 119.99626 * 179.83588 * 5 4 3 38 38 H 1.08002 * 119.99586 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00511 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.47231 * 324.72519 * 9 8 3 41 41 H 1.09001 * 109.47284 * 204.72566 * 9 8 3 42 42 H 1.09000 * 109.86776 * 5.52667 * 13 12 10 43 43 H 1.09001 * 109.92872 * 244.51405 * 13 12 10 44 44 H 1.08994 * 109.38288 * 301.28940 * 14 13 12 45 45 H 1.09003 * 109.37930 * 181.61320 * 14 13 12 46 46 H 1.09007 * 110.79683 * 211.98322 * 19 17 15 47 47 H 1.08993 * 110.96228 * 88.57509 * 19 17 15 48 48 H 1.08995 * 110.02224 * 147.02678 * 20 19 17 49 49 H 1.09005 * 110.02017 * 268.42581 * 20 19 17 50 50 H 0.97005 * 119.99920 * 179.97438 * 25 24 22 51 51 H 1.08998 * 107.05265 * 94.80879 * 30 12 10 52 52 H 1.08999 * 108.42514 * 338.24937 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3573 2.0393 -1.1931 5 6 2.8220 3.3409 -1.1926 6 6 2.9590 4.0256 0.0007 7 6 2.6304 3.4088 1.1930 8 6 2.1642 2.1072 1.1925 9 6 1.8054 1.4348 2.4926 10 6 2.9820 0.6319 2.9844 11 8 4.0106 0.6078 2.3422 12 7 2.8911 -0.0600 4.1374 13 6 1.6489 -0.0359 4.9198 14 6 1.2120 -1.4866 5.1296 15 6 2.2824 -2.2472 5.9156 16 1 2.3078 -1.9009 6.9488 17 6 3.6587 -2.1223 5.2871 18 1 4.3723 -2.2321 6.1037 19 6 3.8323 -3.3711 4.4135 20 6 2.9776 -4.4215 5.1567 21 7 1.9247 -3.6827 5.8655 22 6 0.7897 -4.2350 6.3964 23 1 0.0696 -3.6084 6.9017 24 6 0.5647 -5.6002 6.2852 25 7 1.4426 -6.3639 5.6699 26 14 -0.9832 -6.3538 7.0100 27 1 -2.0626 -6.3446 5.9900 28 1 -0.7056 -7.7526 7.4243 29 1 -1.4121 -5.5634 8.1917 30 6 4.0013 -0.8409 4.6016 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.2506 1.5043 -2.1251 37 1 3.0784 3.8231 -2.1244 38 1 3.3225 5.0426 0.0011 39 1 2.7370 3.9438 2.1252 40 1 0.9536 0.7727 2.3362 41 1 1.5464 2.1911 3.2335 42 1 0.8779 0.5081 4.3742 43 1 1.8263 0.4407 5.8840 44 1 1.0668 -1.9643 4.1607 45 1 0.2740 -1.5053 5.6845 46 1 4.8779 -3.6772 4.3792 47 1 3.4475 -3.2003 3.4082 48 1 2.5316 -5.1131 4.4420 49 1 3.5948 -4.9678 5.8700 50 1 1.2855 -7.3180 5.5925 51 1 4.5625 -0.2168 5.2970 52 1 4.6440 -1.0661 3.7506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:46 Heat of formation + Delta-G solvation = 9.728733 kcal Electronic energy + Delta-G solvation = -31003.836372 eV Core-core repulsion = 27161.293424 eV Total energy + Delta-G solvation = -3842.542948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.65167 -39.50034 -38.05991 -35.41045 -34.40185 -33.08944 -32.47048 -31.64374 -29.84479 -29.50348 -28.49901 -27.38822 -25.06720 -23.98885 -23.49432 -22.72862 -22.07042 -20.79864 -20.23637 -19.56190 -17.99341 -17.18731 -16.89077 -16.55736 -16.21700 -15.58495 -15.23308 -15.01550 -14.81765 -14.52169 -13.97622 -13.81426 -13.73562 -13.51531 -13.27559 -13.20153 -13.02484 -12.89469 -12.59040 -12.25863 -12.17090 -11.97113 -11.85784 -11.72913 -11.53142 -11.34979 -11.33578 -11.02557 -10.86035 -10.84841 -10.76533 -10.73574 -10.15981 -10.07941 -9.80738 -9.74323 -9.61989 -9.46813 -8.85359 -8.64542 -8.62553 -8.38746 -6.86233 -5.69715 -3.07510 1.26689 1.34555 2.71952 3.17578 3.37414 3.42445 3.44691 3.72532 4.45200 4.52970 4.65651 4.67553 4.81679 4.87083 5.03871 5.06208 5.12783 5.13430 5.26493 5.29015 5.31923 5.37070 5.38951 5.42095 5.51255 5.51936 5.54838 5.63197 5.80346 5.86110 5.90876 5.93741 5.94553 6.00590 6.04318 6.08579 6.18485 6.24126 6.31266 6.39588 6.41103 6.42931 6.57593 6.60707 6.63548 6.82888 6.89322 6.94733 7.05581 7.53201 7.55168 7.63777 7.84505 8.29547 8.30918 9.20601 9.80833 10.45780 11.37605 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.002844 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.762108 B = 9843.693158 C =10442.237159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.060 4.060 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.127 4.127 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.106 4.106 10 C 0.515 3.485 11 O -0.537 6.537 12 N -0.598 5.598 13 C 0.102 3.898 14 C -0.140 4.140 15 C 0.174 3.826 16 H 0.039 0.961 17 C -0.105 4.105 18 H 0.065 0.935 19 C -0.135 4.135 20 C 0.167 3.833 21 N -0.599 5.599 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.133 3.867 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.018 0.982 50 H 0.252 0.748 51 H 0.048 0.952 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 18.810 -9.313 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.060 4.060 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.145 4.145 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.145 4.145 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.181 4.181 15 C 0.066 3.934 16 H 0.057 0.943 17 C -0.125 4.125 18 H 0.083 0.917 19 C -0.174 4.174 20 C 0.042 3.958 21 N -0.324 5.324 22 C -0.351 4.351 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 C 0.010 3.990 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.036 0.964 50 H 0.062 0.938 51 H 0.066 0.934 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.059 18.533 -9.586 20.893 hybrid contribution -0.750 -0.522 0.566 1.075 sum 0.309 18.011 -9.020 20.146 Atomic orbital electron populations 1.21766 0.94558 1.02148 1.01930 1.20584 0.96091 0.92685 1.03368 1.19711 0.97969 0.95756 0.92584 1.20981 1.00192 0.95184 0.97357 1.21079 0.99906 0.94859 0.97946 1.21028 1.01025 0.99872 0.92573 1.20949 0.98781 0.94502 0.98100 1.19154 0.99799 0.93968 0.93187 1.20775 0.98008 1.00015 0.95750 1.20408 0.89275 0.80008 0.79995 1.90700 1.31263 1.63461 1.55930 1.47235 1.15703 1.47103 1.22981 1.21879 0.85341 0.99189 0.95675 1.22412 1.00533 0.92770 1.02366 1.20420 0.90416 0.86997 0.95545 0.94342 1.20745 0.98825 0.94052 0.98848 0.91667 1.22677 1.00000 0.95952 0.98760 1.21382 0.88204 0.91484 0.94690 1.44702 1.21648 1.00411 1.65605 1.19000 0.96025 0.91047 1.29075 0.90524 1.24792 0.98547 0.96163 1.01036 1.69935 1.35029 1.04553 1.47371 0.86132 0.82528 0.78598 0.78572 1.21644 1.21725 1.20757 1.19906 0.88287 0.91432 0.99407 0.92606 0.91981 0.92541 0.90971 0.90830 0.86250 0.86352 0.86319 0.86343 0.87606 0.88209 0.90248 0.91249 0.91361 0.91088 0.92179 0.92622 0.89965 0.96403 0.93789 0.93354 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.72 37.16 0.36 -1.08 16 2 C -0.09 -1.04 5.38 -27.88 -0.15 -1.19 16 3 C -0.06 -0.73 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.31 9.68 -39.58 -0.38 -1.69 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.13 -1.29 10.05 -39.59 -0.40 -1.69 16 7 C -0.11 -1.17 9.68 -39.59 -0.38 -1.55 16 8 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 9 C -0.11 -1.18 3.49 -29.04 -0.10 -1.28 16 10 C 0.52 7.47 6.84 -10.99 -0.08 7.39 16 11 O -0.54 -9.65 15.45 5.56 0.09 -9.56 16 12 N -0.60 -8.48 2.95 -178.03 -0.53 -9.00 16 13 C 0.10 1.28 6.34 -3.88 -0.02 1.25 16 14 C -0.14 -2.31 5.22 -26.73 -0.14 -2.45 16 15 C 0.17 3.33 3.38 -67.67 -0.23 3.10 16 16 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.10 -1.81 2.49 -92.84 -0.23 -2.04 16 18 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 19 C -0.14 -2.58 6.36 -25.76 -0.16 -2.75 16 20 C 0.17 4.01 5.54 -3.07 -0.02 3.99 16 21 N -0.60 -14.55 3.07 -163.97 -0.50 -15.05 16 22 C -0.22 -5.93 9.86 -15.06 -0.15 -6.08 16 23 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 25 N -0.92 -26.56 10.22 55.49 0.57 -25.99 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.13 2.04 5.80 -7.47 -0.04 2.00 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 6.79 -51.93 -0.35 0.18 16 34 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.07 0.99 6.40 -51.93 -0.33 0.66 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.11 1.09 5.19 -51.93 -0.27 0.82 16 41 H 0.10 0.87 7.82 -51.93 -0.41 0.47 16 42 H 0.08 0.78 5.90 -51.93 -0.31 0.48 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.08 2.23 6.42 -51.93 -0.33 1.90 16 49 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 50 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.08 1.37 6.75 -51.93 -0.35 1.02 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -31.68 398.58 -11.66 -43.34 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.65 Total: 2.15 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.61 Total: -8.47 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.46 Total: -50.05 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.68 -11.66 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.065 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds