Wall clock time and date at job start Wed Apr 1 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46568 * 2 1 4 4 C 1.38262 * 120.00639 * 265.18969 * 3 2 1 5 5 C 1.38211 * 120.00152 * 180.21188 * 4 3 2 6 6 C 1.38256 * 119.99819 * 359.85586 * 5 4 3 7 7 C 1.38205 * 120.00598 * 359.95470 * 6 5 4 8 8 C 1.38222 * 119.99797 * 85.00304 * 3 2 1 9 9 C 1.50697 * 120.00009 * 359.97438 * 8 3 2 10 10 C 1.50701 * 109.47190 * 84.72643 * 9 8 3 11 11 O 1.21278 * 119.99826 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46829 * 120.30281 * 359.97438 * 12 10 9 14 14 C 1.52957 * 107.40542 * 125.00503 * 13 12 10 15 15 C 1.53048 * 109.99817 * 61.45312 * 14 13 12 16 16 H 1.09000 * 110.19640 * 70.38171 * 15 14 13 17 17 C 1.51818 * 112.36603 * 307.07727 * 15 14 13 18 18 H 1.09001 * 105.95853 * 152.42307 * 17 15 14 19 19 C 1.53388 * 105.74358 * 264.32572 * 17 15 14 20 20 C 1.54467 * 102.53393 * 330.24005 * 19 17 15 21 21 N 1.46863 * 106.66819 * 27.72587 * 20 19 17 22 22 C 1.36937 * 125.34190 * 164.62890 * 21 20 19 23 23 H 1.08005 * 119.99858 * 180.02562 * 22 21 20 24 24 C 1.38809 * 119.99768 * 0.02562 * 22 21 20 25 25 N 1.31620 * 120.00039 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46787 * 90.00524 * 26 24 22 28 28 H 1.48504 * 109.47418 * 210.00350 * 26 24 22 29 29 H 1.48498 * 109.47410 * 330.00905 * 26 24 22 30 30 C 1.43457 * 120.27084 * 179.14128 * 12 10 9 31 31 H 1.08997 * 109.47398 * 59.99636 * 1 2 3 32 32 H 1.09003 * 109.46670 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47203 * 299.99196 * 1 2 3 34 34 H 1.09001 * 109.47203 * 240.00804 * 2 1 3 35 35 H 1.08997 * 109.47398 * 120.00363 * 2 1 3 36 36 H 1.07999 * 119.99337 * 0.04149 * 4 3 2 37 37 H 1.08000 * 119.99626 * 179.83588 * 5 4 3 38 38 H 1.08002 * 119.99586 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00511 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.47231 * 324.72519 * 9 8 3 41 41 H 1.09001 * 109.47284 * 204.72566 * 9 8 3 42 42 H 1.09000 * 109.86776 * 5.52667 * 13 12 10 43 43 H 1.09001 * 109.92872 * 244.51405 * 13 12 10 44 44 H 1.08994 * 109.38288 * 301.28940 * 14 13 12 45 45 H 1.09003 * 109.37930 * 181.61320 * 14 13 12 46 46 H 1.09007 * 110.79683 * 211.98322 * 19 17 15 47 47 H 1.08993 * 110.96228 * 88.57509 * 19 17 15 48 48 H 1.08995 * 110.02224 * 147.02678 * 20 19 17 49 49 H 1.09005 * 110.02017 * 268.42581 * 20 19 17 50 50 H 0.97005 * 119.99920 * 179.97438 * 25 24 22 51 51 H 1.08998 * 107.05265 * 94.80879 * 30 12 10 52 52 H 1.08999 * 108.42514 * 338.24937 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3573 2.0393 -1.1931 5 6 2.8220 3.3409 -1.1926 6 6 2.9590 4.0256 0.0007 7 6 2.6304 3.4088 1.1930 8 6 2.1642 2.1072 1.1925 9 6 1.8054 1.4348 2.4926 10 6 2.9820 0.6319 2.9844 11 8 4.0106 0.6078 2.3422 12 7 2.8911 -0.0600 4.1374 13 6 1.6489 -0.0359 4.9198 14 6 1.2120 -1.4866 5.1296 15 6 2.2824 -2.2472 5.9156 16 1 2.3078 -1.9009 6.9488 17 6 3.6587 -2.1223 5.2871 18 1 4.3723 -2.2321 6.1037 19 6 3.8323 -3.3711 4.4135 20 6 2.9776 -4.4215 5.1567 21 7 1.9247 -3.6827 5.8655 22 6 0.7897 -4.2350 6.3964 23 1 0.0696 -3.6084 6.9017 24 6 0.5647 -5.6002 6.2852 25 7 1.4426 -6.3639 5.6699 26 14 -0.9832 -6.3538 7.0100 27 1 -2.0626 -6.3446 5.9900 28 1 -0.7056 -7.7526 7.4243 29 1 -1.4121 -5.5634 8.1917 30 6 4.0013 -0.8409 4.6016 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.2506 1.5043 -2.1251 37 1 3.0784 3.8231 -2.1244 38 1 3.3225 5.0426 0.0011 39 1 2.7370 3.9438 2.1252 40 1 0.9536 0.7727 2.3362 41 1 1.5464 2.1911 3.2335 42 1 0.8779 0.5081 4.3742 43 1 1.8263 0.4407 5.8840 44 1 1.0668 -1.9643 4.1607 45 1 0.2740 -1.5053 5.6845 46 1 4.8779 -3.6772 4.3792 47 1 3.4475 -3.2003 3.4082 48 1 2.5316 -5.1131 4.4420 49 1 3.5948 -4.9678 5.8700 50 1 1.2855 -7.3180 5.5925 51 1 4.5625 -0.2168 5.2970 52 1 4.6440 -1.0661 3.7506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:45 Heat of formation + Delta-G solvation = -5.980184 kcal Electronic energy + Delta-G solvation = -31004.517562 eV Core-core repulsion = 27161.293424 eV Total energy + Delta-G solvation = -3843.224138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.77042 -40.53220 -39.38164 -36.83350 -35.22971 -34.66577 -33.58399 -33.07693 -31.36878 -30.40644 -29.98217 -28.44908 -26.75100 -25.16969 -24.62964 -24.02659 -22.96025 -22.11281 -21.69410 -20.67480 -19.31602 -18.82483 -18.27560 -17.40850 -17.15899 -16.80483 -16.65368 -16.44957 -16.00585 -15.77767 -15.59184 -14.95114 -14.66754 -14.51572 -14.40564 -14.29204 -14.18462 -13.96526 -13.88494 -13.74819 -13.33343 -13.18177 -13.06976 -12.94669 -12.81024 -12.66849 -12.64252 -12.59836 -12.36654 -12.13321 -12.01725 -11.68339 -11.68058 -11.60291 -11.54096 -11.27831 -11.14884 -10.81748 -10.67937 -9.65327 -9.58518 -9.44420 -8.85370 -7.77383 -5.16468 0.46150 0.55173 1.47426 1.48821 1.57226 1.62927 2.11210 2.51077 2.90348 3.36105 3.50182 3.67361 3.69354 3.82049 3.85480 3.87666 4.01969 4.09341 4.10060 4.16419 4.28906 4.31930 4.36086 4.46950 4.49303 4.52509 4.59199 4.60685 4.66323 4.71610 4.75057 4.76751 4.79229 4.91097 4.93382 5.02732 5.04210 5.08008 5.14787 5.17275 5.25659 5.37118 5.38288 5.50245 5.56684 5.61855 5.65560 5.66558 5.70003 5.79020 5.81868 6.17819 6.27004 6.44828 7.13572 7.20560 7.82148 8.45797 9.29161 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.002844 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.762108 B = 9843.693158 C =10442.237159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.079 4.079 9 C -0.100 4.100 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.111 3.889 14 C -0.130 4.130 15 C 0.165 3.835 16 H 0.045 0.955 17 C -0.093 4.093 18 H 0.071 0.929 19 C -0.122 4.122 20 C 0.175 3.825 21 N -0.619 5.619 22 C -0.224 4.224 23 H 0.088 0.912 24 C -0.073 4.073 25 N -0.955 5.955 26 Si 0.975 3.025 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.266 1.266 30 C 0.140 3.860 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.049 0.951 48 H 0.043 0.957 49 H -0.014 1.014 50 H 0.243 0.757 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 22.197 -9.013 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.134 4.134 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.305 3.695 11 O -0.455 6.455 12 N -0.332 5.332 13 C -0.012 4.012 14 C -0.170 4.170 15 C 0.060 3.940 16 H 0.063 0.937 17 C -0.113 4.113 18 H 0.090 0.910 19 C -0.161 4.161 20 C 0.049 3.951 21 N -0.344 5.344 22 C -0.353 4.353 23 H 0.105 0.895 24 C -0.265 4.265 25 N -0.605 5.605 26 Si 0.804 3.196 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.191 1.191 30 C 0.015 3.985 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.004 0.996 50 H 0.053 0.947 51 H 0.088 0.912 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.140 21.975 -9.270 23.850 hybrid contribution -0.421 -1.552 0.444 1.668 sum -0.280 20.423 -8.827 22.250 Atomic orbital electron populations 1.21733 0.93281 1.02194 1.02699 1.20529 0.97212 0.92634 1.02076 1.19875 0.98808 0.95850 0.93366 1.21232 1.00368 0.95919 0.97588 1.21417 0.99120 0.94574 0.99123 1.21388 1.00414 1.00982 0.92318 1.21251 0.98490 0.94379 0.99269 1.19337 1.00613 0.94613 0.93378 1.20810 0.96454 1.00382 0.96241 1.20982 0.89629 0.79665 0.79254 1.90682 1.33098 1.64885 1.56882 1.47331 1.15883 1.46712 1.23240 1.21979 0.85354 0.96531 0.97305 1.22200 0.99556 0.95067 1.00213 1.20700 0.92303 0.84486 0.96536 0.93723 1.20664 0.97901 0.94179 0.98527 0.91008 1.22506 0.99954 0.95582 0.98023 1.21077 0.88312 0.92268 0.93412 1.44992 1.21115 1.02823 1.65423 1.19413 0.96673 0.91313 1.27899 0.89454 1.25626 1.01579 0.96945 1.02326 1.70187 1.36926 1.04125 1.49277 0.85111 0.79077 0.77166 0.78205 1.21423 1.22757 1.19104 1.19736 0.88818 0.90794 0.99111 0.91647 0.92256 0.91926 0.91158 0.93195 0.85167 0.84101 0.84008 0.84692 0.86842 0.85059 0.86889 0.88736 0.94077 0.91033 0.90321 0.93237 0.93885 0.99581 0.94749 0.91217 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.72 71.98 0.70 -1.95 16 2 C -0.09 -2.00 5.38 29.85 0.16 -1.83 16 3 C -0.08 -1.83 5.13 -19.86 -0.10 -1.93 16 4 C -0.13 -2.76 9.68 22.27 0.22 -2.54 16 5 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 6 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 7 C -0.12 -2.29 9.68 22.27 0.22 -2.08 16 8 C -0.08 -1.76 4.37 -19.86 -0.09 -1.84 16 9 C -0.10 -1.96 3.49 29.10 0.10 -1.86 16 10 C 0.51 13.94 6.84 87.66 0.60 14.54 16 11 O -0.58 -20.24 15.45 -3.02 -0.05 -20.29 16 12 N -0.60 -15.53 2.95 -835.55 -2.47 -18.00 16 13 C 0.11 2.36 6.34 86.30 0.55 2.91 16 14 C -0.13 -4.07 5.22 30.60 0.16 -3.91 16 15 C 0.17 6.19 3.38 44.33 0.15 6.34 16 16 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 17 C -0.09 -3.11 2.49 -12.23 -0.03 -3.14 16 18 H 0.07 2.31 8.06 -2.39 -0.02 2.29 16 19 C -0.12 -4.74 6.36 31.22 0.20 -4.54 16 20 C 0.17 8.77 5.54 86.81 0.48 9.25 16 21 N -0.62 -30.57 3.07 -672.68 -2.06 -32.63 16 22 C -0.22 -12.01 9.86 84.03 0.83 -11.18 16 23 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 24 C -0.07 -4.08 5.48 84.86 0.47 -3.61 16 25 N -0.96 -57.59 10.22 21.65 0.22 -57.37 16 26 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 C 0.14 4.01 5.80 85.76 0.50 4.50 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.07 6.79 -2.39 -0.02 1.06 16 34 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 35 H 0.05 1.36 6.40 -2.39 -0.02 1.35 16 36 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.11 2.05 5.19 -2.38 -0.01 2.04 16 41 H 0.13 1.71 7.82 -2.39 -0.02 1.70 16 42 H 0.11 1.72 5.90 -2.39 -0.01 1.70 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 46 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.04 2.49 6.42 -2.39 -0.02 2.47 16 49 H -0.01 -0.77 8.12 -2.38 -0.02 -0.79 16 50 H 0.24 14.38 8.31 -92.70 -0.77 13.61 16 51 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.07 2.22 6.75 -2.39 -0.02 2.20 16 Total: -1.00 -72.13 398.58 4.11 -68.02 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.89 Total: 20.15 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.55 Total: -7.06 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.31 Total: -108.00 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.13 4.11 -68.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.040 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds