Wall clock time and date at job start Wed Apr 1 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46952 * 2 1 4 4 C 1.38262 * 119.99648 * 270.02558 * 3 2 1 5 5 C 1.38213 * 119.99403 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00378 * 359.73961 * 5 4 3 7 7 C 1.38217 * 119.99765 * 0.51170 * 6 5 4 8 8 C 1.50698 * 120.00256 * 179.76534 * 7 6 5 9 9 C 1.50704 * 109.47161 * 269.72893 * 8 7 6 10 10 O 1.21273 * 119.99937 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00012 * 179.97438 * 9 8 7 12 12 C 1.47136 * 121.01705 * 0.02562 * 11 9 8 13 13 C 1.52679 * 107.54706 * 119.89951 * 12 11 9 14 14 C 1.50744 * 113.11552 * 51.45931 * 13 12 11 15 15 H 1.08994 * 106.00832 * 201.80014 * 14 13 12 16 16 C 1.51301 * 117.50726 * 318.62559 * 14 13 12 17 17 H 1.08999 * 109.95949 * 267.76833 * 16 14 13 18 18 C 1.55285 * 103.76402 * 150.16893 * 16 14 13 19 19 C 1.54226 * 103.31222 * 332.01709 * 18 16 14 20 20 N 1.46013 * 113.61613 * 88.03000 * 14 13 12 21 21 C 1.36935 * 125.76158 * 45.32169 * 20 14 13 22 22 H 1.07995 * 119.99726 * 359.97438 * 21 20 14 23 23 C 1.38808 * 120.00049 * 179.97438 * 21 20 14 24 24 N 1.31627 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00145 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47054 * 60.00073 * 25 23 21 27 27 H 1.48507 * 109.47178 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47240 * 299.99951 * 25 23 21 29 29 C 1.46098 * 121.01865 * 179.97438 * 11 9 8 30 30 C 1.38206 * 119.99864 * 89.99842 * 3 2 1 31 31 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47247 * 299.99698 * 1 2 3 33 33 H 1.08996 * 109.47705 * 60.00072 * 1 2 3 34 34 H 1.09003 * 109.47237 * 240.00031 * 2 1 3 35 35 H 1.08996 * 109.47198 * 120.00073 * 2 1 3 36 36 H 1.07995 * 120.00291 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99474 * 180.02562 * 5 4 3 38 38 H 1.07997 * 120.00250 * 180.28163 * 6 5 4 39 39 H 1.08998 * 109.47813 * 149.72504 * 8 7 6 40 40 H 1.09005 * 109.47118 * 29.72927 * 8 7 6 41 41 H 1.08998 * 109.83909 * 239.40705 * 12 11 9 42 42 H 1.08990 * 109.84500 * 0.32292 * 12 11 9 43 43 H 1.09003 * 108.85464 * 172.62783 * 13 12 11 44 44 H 1.09004 * 108.86055 * 291.01567 * 13 12 11 45 45 H 1.08999 * 110.65394 * 213.56494 * 18 16 14 46 46 H 1.08992 * 110.79113 * 90.53934 * 18 16 14 47 47 H 1.09006 * 110.05125 * 147.30632 * 19 18 16 48 48 H 1.08997 * 110.05398 * 268.78881 * 19 18 16 49 49 H 0.97007 * 119.99560 * 180.02562 * 24 23 21 50 50 H 1.09007 * 109.01463 * 111.78048 * 29 11 9 51 51 H 1.08995 * 109.02032 * 352.97449 * 29 11 9 52 52 H 1.08004 * 120.00297 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0728 -1.1974 5 6 2.7223 3.3760 -1.1974 6 6 2.9476 4.0296 -0.0001 7 6 2.7227 3.3761 1.1969 8 6 2.9733 4.0867 2.5020 9 6 4.3967 3.8506 2.9373 10 8 5.1347 3.1718 2.2552 11 7 4.8494 4.3938 4.0847 12 6 3.9732 5.2205 4.9296 13 6 3.8799 4.5448 6.2955 14 6 5.2272 4.2189 6.8879 15 1 5.0518 3.4272 7.6161 16 6 6.2841 3.6652 5.9576 17 1 6.2503 2.5757 5.9625 18 6 7.6188 4.1575 6.5801 19 6 7.2149 5.4586 7.3029 20 7 5.7989 5.3077 7.6750 21 6 5.1307 6.0608 8.6032 22 1 4.0871 5.8689 8.8042 23 6 5.7947 7.0707 9.2858 24 7 7.0668 7.3041 9.0412 25 14 4.8830 8.0984 10.5515 26 1 4.3689 7.2151 11.6290 27 1 5.8095 9.1019 11.1347 28 1 3.7461 8.7948 9.8977 29 6 6.2248 4.1790 4.5281 30 6 2.2626 2.0724 1.1969 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0822 1.5636 -2.1327 37 1 2.9015 3.8854 -2.1327 38 1 3.3028 5.0495 -0.0001 39 1 2.2926 3.7024 3.2616 40 1 2.8058 5.1559 2.3716 41 1 4.3985 6.2182 5.0387 42 1 2.9824 5.2878 4.4806 43 1 3.3443 5.2039 6.9788 44 1 3.3179 3.6165 6.1918 45 1 8.3536 4.3626 5.8015 46 1 8.0069 3.4276 7.2905 47 1 7.8239 5.5940 8.1969 48 1 7.3369 6.3109 6.6345 49 1 7.5309 8.0097 9.5185 50 1 6.7689 5.1216 4.4671 51 1 6.7009 3.4525 3.8697 52 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036753543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:51 Heat of formation + Delta-G solvation = 6.138302 kcal Electronic energy + Delta-G solvation = -30196.031343 eV Core-core repulsion = 26353.332702 eV Total energy + Delta-G solvation = -3842.698641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.38016 -39.43224 -38.12284 -35.20468 -34.60290 -33.03654 -32.39605 -31.72926 -29.80095 -29.48696 -28.30134 -27.32689 -25.18699 -24.12567 -23.81807 -22.65071 -22.15476 -20.80482 -20.19761 -19.41124 -18.06204 -17.04045 -16.66614 -16.41331 -15.93287 -15.83156 -15.18880 -15.05611 -14.84975 -14.47316 -14.01414 -13.90549 -13.88323 -13.74845 -13.26126 -13.14489 -13.02261 -12.89635 -12.61766 -12.23628 -12.16152 -11.96904 -11.88618 -11.70789 -11.49399 -11.34826 -11.18380 -11.12625 -10.95971 -10.90916 -10.79332 -10.55680 -10.25477 -10.12818 -9.94953 -9.67088 -9.64229 -9.55999 -8.84710 -8.67246 -8.63618 -8.28872 -6.82271 -5.71809 -3.08992 1.25634 1.33269 2.78617 3.19857 3.36697 3.41428 3.42841 3.71898 4.44790 4.50236 4.55842 4.71731 4.74948 4.93752 5.00914 5.10322 5.11048 5.14996 5.25291 5.29166 5.29498 5.36031 5.38477 5.43061 5.48789 5.50107 5.54739 5.66159 5.66473 5.70629 5.83274 5.89218 5.91622 5.98836 6.02184 6.10833 6.16957 6.27119 6.29976 6.37754 6.40680 6.48451 6.53892 6.56252 6.69983 6.75945 6.88899 6.93452 6.99181 7.50856 7.61337 7.66512 7.82861 8.30046 8.35716 9.18934 9.81112 10.47089 11.35728 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002333 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.951042 B =12000.277109 C =12331.000313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.543 6.543 11 N -0.604 5.604 12 C 0.113 3.887 13 C -0.136 4.136 14 C 0.174 3.826 15 H 0.008 0.992 16 C -0.100 4.100 17 H 0.068 0.932 18 C -0.140 4.140 19 C 0.163 3.837 20 N -0.592 5.592 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.125 3.875 30 C -0.102 4.102 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.015 0.985 49 H 0.252 0.748 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 -9.538 -17.337 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.057 4.057 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.421 6.421 11 N -0.336 5.336 12 C -0.009 4.009 13 C -0.176 4.176 14 C 0.066 3.934 15 H 0.025 0.975 16 C -0.120 4.120 17 H 0.087 0.913 18 C -0.179 4.179 19 C 0.038 3.962 20 N -0.317 5.317 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.003 3.997 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.106 0.894 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.017 -9.720 -17.523 22.403 hybrid contribution -0.412 0.729 0.823 1.174 sum -10.429 -8.991 -16.701 21.645 Atomic orbital electron populations 1.21745 0.94782 1.01600 1.02189 1.20537 0.96078 0.92780 1.02854 1.19815 0.99278 0.96076 0.93095 1.20962 1.00663 0.95034 0.97312 1.21048 0.99685 0.94961 0.97789 1.20961 0.99846 1.00017 0.91999 1.19299 0.98413 0.94310 0.93700 1.20714 0.95163 1.02395 0.95992 1.20388 0.89240 0.79377 0.80584 1.90685 1.58267 1.39368 1.53759 1.48008 1.13389 1.50387 1.21865 1.21700 0.93505 0.94926 0.90801 1.21675 0.99660 1.00201 0.96091 1.19360 0.90782 0.91654 0.91635 0.97475 1.21574 0.97336 0.99276 0.93805 0.91317 1.23029 0.95082 1.00520 0.99274 1.21466 0.86114 0.90420 0.98197 1.44323 1.06828 1.38267 1.42308 1.18904 0.94057 1.10014 1.12237 0.90483 1.24777 0.96230 0.99130 1.00268 1.69901 1.08458 1.33885 1.44523 0.86209 0.78438 0.79887 0.81271 1.21192 1.21635 1.21223 1.21220 0.81946 1.01564 0.95017 1.20833 0.99661 0.93943 0.97587 0.92491 0.92501 0.92643 0.91143 0.91022 0.86443 0.86214 0.86334 0.87990 0.88006 0.90334 0.90459 0.89849 0.93121 0.92036 0.92175 0.89426 0.96720 0.93697 0.91648 0.89858 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.87 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 8 C -0.10 -1.16 4.19 -29.03 -0.12 -1.28 16 9 C 0.52 7.78 7.70 -10.98 -0.08 7.69 16 10 O -0.54 -10.02 15.45 5.56 0.09 -9.93 16 11 N -0.60 -9.27 2.93 -174.29 -0.51 -9.78 16 12 C 0.11 1.64 6.45 -3.86 -0.02 1.62 16 13 C -0.14 -2.26 5.69 -28.03 -0.16 -2.42 16 14 C 0.17 3.43 2.74 -70.18 -0.19 3.23 16 15 H 0.01 0.16 8.06 -51.93 -0.42 -0.26 16 16 C -0.10 -1.76 3.26 -90.76 -0.30 -2.05 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.14 -2.60 6.30 -24.88 -0.16 -2.75 16 19 C 0.16 3.82 5.64 -3.03 -0.02 3.80 16 20 N -0.59 -14.23 3.29 -167.01 -0.55 -14.78 16 21 C -0.22 -5.86 9.55 -15.06 -0.14 -6.01 16 22 H 0.08 1.93 7.04 -52.49 -0.37 1.56 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.10 10.24 55.49 0.57 -25.53 16 25 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 29 C 0.13 2.08 5.71 -4.76 -0.03 2.05 16 30 C -0.10 -1.19 9.36 -39.59 -0.37 -1.56 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.10 0.98 7.78 -51.93 -0.40 0.57 16 40 H 0.10 0.96 7.79 -51.93 -0.40 0.56 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 0.86 5.99 -51.93 -0.31 0.55 16 43 H 0.08 1.49 6.66 -51.93 -0.35 1.14 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 2.33 6.33 -51.93 -0.33 2.00 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.07 1.14 7.62 -51.92 -0.40 0.74 16 51 H 0.08 1.40 6.98 -51.93 -0.36 1.04 16 52 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -31.14 403.53 -11.79 -42.93 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.79 Total: 1.63 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.65 Total: -6.94 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.49 Total: -50.09 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.14 -11.79 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.067 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds