Wall clock time and date at job start Wed Apr 1 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46952 * 2 1 4 4 C 1.38262 * 119.99648 * 270.02558 * 3 2 1 5 5 C 1.38213 * 119.99403 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00378 * 359.73961 * 5 4 3 7 7 C 1.38217 * 119.99765 * 0.51170 * 6 5 4 8 8 C 1.50698 * 120.00256 * 179.76534 * 7 6 5 9 9 C 1.50704 * 109.47161 * 269.72893 * 8 7 6 10 10 O 1.21273 * 119.99937 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00012 * 179.97438 * 9 8 7 12 12 C 1.47136 * 121.01705 * 0.02562 * 11 9 8 13 13 C 1.52679 * 107.54706 * 119.89951 * 12 11 9 14 14 C 1.50744 * 113.11552 * 51.45931 * 13 12 11 15 15 H 1.08994 * 106.00832 * 201.80014 * 14 13 12 16 16 C 1.51301 * 117.50726 * 318.62559 * 14 13 12 17 17 H 1.08999 * 109.95949 * 267.76833 * 16 14 13 18 18 C 1.55285 * 103.76402 * 150.16893 * 16 14 13 19 19 C 1.54226 * 103.31222 * 332.01709 * 18 16 14 20 20 N 1.46013 * 113.61613 * 88.03000 * 14 13 12 21 21 C 1.36935 * 125.76158 * 45.32169 * 20 14 13 22 22 H 1.07995 * 119.99726 * 359.97438 * 21 20 14 23 23 C 1.38808 * 120.00049 * 179.97438 * 21 20 14 24 24 N 1.31627 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00145 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47054 * 60.00073 * 25 23 21 27 27 H 1.48507 * 109.47178 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47240 * 299.99951 * 25 23 21 29 29 C 1.46098 * 121.01865 * 179.97438 * 11 9 8 30 30 C 1.38206 * 119.99864 * 89.99842 * 3 2 1 31 31 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47247 * 299.99698 * 1 2 3 33 33 H 1.08996 * 109.47705 * 60.00072 * 1 2 3 34 34 H 1.09003 * 109.47237 * 240.00031 * 2 1 3 35 35 H 1.08996 * 109.47198 * 120.00073 * 2 1 3 36 36 H 1.07995 * 120.00291 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99474 * 180.02562 * 5 4 3 38 38 H 1.07997 * 120.00250 * 180.28163 * 6 5 4 39 39 H 1.08998 * 109.47813 * 149.72504 * 8 7 6 40 40 H 1.09005 * 109.47118 * 29.72927 * 8 7 6 41 41 H 1.08998 * 109.83909 * 239.40705 * 12 11 9 42 42 H 1.08990 * 109.84500 * 0.32292 * 12 11 9 43 43 H 1.09003 * 108.85464 * 172.62783 * 13 12 11 44 44 H 1.09004 * 108.86055 * 291.01567 * 13 12 11 45 45 H 1.08999 * 110.65394 * 213.56494 * 18 16 14 46 46 H 1.08992 * 110.79113 * 90.53934 * 18 16 14 47 47 H 1.09006 * 110.05125 * 147.30632 * 19 18 16 48 48 H 1.08997 * 110.05398 * 268.78881 * 19 18 16 49 49 H 0.97007 * 119.99560 * 180.02562 * 24 23 21 50 50 H 1.09007 * 109.01463 * 111.78048 * 29 11 9 51 51 H 1.08995 * 109.02032 * 352.97449 * 29 11 9 52 52 H 1.08004 * 120.00297 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0728 -1.1974 5 6 2.7223 3.3760 -1.1974 6 6 2.9476 4.0296 -0.0001 7 6 2.7227 3.3761 1.1969 8 6 2.9733 4.0867 2.5020 9 6 4.3967 3.8506 2.9373 10 8 5.1347 3.1718 2.2552 11 7 4.8494 4.3938 4.0847 12 6 3.9732 5.2205 4.9296 13 6 3.8799 4.5448 6.2955 14 6 5.2272 4.2189 6.8879 15 1 5.0518 3.4272 7.6161 16 6 6.2841 3.6652 5.9576 17 1 6.2503 2.5757 5.9625 18 6 7.6188 4.1575 6.5801 19 6 7.2149 5.4586 7.3029 20 7 5.7989 5.3077 7.6750 21 6 5.1307 6.0608 8.6032 22 1 4.0871 5.8689 8.8042 23 6 5.7947 7.0707 9.2858 24 7 7.0668 7.3041 9.0412 25 14 4.8830 8.0984 10.5515 26 1 4.3689 7.2151 11.6290 27 1 5.8095 9.1019 11.1347 28 1 3.7461 8.7948 9.8977 29 6 6.2248 4.1790 4.5281 30 6 2.2626 2.0724 1.1969 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0822 1.5636 -2.1327 37 1 2.9015 3.8854 -2.1327 38 1 3.3028 5.0495 -0.0001 39 1 2.2926 3.7024 3.2616 40 1 2.8058 5.1559 2.3716 41 1 4.3985 6.2182 5.0387 42 1 2.9824 5.2878 4.4806 43 1 3.3443 5.2039 6.9788 44 1 3.3179 3.6165 6.1918 45 1 8.3536 4.3626 5.8015 46 1 8.0069 3.4276 7.2905 47 1 7.8239 5.5940 8.1969 48 1 7.3369 6.3109 6.6345 49 1 7.5309 8.0097 9.5185 50 1 6.7689 5.1216 4.4671 51 1 6.7009 3.4525 3.8697 52 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036753543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:49 Heat of formation + Delta-G solvation = -8.710113 kcal Electronic energy + Delta-G solvation = -30196.675219 eV Core-core repulsion = 26353.332702 eV Total energy + Delta-G solvation = -3843.342516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.58102 -40.43359 -39.46002 -36.65905 -35.34466 -34.68038 -33.40985 -33.19755 -31.27702 -30.38927 -29.70305 -28.48188 -26.83252 -25.37977 -24.76582 -24.05199 -22.99067 -22.03238 -21.63861 -20.59899 -19.50398 -18.48034 -18.01649 -17.49208 -17.07049 -16.86047 -16.76349 -16.20443 -15.97265 -15.80969 -15.59056 -15.11041 -14.73097 -14.58751 -14.48516 -14.29190 -14.09058 -14.04023 -13.91906 -13.70872 -13.27680 -13.05679 -12.95573 -12.89068 -12.80595 -12.67137 -12.57269 -12.53744 -12.19533 -12.10175 -11.98444 -11.70473 -11.66547 -11.60837 -11.56437 -11.45367 -11.24362 -10.84597 -10.64644 -9.65257 -9.61116 -9.46609 -8.78407 -7.76290 -5.14744 0.45053 0.54202 1.49053 1.51289 1.57360 1.63316 2.03818 2.52449 2.88559 3.36539 3.59056 3.67528 3.74166 3.79321 3.85767 3.93438 3.95415 4.02137 4.20308 4.25569 4.26876 4.30443 4.38841 4.43090 4.52861 4.57076 4.58812 4.60436 4.60827 4.72162 4.72610 4.79586 4.81095 4.90626 4.96839 5.03768 5.10613 5.11033 5.15006 5.22430 5.25440 5.37257 5.40597 5.43938 5.52297 5.57444 5.60922 5.67406 5.69859 5.76122 5.84364 6.16969 6.31064 6.47902 7.15498 7.17795 7.85266 8.50175 9.30190 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002333 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.951042 B =12000.277109 C =12331.000313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.074 4.074 8 C -0.097 4.097 9 C 0.517 3.483 10 O -0.579 6.579 11 N -0.605 5.605 12 C 0.120 3.880 13 C -0.132 4.132 14 C 0.168 3.832 15 H -0.007 1.007 16 C -0.091 4.091 17 H 0.085 0.915 18 C -0.128 4.128 19 C 0.170 3.830 20 N -0.609 5.609 21 C -0.226 4.226 22 H 0.087 0.913 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.974 3.026 26 H -0.279 1.279 27 H -0.300 1.300 28 H -0.275 1.275 29 C 0.131 3.869 30 C -0.119 4.119 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.050 0.950 48 H -0.014 1.014 49 H 0.244 0.756 50 H 0.053 0.947 51 H 0.084 0.916 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -10.615 -18.809 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.074 4.074 8 C -0.136 4.136 9 C 0.308 3.692 10 O -0.459 6.459 11 N -0.337 5.337 12 C -0.002 4.002 13 C -0.172 4.172 14 C 0.062 3.938 15 H 0.011 0.989 16 C -0.111 4.111 17 H 0.104 0.896 18 C -0.167 4.167 19 C 0.044 3.956 20 N -0.334 5.334 21 C -0.355 4.355 22 H 0.105 0.895 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.803 3.197 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.201 1.201 29 C 0.008 3.992 30 C -0.137 4.137 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.004 0.996 49 H 0.053 0.947 50 H 0.071 0.929 51 H 0.102 0.898 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.385 -10.819 -19.009 25.135 hybrid contribution 0.318 0.988 1.232 1.611 sum -12.067 -9.831 -17.777 23.628 Atomic orbital electron populations 1.21715 0.93824 1.02386 1.02015 1.20579 0.96854 0.91548 1.03231 1.20132 0.98853 0.97092 0.93019 1.21279 1.00148 0.95126 0.98110 1.21364 0.99175 0.95287 0.98383 1.21201 1.00315 1.00651 0.92411 1.19462 0.99074 0.94727 0.94145 1.20761 0.92577 1.03907 0.96324 1.21032 0.90436 0.78157 0.79621 1.90670 1.59625 1.40931 1.54658 1.48042 1.12837 1.50539 1.22254 1.21705 0.95282 0.93277 0.89907 1.21577 0.97431 1.01400 0.96780 1.19612 0.92804 0.89682 0.91717 0.98897 1.21516 0.95656 1.00053 0.93844 0.89633 1.22895 0.96312 0.97958 0.99558 1.21202 0.85912 0.92033 0.96425 1.44564 1.07310 1.38725 1.42834 1.19300 0.94532 1.09603 1.12025 0.89544 1.25578 0.97039 1.00833 1.02615 1.70147 1.09890 1.34370 1.45727 0.85206 0.77252 0.78149 0.79056 1.20560 1.22674 1.20077 1.21033 0.83102 1.00834 0.94258 1.21034 1.00266 0.94153 0.98284 0.91235 0.92995 0.92485 0.90216 0.91207 0.84451 0.84300 0.85633 0.85734 0.85790 0.92459 0.86148 0.91037 0.90563 0.89997 0.91547 0.93146 0.99572 0.94657 0.92913 0.89812 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.08 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.76 5.13 -19.86 -0.10 -1.86 16 4 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 5 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 7 C -0.07 -1.63 4.37 -19.86 -0.09 -1.72 16 8 C -0.10 -1.89 4.19 29.10 0.12 -1.77 16 9 C 0.52 14.48 7.70 87.66 0.68 15.16 16 10 O -0.58 -20.60 15.45 -3.01 -0.05 -20.65 16 11 N -0.60 -17.39 2.93 -823.72 -2.41 -19.80 16 12 C 0.12 3.21 6.45 86.15 0.56 3.77 16 13 C -0.13 -4.12 5.69 29.76 0.17 -3.95 16 14 C 0.17 6.52 2.74 43.80 0.12 6.64 16 15 H -0.01 -0.28 8.06 -2.39 -0.02 -0.30 16 16 C -0.09 -3.09 3.26 -10.89 -0.04 -3.13 16 17 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 18 C -0.13 -4.75 6.30 31.79 0.20 -4.55 16 19 C 0.17 8.23 5.64 86.66 0.49 8.72 16 20 N -0.61 -29.70 3.29 -682.31 -2.25 -31.94 16 21 C -0.23 -11.93 9.55 84.03 0.80 -11.13 16 22 H 0.09 4.29 7.04 -2.91 -0.02 4.27 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 24 N -0.95 -56.09 10.24 21.65 0.22 -55.87 16 25 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C 0.13 4.21 5.71 86.13 0.49 4.71 16 30 C -0.12 -2.58 9.36 22.27 0.21 -2.37 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 35 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.12 1.89 7.78 -2.39 -0.02 1.87 16 40 H 0.12 1.89 7.79 -2.38 -0.02 1.87 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.12 2.19 5.99 -2.39 -0.01 2.17 16 43 H 0.07 2.43 6.66 -2.39 -0.02 2.41 16 44 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.08 2.68 7.66 -2.39 -0.02 2.67 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 2.82 6.33 -2.38 -0.02 2.80 16 48 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 49 H 0.24 14.15 8.31 -92.70 -0.77 13.38 16 50 H 0.05 1.83 7.62 -2.38 -0.02 1.81 16 51 H 0.08 2.72 6.98 -2.39 -0.02 2.70 16 52 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.54 403.53 4.05 -65.49 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.89 Total: 19.88 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.62 Total: -3.60 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.44 Total: -107.61 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.54 4.05 -65.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.775 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds