Wall clock time and date at job start Wed Apr 1 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47057 * 2 1 4 4 C 1.38254 * 120.00254 * 89.99954 * 3 2 1 5 5 C 1.38212 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.99650 * 0.26336 * 5 4 3 7 7 C 1.38209 * 120.00092 * 359.45889 * 6 5 4 8 8 C 1.50699 * 120.00241 * 180.28376 * 7 6 5 9 9 C 1.50698 * 109.46819 * 270.27804 * 8 7 6 10 10 O 1.21288 * 120.00225 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00248 * 179.97438 * 9 8 7 12 12 C 1.46597 * 119.68067 * 359.72939 * 11 9 8 13 13 C 1.54376 * 110.35093 * 132.09763 * 12 11 9 14 14 C 1.51518 * 107.26358 * 51.31908 * 13 12 11 15 15 H 1.09000 * 108.81907 * 53.29872 * 14 13 12 16 16 C 1.55368 * 107.78250 * 294.99728 * 14 13 12 17 17 H 1.09001 * 111.50271 * 309.61985 * 16 14 13 18 18 C 1.53739 * 101.00782 * 191.29262 * 16 14 13 19 19 C 1.55289 * 101.84076 * 38.63230 * 18 16 14 20 20 N 1.46153 * 118.26247 * 177.80994 * 14 13 12 21 21 C 1.36943 * 125.88296 * 329.05534 * 20 14 13 22 22 H 1.07990 * 119.99941 * 359.05272 * 21 20 14 23 23 C 1.38811 * 119.99519 * 179.05274 * 21 20 14 24 24 N 1.31612 * 120.00694 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99589 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46839 * 89.99805 * 25 23 21 27 27 H 1.48494 * 109.47315 * 210.00346 * 25 23 21 28 28 H 1.48507 * 109.46945 * 330.00373 * 25 23 21 29 29 C 1.47718 * 119.68597 * 180.02562 * 11 9 8 30 30 C 1.38216 * 120.00020 * 270.02241 * 3 2 1 31 31 H 1.08997 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47130 * 300.00158 * 1 2 3 33 33 H 1.09006 * 109.47018 * 59.99966 * 1 2 3 34 34 H 1.08996 * 109.47130 * 239.99842 * 2 1 3 35 35 H 1.08999 * 109.47305 * 119.99784 * 2 1 3 36 36 H 1.07999 * 119.99740 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99812 * 179.97438 * 5 4 3 38 38 H 1.08004 * 119.99616 * 179.72197 * 6 5 4 39 39 H 1.09007 * 109.47085 * 30.27502 * 8 7 6 40 40 H 1.09002 * 109.47462 * 150.27727 * 8 7 6 41 41 H 1.09001 * 109.25773 * 252.46712 * 12 11 9 42 42 H 1.09001 * 109.25859 * 11.89421 * 12 11 9 43 43 H 1.08994 * 110.04369 * 291.81401 * 13 12 11 44 44 H 1.08998 * 109.86012 * 170.71602 * 13 12 11 45 45 H 1.08995 * 110.95235 * 156.76759 * 18 16 14 46 46 H 1.09000 * 110.95177 * 280.45727 * 18 16 14 47 47 H 1.08994 * 109.92427 * 96.86823 * 19 18 16 48 48 H 1.08999 * 109.91601 * 217.97396 * 19 18 16 49 49 H 0.97000 * 120.00198 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.07044 * 351.26011 * 29 11 9 51 51 H 1.08999 * 110.07245 * 112.74087 * 29 11 9 52 52 H 1.08001 * 119.99686 * 359.97250 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7230 3.3759 1.1973 6 6 2.9477 4.0296 -0.0001 7 6 2.7228 3.3761 -1.1970 8 6 2.9739 4.0865 -2.5021 9 6 1.7179 4.7968 -2.9370 10 8 0.7173 4.7321 -2.2546 11 7 1.7065 5.5040 -4.0844 12 6 2.9215 5.5825 -4.9008 13 6 2.5937 5.2896 -6.3807 14 6 1.4385 6.1887 -6.7718 15 1 1.6966 7.2191 -6.5275 16 6 0.2002 5.7604 -5.9369 17 1 0.0310 4.6852 -5.9958 18 6 -0.9172 6.5415 -6.6474 19 6 -0.4935 6.4205 -8.1364 20 7 0.9615 6.1414 -8.1525 21 6 1.7248 5.8698 -9.2566 22 1 2.7825 5.6809 -9.1486 23 6 1.1387 5.8372 -10.5145 24 7 -0.1503 6.0679 -10.6462 25 14 2.1800 5.4674 -12.0207 26 1 2.1965 4.0025 -12.2635 27 1 1.6045 6.1587 -13.2022 28 1 3.5670 5.9471 -11.7935 29 6 0.4717 6.1979 -4.5037 30 6 2.2623 2.0725 -1.1970 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0832 1.5634 2.1326 37 1 2.9026 3.8851 2.1327 38 1 3.3030 5.0495 -0.0001 39 1 3.7757 4.8133 -2.3718 40 1 3.2620 3.3599 -3.2618 41 1 3.3486 6.5816 -4.8147 42 1 3.6448 4.8509 -4.5404 43 1 2.3073 4.2448 -6.5002 44 1 3.4615 5.5093 -7.0027 45 1 -1.8873 6.0740 -6.4790 46 1 -0.9281 7.5836 -6.3280 47 1 -1.0340 5.6016 -8.6111 48 1 -0.7013 7.3544 -8.6587 49 1 -0.5597 6.0455 -11.5253 50 1 -0.3581 5.9065 -3.8600 51 1 0.6165 7.2774 -4.4613 52 1 2.0823 1.5633 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036753544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:55 Heat of formation + Delta-G solvation = 6.775771 kcal Electronic energy + Delta-G solvation = -30043.816315 eV Core-core repulsion = 26201.145317 eV Total energy + Delta-G solvation = -3842.670998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.45017 -39.44960 -38.10405 -35.34734 -34.60704 -32.92028 -32.36712 -31.54106 -29.92501 -29.54453 -28.44077 -27.25268 -24.87092 -24.10780 -23.48537 -22.43532 -22.12780 -20.78794 -20.06989 -19.67677 -18.73779 -17.18165 -16.67818 -16.27459 -16.02416 -15.73413 -15.13640 -15.05797 -14.92276 -14.37453 -14.02341 -13.91619 -13.81890 -13.69014 -13.32022 -13.18846 -13.15291 -12.81442 -12.63057 -12.43056 -12.19788 -12.08011 -11.87798 -11.66577 -11.50399 -11.43304 -11.38504 -11.00695 -10.91937 -10.84067 -10.82178 -10.72813 -10.16979 -10.10411 -9.89578 -9.69050 -9.65182 -9.48041 -8.87395 -8.70177 -8.63923 -8.49256 -6.85201 -5.72937 -3.06150 1.22558 1.30610 2.70882 3.07304 3.37940 3.42748 3.45035 3.67273 4.46485 4.47383 4.54745 4.65414 4.69905 4.94018 4.98055 4.98181 5.07507 5.09630 5.16266 5.24106 5.29353 5.31039 5.34156 5.41751 5.47621 5.53130 5.55981 5.60376 5.68859 5.70464 5.78949 5.87094 5.93455 5.96887 6.02506 6.04136 6.13831 6.16959 6.22122 6.33727 6.35772 6.45654 6.48856 6.51480 6.60180 6.62006 6.83073 6.90543 7.04845 7.50068 7.53621 7.60321 7.79612 8.22701 8.26800 9.18025 9.81192 10.48859 11.39512 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.002312 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.066284 B =12109.238131 C =12282.949993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.104 4.104 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.609 5.609 12 C 0.110 3.890 13 C -0.129 4.129 14 C 0.166 3.834 15 H 0.021 0.979 16 C -0.122 4.122 17 H 0.077 0.923 18 C -0.136 4.136 19 C 0.179 3.821 20 N -0.596 5.596 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.126 3.874 30 C -0.102 4.102 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -6.465 21.799 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.342 5.342 12 C -0.013 4.013 13 C -0.169 4.169 14 C 0.058 3.942 15 H 0.038 0.962 16 C -0.143 4.143 17 H 0.096 0.904 18 C -0.175 4.175 19 C 0.055 3.945 20 N -0.320 5.320 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.005 3.995 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.085 0.915 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.825 -6.482 21.880 23.552 hybrid contribution 0.551 -0.103 -1.047 1.187 sum 6.377 -6.584 20.833 22.760 Atomic orbital electron populations 1.21751 0.94628 1.01578 1.02529 1.20535 0.96331 0.92619 1.02641 1.19837 0.99012 0.96287 0.93083 1.20967 1.00488 0.95116 0.97334 1.21046 0.99805 0.94913 0.97775 1.20938 1.00562 0.99321 0.91996 1.19290 0.98982 0.93957 0.93666 1.20750 0.97164 1.00381 0.96090 1.20484 0.89827 0.78868 0.80722 1.90699 1.35243 1.61941 1.53725 1.48339 1.13216 1.50606 1.22034 1.21902 0.85758 1.01820 0.91864 1.21950 1.00507 1.01215 0.93193 1.20751 0.91589 0.95452 0.86446 0.96217 1.22620 0.98145 1.00464 0.93041 0.90415 1.22700 0.97007 0.98748 0.99026 1.21502 0.83778 1.00297 0.88927 1.44405 1.05009 1.82802 0.99816 1.19002 0.91265 1.40958 0.84210 0.90412 1.24796 0.96048 1.02129 0.97507 1.69934 1.09233 1.55556 1.22180 0.86163 0.79173 0.77830 0.82854 1.21676 1.21709 1.20723 1.21615 0.86297 0.95873 0.95757 1.20853 0.99108 0.94378 0.97649 0.92480 0.92603 0.92287 0.91074 0.91207 0.86420 0.86221 0.86391 0.88036 0.87886 0.91556 0.90202 0.91399 0.90510 0.92057 0.92336 0.92845 0.94298 0.93751 0.89336 0.91453 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.90 37.16 0.37 -0.89 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.13 16 8 C -0.10 -1.09 4.16 -29.04 -0.12 -1.21 16 9 C 0.51 7.26 7.67 -10.98 -0.08 7.17 16 10 O -0.54 -9.56 15.39 5.55 0.09 -9.48 16 11 N -0.61 -8.49 2.99 -172.20 -0.52 -9.01 16 12 C 0.11 1.34 6.23 -3.27 -0.02 1.32 16 13 C -0.13 -2.07 5.56 -26.76 -0.15 -2.22 16 14 C 0.17 3.22 2.61 -67.61 -0.18 3.04 16 15 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 16 C -0.12 -2.16 2.81 -89.34 -0.25 -2.41 16 17 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 18 C -0.14 -2.52 6.56 -25.13 -0.16 -2.69 16 19 C 0.18 4.29 5.46 -1.92 -0.01 4.28 16 20 N -0.60 -14.64 3.37 -162.60 -0.55 -15.19 16 21 C -0.23 -6.06 9.89 -15.06 -0.15 -6.21 16 22 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -26.81 10.44 55.49 0.58 -26.23 16 25 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.13 1.93 5.96 -3.74 -0.02 1.91 16 30 C -0.10 -1.17 9.36 -39.58 -0.37 -1.54 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.10 0.83 7.92 -51.93 -0.41 0.42 16 40 H 0.10 0.92 7.50 -51.93 -0.39 0.54 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.75 5.83 -51.93 -0.30 0.44 16 43 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 44 H 0.08 1.24 7.67 -51.93 -0.40 0.84 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 47 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 48 H 0.04 1.02 7.77 -51.93 -0.40 0.62 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 51 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 52 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.32 405.66 -11.78 -44.10 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.90 Total: 0.87 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.58 Total: -7.89 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.48 Total: -50.43 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.32 -11.78 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds