Wall clock time and date at job start Wed Apr 1 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47057 * 2 1 4 4 C 1.38254 * 120.00254 * 89.99954 * 3 2 1 5 5 C 1.38212 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.99650 * 0.26336 * 5 4 3 7 7 C 1.38209 * 120.00092 * 359.45889 * 6 5 4 8 8 C 1.50699 * 120.00241 * 180.28376 * 7 6 5 9 9 C 1.50698 * 109.46819 * 270.27804 * 8 7 6 10 10 O 1.21288 * 120.00225 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00248 * 179.97438 * 9 8 7 12 12 C 1.46597 * 119.68067 * 359.72939 * 11 9 8 13 13 C 1.54376 * 110.35093 * 132.09763 * 12 11 9 14 14 C 1.51518 * 107.26358 * 51.31908 * 13 12 11 15 15 H 1.09000 * 108.81907 * 53.29872 * 14 13 12 16 16 C 1.55368 * 107.78250 * 294.99728 * 14 13 12 17 17 H 1.09001 * 111.50271 * 309.61985 * 16 14 13 18 18 C 1.53739 * 101.00782 * 191.29262 * 16 14 13 19 19 C 1.55289 * 101.84076 * 38.63230 * 18 16 14 20 20 N 1.46153 * 118.26247 * 177.80994 * 14 13 12 21 21 C 1.36943 * 125.88296 * 329.05534 * 20 14 13 22 22 H 1.07990 * 119.99941 * 359.05272 * 21 20 14 23 23 C 1.38811 * 119.99519 * 179.05274 * 21 20 14 24 24 N 1.31612 * 120.00694 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99589 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46839 * 89.99805 * 25 23 21 27 27 H 1.48494 * 109.47315 * 210.00346 * 25 23 21 28 28 H 1.48507 * 109.46945 * 330.00373 * 25 23 21 29 29 C 1.47718 * 119.68597 * 180.02562 * 11 9 8 30 30 C 1.38216 * 120.00020 * 270.02241 * 3 2 1 31 31 H 1.08997 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47130 * 300.00158 * 1 2 3 33 33 H 1.09006 * 109.47018 * 59.99966 * 1 2 3 34 34 H 1.08996 * 109.47130 * 239.99842 * 2 1 3 35 35 H 1.08999 * 109.47305 * 119.99784 * 2 1 3 36 36 H 1.07999 * 119.99740 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99812 * 179.97438 * 5 4 3 38 38 H 1.08004 * 119.99616 * 179.72197 * 6 5 4 39 39 H 1.09007 * 109.47085 * 30.27502 * 8 7 6 40 40 H 1.09002 * 109.47462 * 150.27727 * 8 7 6 41 41 H 1.09001 * 109.25773 * 252.46712 * 12 11 9 42 42 H 1.09001 * 109.25859 * 11.89421 * 12 11 9 43 43 H 1.08994 * 110.04369 * 291.81401 * 13 12 11 44 44 H 1.08998 * 109.86012 * 170.71602 * 13 12 11 45 45 H 1.08995 * 110.95235 * 156.76759 * 18 16 14 46 46 H 1.09000 * 110.95177 * 280.45727 * 18 16 14 47 47 H 1.08994 * 109.92427 * 96.86823 * 19 18 16 48 48 H 1.08999 * 109.91601 * 217.97396 * 19 18 16 49 49 H 0.97000 * 120.00198 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.07044 * 351.26011 * 29 11 9 51 51 H 1.08999 * 110.07245 * 112.74087 * 29 11 9 52 52 H 1.08001 * 119.99686 * 359.97250 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7230 3.3759 1.1973 6 6 2.9477 4.0296 -0.0001 7 6 2.7228 3.3761 -1.1970 8 6 2.9739 4.0865 -2.5021 9 6 1.7179 4.7968 -2.9370 10 8 0.7173 4.7321 -2.2546 11 7 1.7065 5.5040 -4.0844 12 6 2.9215 5.5825 -4.9008 13 6 2.5937 5.2896 -6.3807 14 6 1.4385 6.1887 -6.7718 15 1 1.6966 7.2191 -6.5275 16 6 0.2002 5.7604 -5.9369 17 1 0.0310 4.6852 -5.9958 18 6 -0.9172 6.5415 -6.6474 19 6 -0.4935 6.4205 -8.1364 20 7 0.9615 6.1414 -8.1525 21 6 1.7248 5.8698 -9.2566 22 1 2.7825 5.6809 -9.1486 23 6 1.1387 5.8372 -10.5145 24 7 -0.1503 6.0679 -10.6462 25 14 2.1800 5.4674 -12.0207 26 1 2.1965 4.0025 -12.2635 27 1 1.6045 6.1587 -13.2022 28 1 3.5670 5.9471 -11.7935 29 6 0.4717 6.1979 -4.5037 30 6 2.2623 2.0725 -1.1970 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0832 1.5634 2.1326 37 1 2.9026 3.8851 2.1327 38 1 3.3030 5.0495 -0.0001 39 1 3.7757 4.8133 -2.3718 40 1 3.2620 3.3599 -3.2618 41 1 3.3486 6.5816 -4.8147 42 1 3.6448 4.8509 -4.5404 43 1 2.3073 4.2448 -6.5002 44 1 3.4615 5.5093 -7.0027 45 1 -1.8873 6.0740 -6.4790 46 1 -0.9281 7.5836 -6.3280 47 1 -1.0340 5.6016 -8.6111 48 1 -0.7013 7.3544 -8.6587 49 1 -0.5597 6.0455 -11.5253 50 1 -0.3581 5.9065 -3.8600 51 1 0.6165 7.2774 -4.4613 52 1 2.0823 1.5633 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036753544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:53 Heat of formation + Delta-G solvation = -9.535661 kcal Electronic energy + Delta-G solvation = -30044.523632 eV Core-core repulsion = 26201.145317 eV Total energy + Delta-G solvation = -3843.378315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.56587 -40.40416 -39.41862 -36.76093 -35.34785 -34.55662 -33.36411 -32.95368 -31.41524 -30.41138 -29.86864 -28.28910 -26.63501 -24.92681 -24.77610 -23.76287 -22.95651 -21.91211 -21.61129 -21.01980 -19.85994 -18.65382 -17.84689 -17.42803 -16.98010 -16.83469 -16.70601 -16.13900 -15.95892 -15.77145 -15.61417 -15.06735 -14.85236 -14.61604 -14.50821 -14.20370 -14.13927 -13.91625 -13.85900 -13.76494 -13.31780 -13.14892 -13.12000 -12.92542 -12.83589 -12.66426 -12.59105 -12.46532 -12.17479 -12.05043 -11.99535 -11.79121 -11.67522 -11.61373 -11.59023 -11.50389 -11.01193 -10.81429 -10.70229 -9.66949 -9.64444 -9.46366 -8.86704 -7.82281 -5.16693 0.45431 0.54159 1.46513 1.48085 1.56407 1.64806 2.01725 2.51323 2.88350 3.36303 3.43652 3.68138 3.73034 3.84651 3.86787 3.94827 4.01552 4.03842 4.22702 4.24377 4.25166 4.29245 4.39626 4.41394 4.50107 4.51300 4.58129 4.61072 4.66089 4.71044 4.73088 4.78450 4.83538 4.84457 4.93100 5.01244 5.05844 5.06186 5.08629 5.22088 5.23416 5.25011 5.36679 5.47455 5.54703 5.57322 5.61037 5.66056 5.69658 5.76258 5.76732 6.17176 6.21221 6.43708 7.10311 7.19225 7.80555 8.48702 9.29729 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.002312 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.066284 B =12109.238131 C =12282.949993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.098 4.098 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.117 3.883 13 C -0.124 4.124 14 C 0.156 3.844 15 H 0.024 0.976 16 C -0.108 4.108 17 H 0.058 0.942 18 C -0.123 4.123 19 C 0.184 3.816 20 N -0.617 5.617 21 C -0.227 4.227 22 H 0.090 0.910 23 C -0.073 4.073 24 N -0.957 5.957 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.300 1.300 28 H -0.264 1.264 29 C 0.135 3.865 30 C -0.123 4.123 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.014 0.986 48 H 0.005 0.995 49 H 0.244 0.756 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -6.766 24.109 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.137 4.137 9 C 0.302 3.698 10 O -0.459 6.459 11 N -0.343 5.343 12 C -0.006 4.006 13 C -0.163 4.163 14 C 0.049 3.951 15 H 0.041 0.959 16 C -0.128 4.128 17 H 0.077 0.923 18 C -0.161 4.161 19 C 0.060 3.940 20 N -0.342 5.342 21 C -0.356 4.356 22 H 0.108 0.892 23 C -0.266 4.266 24 N -0.606 5.606 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.189 1.189 29 C 0.012 3.988 30 C -0.141 4.141 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.032 0.968 48 H 0.023 0.977 49 H 0.053 0.947 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.352 -6.784 24.223 26.505 hybrid contribution -0.245 -0.011 -1.709 1.726 sum 8.106 -6.795 22.514 24.875 Atomic orbital electron populations 1.21734 0.94928 1.02234 1.01417 1.20571 0.95964 0.91791 1.03650 1.20128 0.98806 0.97247 0.93106 1.21281 1.00049 0.95366 0.97982 1.21385 0.99169 0.95106 0.98533 1.21211 1.00796 1.00044 0.92172 1.19488 0.99459 0.94133 0.94435 1.20803 0.95830 1.01007 0.96044 1.21114 0.90494 0.78099 0.80059 1.90684 1.37073 1.63224 1.54968 1.48402 1.13165 1.50359 1.22339 1.22008 0.85526 1.04263 0.88753 1.21894 0.98870 0.99441 0.96132 1.21010 0.93706 0.96424 0.83944 0.95865 1.22444 0.96757 0.99092 0.94522 0.92304 1.22574 0.97994 1.00397 0.95178 1.21252 0.83877 0.96971 0.91939 1.44704 1.05238 1.82561 1.01665 1.19447 0.92063 1.39075 0.85053 0.89249 1.25646 0.97196 1.03192 1.00523 1.70168 1.10933 1.57525 1.22007 0.85129 0.78316 0.77270 0.78972 1.21605 1.22647 1.18906 1.21424 0.87186 0.96756 0.93396 1.21041 0.99972 0.94954 0.98120 0.90957 0.92794 0.94261 0.90732 0.89522 0.84480 0.84132 0.85132 0.85002 0.86151 0.89526 0.86445 0.92771 0.90365 0.90716 0.90356 0.96765 0.97720 0.94683 0.90057 0.90007 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.90 71.98 0.71 -1.64 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 5 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.12 -2.44 9.70 22.27 0.22 -2.22 16 7 C -0.07 -1.58 4.37 -19.87 -0.09 -1.67 16 8 C -0.10 -1.74 4.16 29.10 0.12 -1.61 16 9 C 0.51 13.31 7.67 87.66 0.67 13.98 16 10 O -0.58 -19.94 15.39 -3.05 -0.05 -19.99 16 11 N -0.61 -15.38 2.99 -817.09 -2.45 -17.82 16 12 C 0.12 2.41 6.23 86.83 0.54 2.95 16 13 C -0.12 -3.72 5.56 30.58 0.17 -3.55 16 14 C 0.16 5.91 2.61 45.39 0.12 6.02 16 15 H 0.02 0.90 7.92 -2.39 -0.02 0.88 16 16 C -0.11 -3.74 2.81 -9.97 -0.03 -3.77 16 17 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 18 C -0.12 -4.56 6.56 31.63 0.21 -4.35 16 19 C 0.18 9.21 5.46 86.85 0.47 9.68 16 20 N -0.62 -30.84 3.37 -668.34 -2.25 -33.09 16 21 C -0.23 -12.31 9.89 84.03 0.83 -11.47 16 22 H 0.09 4.50 7.27 -2.92 -0.02 4.48 16 23 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 24 N -0.96 -58.13 10.44 21.65 0.23 -57.91 16 25 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.14 3.88 5.96 85.91 0.51 4.39 16 30 C -0.12 -2.69 9.36 22.27 0.21 -2.48 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 35 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.13 1.54 7.92 -2.38 -0.02 1.52 16 40 H 0.12 1.73 7.50 -2.39 -0.02 1.71 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.12 1.60 5.83 -2.39 -0.01 1.58 16 43 H 0.05 1.77 8.11 -2.39 -0.02 1.75 16 44 H 0.08 2.33 7.67 -2.39 -0.02 2.31 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 47 H 0.01 0.80 7.21 -2.39 -0.02 0.78 16 48 H 0.00 0.25 7.77 -2.39 -0.02 0.24 16 49 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 50 H 0.08 2.51 6.99 -2.39 -0.02 2.49 16 51 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 52 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -73.68 405.66 4.04 -69.64 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.88 Total: 18.26 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.65 Total: -6.51 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.47 Total: -108.82 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.68 4.04 -69.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.100 kcal (2) G-P(sol) polarization free energy of solvation -73.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds