Wall clock time and date at job start Wed Apr 1 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47455 * 2 1 4 4 C 1.38254 * 120.00244 * 89.99614 * 3 2 1 5 5 C 1.38219 * 119.99993 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99601 * 359.95958 * 6 5 4 8 8 C 1.50701 * 119.99393 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47237 * 90.00324 * 8 7 6 10 10 O 1.21284 * 119.99561 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00107 * 179.97438 * 9 8 7 12 12 C 1.46596 * 119.68558 * 359.97438 * 11 9 8 13 13 C 1.53952 * 110.58074 * 227.81968 * 12 11 9 14 14 C 1.51511 * 107.34512 * 308.94781 * 13 12 11 15 15 H 1.08995 * 109.28731 * 306.96984 * 14 13 12 16 16 C 1.55367 * 107.78804 * 64.86036 * 14 13 12 17 17 H 1.09002 * 111.50783 * 50.39018 * 16 14 13 18 18 C 1.53741 * 100.22142 * 169.06655 * 16 14 13 19 19 C 1.55233 * 101.74825 * 320.68937 * 18 16 14 20 20 N 1.45467 * 117.34331 * 181.90168 * 14 13 12 21 21 C 1.36939 * 126.40696 * 30.63817 * 20 14 13 22 22 H 1.08006 * 119.99848 * 340.74347 * 21 20 14 23 23 C 1.38813 * 120.00294 * 160.73610 * 21 20 14 24 24 N 1.31619 * 119.99766 * 173.49811 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 353.50325 * 23 21 20 26 26 H 1.48502 * 109.47434 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47102 * 59.99745 * 25 23 21 28 28 H 1.48500 * 109.47257 * 299.99934 * 25 23 21 29 29 C 1.47721 * 119.68109 * 180.02562 * 11 9 8 30 30 C 1.38216 * 119.99797 * 270.20954 * 3 2 1 31 31 H 1.09005 * 109.46871 * 60.00773 * 1 2 3 32 32 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47037 * 300.00566 * 1 2 3 34 34 H 1.09004 * 109.47596 * 239.99338 * 2 1 3 35 35 H 1.09009 * 109.46936 * 119.99981 * 2 1 3 36 36 H 1.08006 * 120.00020 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.99808 * 180.02562 * 5 4 3 38 38 H 1.07992 * 119.99733 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.47282 * 330.00254 * 8 7 6 40 40 H 1.09007 * 109.47119 * 209.99636 * 8 7 6 41 41 H 1.09000 * 109.25164 * 107.53397 * 12 11 9 42 42 H 1.08999 * 109.22180 * 348.08769 * 12 11 9 43 43 H 1.09003 * 109.87635 * 189.48825 * 13 12 11 44 44 H 1.09004 * 109.94267 * 68.44896 * 13 12 11 45 45 H 1.09004 * 110.94896 * 79.04608 * 18 16 14 46 46 H 1.09002 * 110.95894 * 202.77008 * 18 16 14 47 47 H 1.08997 * 110.02565 * 263.43598 * 19 18 16 48 48 H 1.09001 * 109.78916 * 142.15053 * 19 18 16 49 49 H 0.96995 * 120.00368 * 354.95373 * 24 23 21 50 50 H 1.09005 * 110.06648 * 247.15464 * 29 11 9 51 51 H 1.08998 * 110.07193 * 8.72387 * 29 11 9 52 52 H 1.07998 * 120.00235 * 0.04011 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.1973 5 6 2.7241 3.3755 1.1972 6 6 2.9546 4.0271 -0.0001 7 6 2.7245 3.3754 -1.1970 8 6 2.9753 4.0860 -2.5021 9 6 4.3987 3.8499 -2.9373 10 8 5.1369 3.1718 -2.2545 11 7 4.8512 4.3923 -4.0851 12 6 3.9528 5.2102 -4.9053 13 6 4.0258 4.7800 -6.3816 14 6 5.4894 4.7546 -6.7728 15 1 5.9447 5.7136 -6.5258 16 6 6.1849 3.6449 -5.9370 17 1 5.6420 2.7014 -5.9951 18 6 7.5423 3.5728 -6.6551 19 6 7.1227 3.7323 -8.1411 20 7 5.8069 4.4132 -8.1507 21 6 5.0318 4.6681 -9.2505 22 1 3.9783 4.8748 -9.1325 23 6 5.6002 4.6612 -10.5169 24 7 4.8358 4.7787 -11.5819 25 14 7.4498 4.4849 -10.7096 26 1 7.8015 4.5057 -12.1522 27 1 7.8893 3.1985 -10.1119 28 1 8.1290 5.6097 -10.0178 29 6 6.2476 4.1558 -4.5051 30 6 2.2586 2.0737 -1.1970 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.0831 1.5633 2.1327 37 1 2.9044 3.8845 2.1325 38 1 3.3146 5.0453 -0.0001 39 1 2.8078 5.1551 -2.3718 40 1 2.2947 3.7014 -3.2618 41 1 4.2431 6.2575 -4.8212 42 1 2.9306 5.0907 -4.5461 43 1 3.4883 5.4961 -7.0033 44 1 3.5927 3.7869 -6.5014 45 1 8.1937 4.3881 -6.3399 46 1 8.0205 2.6074 -6.4892 47 1 7.0375 2.7530 -8.6120 48 1 7.8585 4.3386 -8.6693 49 1 3.8707 4.7964 -11.4867 50 1 6.8129 5.0870 -4.4652 51 1 6.7104 3.4081 -3.8612 52 1 2.0747 1.5660 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036753545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:59 Heat of formation + Delta-G solvation = 15.423563 kcal Electronic energy + Delta-G solvation = -30058.730252 eV Core-core repulsion = 26216.434251 eV Total energy + Delta-G solvation = -3842.296002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.57102 -39.57373 -38.37232 -35.61534 -34.66751 -33.05375 -32.49896 -31.67534 -30.48835 -29.70246 -28.63967 -27.48134 -24.90148 -24.16616 -23.35615 -22.69912 -22.19808 -20.84219 -20.56885 -19.75215 -18.87247 -17.43736 -16.84834 -16.68054 -16.10106 -15.86706 -15.30629 -15.13450 -15.10980 -14.83343 -14.13140 -14.07824 -13.91628 -13.82139 -13.34015 -13.30253 -13.25713 -12.93540 -12.79478 -12.76499 -12.36143 -12.21506 -12.08741 -11.95394 -11.88330 -11.49606 -11.42302 -11.17487 -11.02595 -10.96728 -10.88071 -10.83849 -10.59684 -10.04706 -9.91596 -9.71492 -9.19832 -9.05802 -8.91716 -8.74964 -8.72632 -8.59731 -7.02063 -6.32630 -3.30199 1.18383 1.26536 2.62542 2.97638 3.41449 3.47614 3.62563 3.69790 4.41956 4.48692 4.56090 4.60254 4.64682 4.73532 4.88889 4.92752 4.94085 5.03074 5.08179 5.09429 5.16386 5.22936 5.25124 5.28894 5.36056 5.39207 5.43222 5.47133 5.54130 5.62503 5.63450 5.63863 5.79761 5.84542 5.87714 5.92038 5.96056 5.97884 6.03929 6.10173 6.22731 6.26160 6.30909 6.41383 6.42698 6.45825 6.47177 6.66840 6.76587 6.86295 6.89215 7.40396 7.71144 8.17950 8.30757 9.00017 9.55111 10.23872 11.17804 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002311 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.498189 B =12114.621134 C =12462.271226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.104 4.104 9 C 0.514 3.486 10 O -0.538 6.538 11 N -0.609 5.609 12 C 0.110 3.890 13 C -0.127 4.127 14 C 0.168 3.832 15 H 0.025 0.975 16 C -0.126 4.126 17 H 0.082 0.918 18 C -0.120 4.120 19 C 0.109 3.891 20 N -0.604 5.604 21 C -0.318 4.318 22 H 0.076 0.924 23 C -0.020 4.020 24 N -0.931 5.931 25 Si 1.073 2.927 26 H -0.302 1.302 27 H -0.284 1.284 28 H -0.297 1.297 29 C 0.127 3.873 30 C -0.102 4.102 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.031 0.969 49 H 0.261 0.739 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -3.362 24.812 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.302 3.698 10 O -0.415 6.415 11 N -0.343 5.343 12 C -0.013 4.013 13 C -0.167 4.167 14 C 0.060 3.940 15 H 0.042 0.958 16 C -0.147 4.147 17 H 0.100 0.900 18 C -0.158 4.158 19 C -0.015 4.015 20 N -0.330 5.330 21 C -0.445 4.445 22 H 0.094 0.906 23 C -0.219 4.219 24 N -0.573 5.573 25 Si 0.907 3.093 26 H -0.231 1.231 27 H -0.212 1.212 28 H -0.226 1.226 29 C 0.005 3.995 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.322 -3.695 23.939 24.605 hybrid contribution -1.256 0.167 0.964 1.592 sum -5.578 -3.529 24.903 25.762 Atomic orbital electron populations 1.21746 0.94727 1.01674 1.02183 1.20545 0.96128 0.92728 1.02912 1.19827 0.99141 0.96103 0.93073 1.20977 1.00547 0.95009 0.97349 1.21051 0.99673 0.94981 0.97787 1.20939 0.99933 0.99970 0.91994 1.19279 0.98634 0.94370 0.93637 1.20750 0.95086 1.02413 0.96131 1.20496 0.89340 0.79274 0.80674 1.90699 1.58227 1.38874 1.53708 1.48321 1.12767 1.51209 1.21979 1.21833 0.93311 0.94507 0.91690 1.21833 0.99024 1.02472 0.93329 1.20619 0.92931 0.94593 0.85906 0.95762 1.22677 0.97985 1.00392 0.93604 0.89967 1.22401 0.95989 1.01497 0.95918 1.22414 0.88409 0.96320 0.94348 1.44506 1.19460 1.67004 1.02058 1.20111 0.92154 1.47709 0.84550 0.90586 1.25966 1.06840 0.98248 0.90890 1.70899 1.05691 1.51316 1.29368 0.83814 0.75487 0.76419 0.73605 1.23077 1.21175 1.22552 1.21549 0.81459 1.01168 0.95294 1.20849 0.99580 0.93946 0.97653 0.92493 0.92431 0.92636 0.90981 0.91102 0.86387 0.86189 0.86378 0.87974 0.87878 0.91445 0.90070 0.90221 0.91490 0.91293 0.91234 0.93386 0.95167 0.92925 0.91287 0.89107 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.09 -0.69 6.06 -27.89 -0.17 -0.86 16 3 C -0.08 -0.83 5.13 -104.63 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 7 C -0.06 -0.66 4.37 -104.62 -0.46 -1.12 16 8 C -0.10 -1.06 4.16 -29.03 -0.12 -1.18 16 9 C 0.51 7.00 7.67 -10.99 -0.08 6.91 16 10 O -0.54 -9.21 15.39 5.55 0.09 -9.12 16 11 N -0.61 -8.12 3.00 -172.54 -0.52 -8.64 16 12 C 0.11 1.32 6.21 -3.49 -0.02 1.29 16 13 C -0.13 -2.04 5.40 -26.99 -0.15 -2.19 16 14 C 0.17 3.15 2.58 -67.98 -0.18 2.98 16 15 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 16 C -0.13 -2.06 2.85 -89.41 -0.26 -2.31 16 17 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 18 C -0.12 -1.96 6.54 -25.16 -0.16 -2.13 16 19 C 0.11 2.33 4.64 -1.95 -0.01 2.32 16 20 N -0.60 -14.25 3.22 -163.13 -0.53 -14.77 16 21 C -0.32 -8.78 10.21 -15.06 -0.15 -8.93 16 22 H 0.08 2.19 7.47 -52.48 -0.39 1.80 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.93 -28.96 13.70 55.49 0.76 -28.20 16 25 Si 1.07 26.69 24.62 -169.99 -4.18 22.50 16 26 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.28 -6.46 5.31 56.52 0.30 -6.16 16 28 H -0.30 -7.16 6.91 56.52 0.39 -6.76 16 29 C 0.13 1.81 5.95 -3.80 -0.02 1.79 16 30 C -0.10 -1.14 9.36 -39.58 -0.37 -1.51 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 36 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.10 0.90 7.49 -51.92 -0.39 0.51 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.75 5.83 -51.93 -0.30 0.45 16 43 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 44 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 45 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 1.07 6.87 -51.93 -0.36 0.72 16 48 H 0.03 0.68 4.01 -51.93 -0.21 0.47 16 49 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 50 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 51 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 52 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -33.72 397.73 -10.80 -44.52 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.83 Total: -0.03 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.58 Total: -12.25 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.28 Total: -51.61 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -4.18 Total: 22.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.72 -10.80 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.939 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds