Wall clock time and date at job start Wed Apr 1 2020 02:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47455 * 2 1 4 4 C 1.38254 * 120.00244 * 89.99614 * 3 2 1 5 5 C 1.38219 * 119.99993 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99601 * 359.95958 * 6 5 4 8 8 C 1.50701 * 119.99393 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47237 * 90.00324 * 8 7 6 10 10 O 1.21284 * 119.99561 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00107 * 179.97438 * 9 8 7 12 12 C 1.46596 * 119.68558 * 359.97438 * 11 9 8 13 13 C 1.53952 * 110.58074 * 227.81968 * 12 11 9 14 14 C 1.51511 * 107.34512 * 308.94781 * 13 12 11 15 15 H 1.08995 * 109.28731 * 306.96984 * 14 13 12 16 16 C 1.55367 * 107.78804 * 64.86036 * 14 13 12 17 17 H 1.09002 * 111.50783 * 50.39018 * 16 14 13 18 18 C 1.53741 * 100.22142 * 169.06655 * 16 14 13 19 19 C 1.55233 * 101.74825 * 320.68937 * 18 16 14 20 20 N 1.45467 * 117.34331 * 181.90168 * 14 13 12 21 21 C 1.36939 * 126.40696 * 30.63817 * 20 14 13 22 22 H 1.08006 * 119.99848 * 340.74347 * 21 20 14 23 23 C 1.38813 * 120.00294 * 160.73610 * 21 20 14 24 24 N 1.31619 * 119.99766 * 173.49811 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 353.50325 * 23 21 20 26 26 H 1.48502 * 109.47434 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47102 * 59.99745 * 25 23 21 28 28 H 1.48500 * 109.47257 * 299.99934 * 25 23 21 29 29 C 1.47721 * 119.68109 * 180.02562 * 11 9 8 30 30 C 1.38216 * 119.99797 * 270.20954 * 3 2 1 31 31 H 1.09005 * 109.46871 * 60.00773 * 1 2 3 32 32 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47037 * 300.00566 * 1 2 3 34 34 H 1.09004 * 109.47596 * 239.99338 * 2 1 3 35 35 H 1.09009 * 109.46936 * 119.99981 * 2 1 3 36 36 H 1.08006 * 120.00020 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.99808 * 180.02562 * 5 4 3 38 38 H 1.07992 * 119.99733 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.47282 * 330.00254 * 8 7 6 40 40 H 1.09007 * 109.47119 * 209.99636 * 8 7 6 41 41 H 1.09000 * 109.25164 * 107.53397 * 12 11 9 42 42 H 1.08999 * 109.22180 * 348.08769 * 12 11 9 43 43 H 1.09003 * 109.87635 * 189.48825 * 13 12 11 44 44 H 1.09004 * 109.94267 * 68.44896 * 13 12 11 45 45 H 1.09004 * 110.94896 * 79.04608 * 18 16 14 46 46 H 1.09002 * 110.95894 * 202.77008 * 18 16 14 47 47 H 1.08997 * 110.02565 * 263.43598 * 19 18 16 48 48 H 1.09001 * 109.78916 * 142.15053 * 19 18 16 49 49 H 0.96995 * 120.00368 * 354.95373 * 24 23 21 50 50 H 1.09005 * 110.06648 * 247.15464 * 29 11 9 51 51 H 1.08998 * 110.07193 * 8.72387 * 29 11 9 52 52 H 1.07998 * 120.00235 * 0.04011 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.1973 5 6 2.7241 3.3755 1.1972 6 6 2.9546 4.0271 -0.0001 7 6 2.7245 3.3754 -1.1970 8 6 2.9753 4.0860 -2.5021 9 6 4.3987 3.8499 -2.9373 10 8 5.1369 3.1718 -2.2545 11 7 4.8512 4.3923 -4.0851 12 6 3.9528 5.2102 -4.9053 13 6 4.0258 4.7800 -6.3816 14 6 5.4894 4.7546 -6.7728 15 1 5.9447 5.7136 -6.5258 16 6 6.1849 3.6449 -5.9370 17 1 5.6420 2.7014 -5.9951 18 6 7.5423 3.5728 -6.6551 19 6 7.1227 3.7323 -8.1411 20 7 5.8069 4.4132 -8.1507 21 6 5.0318 4.6681 -9.2505 22 1 3.9783 4.8748 -9.1325 23 6 5.6002 4.6612 -10.5169 24 7 4.8358 4.7787 -11.5819 25 14 7.4498 4.4849 -10.7096 26 1 7.8015 4.5057 -12.1522 27 1 7.8893 3.1985 -10.1119 28 1 8.1290 5.6097 -10.0178 29 6 6.2476 4.1558 -4.5051 30 6 2.2586 2.0737 -1.1970 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.0831 1.5633 2.1327 37 1 2.9044 3.8845 2.1325 38 1 3.3146 5.0453 -0.0001 39 1 2.8078 5.1551 -2.3718 40 1 2.2947 3.7014 -3.2618 41 1 4.2431 6.2575 -4.8212 42 1 2.9306 5.0907 -4.5461 43 1 3.4883 5.4961 -7.0033 44 1 3.5927 3.7869 -6.5014 45 1 8.1937 4.3881 -6.3399 46 1 8.0205 2.6074 -6.4892 47 1 7.0375 2.7530 -8.6120 48 1 7.8585 4.3386 -8.6693 49 1 3.8707 4.7964 -11.4867 50 1 6.8129 5.0870 -4.4652 51 1 6.7104 3.4081 -3.8612 52 1 2.0747 1.5660 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036753545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:58 Heat of formation + Delta-G solvation = -3.603392 kcal Electronic energy + Delta-G solvation = -30059.555323 eV Core-core repulsion = 26216.434251 eV Total energy + Delta-G solvation = -3843.121072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.67418 -40.51960 -39.57938 -36.95192 -35.37382 -34.79971 -33.46803 -33.06061 -32.01067 -30.44364 -29.96161 -28.45453 -26.46589 -24.89059 -24.77204 -24.01071 -22.98871 -22.21547 -21.68475 -21.05906 -20.00221 -19.25827 -18.03695 -17.48998 -17.13037 -16.87317 -16.74066 -16.57541 -16.06771 -15.83017 -15.64169 -15.21379 -14.89215 -14.78137 -14.63747 -14.48606 -14.27319 -14.03486 -13.99866 -13.81490 -13.61999 -13.47764 -13.03643 -12.92326 -12.82472 -12.69976 -12.59565 -12.42001 -12.26512 -12.20959 -12.08484 -11.70117 -11.63900 -11.62881 -11.35656 -11.21233 -10.97364 -10.86789 -10.66650 -9.72523 -9.67361 -9.48611 -9.02359 -8.60564 -5.49671 0.43027 0.51804 1.41444 1.49278 1.59952 1.71536 1.96369 2.55964 2.85757 3.11412 3.22654 3.57515 3.66279 3.72796 3.80817 3.85401 3.87183 3.99201 4.08245 4.10323 4.22676 4.26838 4.33112 4.34477 4.36486 4.49119 4.49247 4.54894 4.56313 4.58396 4.69248 4.72824 4.77500 4.78136 4.81040 4.83900 4.90016 4.95714 5.01406 5.07642 5.12774 5.20054 5.22458 5.27635 5.36945 5.44043 5.52554 5.58789 5.65045 5.67063 5.73923 6.14128 6.14515 6.37165 6.82803 7.14304 7.48955 8.16443 8.91880 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002311 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.498189 B =12114.621134 C =12462.271226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.576 6.576 11 N -0.610 5.610 12 C 0.119 3.881 13 C -0.124 4.124 14 C 0.153 3.847 15 H 0.030 0.970 16 C -0.111 4.111 17 H 0.066 0.934 18 C -0.108 4.108 19 C 0.097 3.903 20 N -0.626 5.626 21 C -0.296 4.296 22 H 0.051 0.949 23 C -0.082 4.082 24 N -0.971 5.971 25 Si 1.108 2.892 26 H -0.316 1.316 27 H -0.252 1.252 28 H -0.284 1.284 29 C 0.133 3.867 30 C -0.123 4.123 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.034 0.966 48 H 0.028 0.972 49 H 0.247 0.753 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -3.165 27.995 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.138 4.138 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.343 5.343 12 C -0.003 4.003 13 C -0.163 4.163 14 C 0.047 3.953 15 H 0.047 0.953 16 C -0.131 4.131 17 H 0.084 0.916 18 C -0.147 4.147 19 C -0.027 4.027 20 N -0.352 5.352 21 C -0.425 4.425 22 H 0.069 0.931 23 C -0.274 4.274 24 N -0.616 5.616 25 Si 0.937 3.063 26 H -0.246 1.246 27 H -0.178 1.178 28 H -0.211 1.211 29 C 0.011 3.989 30 C -0.141 4.141 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.103 0.897 51 H 0.106 0.894 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.593 -3.499 27.181 27.640 hybrid contribution -1.567 0.088 0.063 1.571 sum -5.161 -3.411 27.243 27.937 Atomic orbital electron populations 1.21715 0.93863 1.02376 1.01996 1.20581 0.96845 0.91726 1.03151 1.20115 0.98930 0.97003 0.93105 1.21283 1.00161 0.95253 0.97975 1.21388 0.99004 0.95164 0.98539 1.21206 1.00131 1.00755 0.92156 1.19471 0.99045 0.94586 0.94373 1.20802 0.92802 1.04167 0.96068 1.21037 0.90301 0.78140 0.80083 1.90684 1.59517 1.40473 1.54858 1.48383 1.12573 1.51231 1.22121 1.21856 0.95055 0.94916 0.88501 1.21767 0.96962 1.01342 0.96213 1.20925 0.95032 0.95607 0.83764 0.95260 1.22512 0.97396 0.98619 0.94582 0.91576 1.22410 0.96318 1.03866 0.92063 1.22551 0.87158 0.95108 0.97906 1.44647 1.20046 1.67607 1.02937 1.20020 0.91581 1.44827 0.86039 0.93120 1.27146 1.10174 0.99043 0.91052 1.70998 1.04976 1.55046 1.30578 0.83413 0.71524 0.78363 0.73006 1.24599 1.17756 1.21114 1.21457 0.82402 1.01736 0.93325 1.21025 1.00561 0.94441 0.98102 0.93163 0.91288 0.92314 0.91483 0.90106 0.84467 0.84086 0.85134 0.85189 0.86431 0.89622 0.86798 0.91781 0.93017 0.88982 0.88771 0.94807 0.95477 0.94400 0.89682 0.89395 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.09 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.76 5.13 -19.87 -0.10 -1.86 16 4 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 5 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 6 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 7 C -0.07 -1.55 4.37 -19.87 -0.09 -1.63 16 8 C -0.10 -1.75 4.16 29.10 0.12 -1.62 16 9 C 0.51 12.78 7.67 87.66 0.67 13.45 16 10 O -0.58 -18.80 15.39 -3.04 -0.05 -18.84 16 11 N -0.61 -14.57 3.00 -818.17 -2.46 -17.02 16 12 C 0.12 2.50 6.21 86.68 0.54 3.04 16 13 C -0.12 -3.85 5.40 30.43 0.16 -3.68 16 14 C 0.15 5.56 2.58 45.51 0.12 5.67 16 15 H 0.03 1.07 7.90 -2.39 -0.02 1.05 16 16 C -0.11 -3.37 2.85 -10.01 -0.03 -3.40 16 17 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 18 C -0.11 -3.22 6.54 31.61 0.21 -3.02 16 19 C 0.10 3.95 4.64 86.83 0.40 4.36 16 20 N -0.63 -29.26 3.22 -670.03 -2.16 -31.42 16 21 C -0.30 -16.71 10.21 84.03 0.86 -15.85 16 22 H 0.05 3.05 7.47 -2.91 -0.02 3.03 16 23 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 24 N -0.97 -62.66 13.70 21.65 0.30 -62.37 16 25 Si 1.11 54.13 24.62 68.60 1.69 55.82 16 26 H -0.32 -16.07 7.11 99.48 0.71 -15.37 16 27 H -0.25 -10.91 5.31 99.48 0.53 -10.38 16 28 H -0.28 -13.06 6.91 99.48 0.69 -12.37 16 29 C 0.13 3.40 5.95 85.87 0.51 3.91 16 30 C -0.12 -2.64 9.36 22.27 0.21 -2.44 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 35 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.13 1.55 7.94 -2.39 -0.02 1.53 16 40 H 0.12 1.72 7.49 -2.38 -0.02 1.71 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.11 1.68 5.83 -2.39 -0.01 1.67 16 43 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 44 H 0.05 1.74 8.11 -2.39 -0.02 1.72 16 45 H 0.09 2.35 8.12 -2.38 -0.02 2.34 16 46 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.03 1.47 6.87 -2.39 -0.02 1.45 16 48 H 0.03 1.16 4.01 -2.39 -0.01 1.15 16 49 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 50 H 0.09 1.94 8.06 -2.38 -0.02 1.92 16 51 H 0.09 2.37 7.00 -2.39 -0.02 2.35 16 52 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.05 397.73 3.58 -72.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.65 Total: 17.13 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 5.60 Total: -15.78 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.32 Total: -110.81 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 1.69 Total: 55.82 kcal Total: -76.05 3.58 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036753545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.875 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds