Wall clock time and date at job start Wed Apr 1 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38249 * 120.00041 * 2 1 4 4 C 1.38217 * 120.00361 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99609 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99953 * 179.97438 * 5 4 3 7 7 C 1.38216 * 120.00240 * 359.95824 * 5 4 3 8 8 C 1.50695 * 120.00180 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47431 * 84.99752 * 8 7 5 10 10 O 1.21288 * 119.99800 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00492 * 180.02562 * 9 8 7 12 12 C 1.47148 * 121.00777 * 359.97438 * 11 9 8 13 13 C 1.53044 * 107.68019 * 122.53730 * 12 11 9 14 14 C 1.51150 * 111.06152 * 54.44609 * 13 12 11 15 15 H 1.08995 * 108.45921 * 184.58150 * 14 13 12 16 16 C 1.53991 * 113.17071 * 304.77455 * 14 13 12 17 17 H 1.09000 * 112.76624 * 284.88810 * 16 14 13 18 18 C 1.56022 * 100.36885 * 163.73162 * 16 14 13 19 19 C 1.54663 * 102.58528 * 323.07556 * 18 16 14 20 20 N 1.46458 * 113.22563 * 65.03750 * 14 13 12 21 21 C 1.36939 * 126.05513 * 29.48462 * 20 14 13 22 22 H 1.08000 * 120.00093 * 359.97438 * 21 20 14 23 23 C 1.38818 * 119.99948 * 179.97438 * 21 20 14 24 24 N 1.31622 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47133 * 90.00195 * 25 23 21 27 27 H 1.48498 * 109.47120 * 210.00645 * 25 23 21 28 28 H 1.48506 * 109.46932 * 330.00104 * 25 23 21 29 29 C 1.46518 * 121.01278 * 179.97438 * 11 9 8 30 30 C 1.38221 * 119.99926 * 180.21066 * 2 1 3 31 31 H 1.09004 * 109.47329 * 90.00125 * 1 2 3 32 32 H 1.09005 * 109.47174 * 209.99898 * 1 2 3 33 33 H 1.09001 * 109.47493 * 329.99724 * 1 2 3 34 34 H 1.08008 * 120.00383 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.00525 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.46658 * 269.98123 * 6 5 4 37 37 H 1.09001 * 109.47187 * 29.97536 * 6 5 4 38 38 H 1.09002 * 109.47090 * 149.97771 * 6 5 4 39 39 H 1.09005 * 109.47230 * 324.99669 * 8 7 5 40 40 H 1.08996 * 109.47049 * 205.00025 * 8 7 5 41 41 H 1.09002 * 109.81732 * 2.99318 * 12 11 9 42 42 H 1.08997 * 109.86658 * 242.11420 * 12 11 9 43 43 H 1.09002 * 109.15168 * 174.83551 * 13 12 11 44 44 H 1.08999 * 109.15172 * 294.05513 * 13 12 11 45 45 H 1.08996 * 110.78262 * 81.46060 * 18 16 14 46 46 H 1.09004 * 110.77396 * 204.90129 * 18 16 14 47 47 H 1.09000 * 109.98876 * 263.51635 * 19 18 16 48 48 H 1.08998 * 109.99840 * 142.34553 * 19 18 16 49 49 H 0.96998 * 119.99841 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.34826 * 355.84268 * 29 11 9 51 51 H 1.09005 * 109.34574 * 115.53751 * 29 11 9 52 52 H 1.07994 * 120.00044 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5806 -1.1970 -0.0013 8 6 4.3341 -2.5021 -0.0019 9 6 4.6934 -2.8753 1.4132 10 8 4.3700 -2.1524 2.3319 11 7 5.3752 -4.0119 1.6581 12 6 5.7792 -4.9049 0.5605 13 6 7.3005 -5.0599 0.6235 14 6 7.7429 -5.5256 1.9917 15 1 8.8325 -5.5429 2.0147 16 6 7.2496 -4.6142 3.1307 17 1 7.8037 -3.6775 3.1915 18 6 7.4736 -5.5518 4.3575 19 6 7.1078 -6.9431 3.7896 20 7 7.2677 -6.8700 2.3258 21 6 7.0160 -7.8801 1.4361 22 1 7.1667 -7.7186 0.3790 23 6 6.5673 -9.1117 1.8931 24 7 6.3832 -9.3084 3.1815 25 14 6.2234 -10.4895 0.6795 26 1 7.4566 -11.2921 0.4792 27 1 5.1462 -11.3616 1.2128 28 1 5.7937 -9.9099 -0.6186 29 6 5.7365 -4.3959 3.0251 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6582 2.1327 0.0004 35 1 4.1204 2.1327 -0.0010 36 1 6.1411 0.0001 -1.0308 37 1 6.1424 0.8900 0.5108 38 1 6.1424 -0.8900 0.5107 39 1 5.2444 -2.3958 -0.5919 40 1 3.7089 -3.2823 -0.4358 41 1 5.4915 -4.4684 -0.3960 42 1 5.3033 -5.8781 0.6805 43 1 7.6168 -5.7894 -0.1221 44 1 7.7672 -4.0995 0.4044 45 1 8.5145 -5.5250 4.6798 46 1 6.8069 -5.2825 5.1768 47 1 6.0751 -7.1873 4.0383 48 1 7.7767 -7.7003 4.1986 49 1 6.0693 -10.1689 3.5007 50 1 5.4366 -3.6057 3.7134 51 1 5.2212 -5.3195 3.2889 52 1 1.6581 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036807895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:06 Heat of formation + Delta-G solvation = 6.877252 kcal Electronic energy + Delta-G solvation = -30970.440133 eV Core-core repulsion = 27127.773536 eV Total energy + Delta-G solvation = -3842.666597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.41702 -39.45957 -38.04558 -34.95387 -34.27168 -32.88913 -32.30667 -31.61469 -29.47340 -29.36499 -28.31225 -27.16037 -25.16274 -24.81698 -23.83923 -22.54083 -22.19171 -20.60980 -20.04124 -19.27040 -18.10826 -16.95824 -16.39554 -16.11292 -15.98096 -15.58489 -15.10963 -14.72218 -14.69177 -14.46334 -14.00970 -13.94346 -13.57048 -13.30595 -13.21594 -13.17282 -12.86852 -12.75073 -12.66538 -12.41966 -12.14287 -12.02031 -11.89635 -11.55032 -11.52482 -11.42852 -11.12082 -11.09411 -10.99302 -10.87750 -10.81073 -10.66301 -10.17697 -10.01989 -9.93355 -9.65710 -9.63120 -9.50980 -8.76464 -8.62963 -8.39532 -8.15282 -6.84417 -5.74790 -3.07535 1.30284 1.37675 2.89629 3.31363 3.36072 3.40787 3.43640 3.74742 4.45328 4.58917 4.69961 4.81238 4.84534 4.95054 5.10848 5.15845 5.18229 5.26634 5.34128 5.36088 5.43912 5.47793 5.48940 5.52125 5.54852 5.56655 5.60261 5.67260 5.68658 5.77498 5.85440 5.88523 6.02560 6.07020 6.13764 6.17729 6.26450 6.31514 6.35033 6.40417 6.43639 6.53453 6.54728 6.63582 6.70849 6.77323 6.88566 6.95861 7.00835 7.53497 7.59575 7.78915 7.81168 8.21878 8.47800 9.17490 9.79908 10.47806 11.37259 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.002872 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.441403 B = 9747.263447 C =10402.406045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.056 4.056 8 C -0.104 4.104 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.601 5.601 12 C 0.112 3.888 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.017 0.983 16 C -0.115 4.115 17 H 0.076 0.924 18 C -0.142 4.142 19 C 0.177 3.823 20 N -0.594 5.594 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.127 3.873 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 17.916 -7.372 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.056 4.056 8 C -0.144 4.144 9 C 0.303 3.697 10 O -0.422 6.422 11 N -0.333 5.333 12 C -0.011 4.011 13 C -0.167 4.167 14 C 0.062 3.938 15 H 0.035 0.965 16 C -0.136 4.136 17 H 0.094 0.906 18 C -0.181 4.181 19 C 0.052 3.948 20 N -0.320 5.320 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.004 3.996 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.158 18.039 -6.869 19.980 hybrid contribution -0.058 -0.994 -0.565 1.145 sum -5.216 17.045 -7.435 19.314 Atomic orbital electron populations 1.20761 0.91380 1.02702 1.02027 1.19811 0.95891 0.93096 1.00598 1.20939 0.94136 0.97287 1.01507 1.20929 0.94128 0.97235 1.01289 1.19672 0.95881 0.92545 0.99294 1.20812 0.91449 1.03099 1.01856 1.19162 0.93299 0.93274 0.99889 1.20724 1.01810 0.96061 0.95783 1.20341 0.78074 0.80584 0.90745 1.90684 1.54343 1.51013 1.46199 1.48092 1.54746 1.21675 1.08817 1.21803 0.96069 0.95007 0.88187 1.21591 0.95124 1.00376 0.99653 1.20252 0.95871 0.86382 0.91253 0.96545 1.22737 0.95494 0.97608 0.97714 0.90581 1.23155 1.00446 0.98093 0.96407 1.21269 1.00103 0.90314 0.83101 1.44324 1.78138 1.06906 1.02634 1.18942 1.37841 0.89785 0.88702 0.90361 1.24777 1.01795 0.97724 0.96036 1.69953 1.51873 1.23297 1.11550 0.86199 0.77598 0.82399 0.80017 1.21720 1.21800 1.20719 1.21535 0.94943 1.00855 0.82225 1.20854 0.93308 0.97620 1.00425 0.91405 0.91597 0.91736 0.86411 0.86276 0.91261 0.91583 0.91480 0.88023 0.88198 0.91041 0.89144 0.90616 0.92785 0.92364 0.92045 0.93538 0.93975 0.93785 0.90371 0.90461 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.09 -1.07 5.88 -104.63 -0.62 -1.68 16 3 C -0.12 -1.31 9.70 -39.59 -0.38 -1.70 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 5 C -0.07 -0.92 5.88 -104.62 -0.62 -1.53 16 6 C -0.12 -1.24 9.22 36.01 0.33 -0.90 16 7 C -0.06 -0.73 4.37 -104.63 -0.46 -1.18 16 8 C -0.10 -1.29 3.51 -29.04 -0.10 -1.39 16 9 C 0.51 8.22 6.93 -10.99 -0.08 8.15 16 10 O -0.54 -10.51 15.46 5.55 0.09 -10.42 16 11 N -0.60 -9.82 2.93 -172.97 -0.51 -10.32 16 12 C 0.11 1.72 6.26 -3.67 -0.02 1.70 16 13 C -0.13 -2.07 5.19 -27.64 -0.14 -2.21 16 14 C 0.17 3.25 2.84 -68.37 -0.19 3.05 16 15 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 16 C -0.12 -2.00 3.86 -88.36 -0.34 -2.34 16 17 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -2.59 6.30 -24.24 -0.15 -2.74 16 19 C 0.18 4.07 4.64 -2.66 -0.01 4.06 16 20 N -0.59 -13.79 3.12 -164.40 -0.51 -14.31 16 21 C -0.22 -5.69 9.01 -15.06 -0.14 -5.82 16 22 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -25.95 10.38 55.49 0.58 -25.37 16 25 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.13 2.26 5.46 -3.91 -0.02 2.24 16 30 C -0.10 -1.30 9.34 -39.58 -0.37 -1.67 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 39 H 0.10 1.07 6.63 -51.93 -0.34 0.73 16 40 H 0.10 1.08 7.80 -51.93 -0.41 0.68 16 41 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 42 H 0.09 1.66 7.47 -51.93 -0.39 1.27 16 43 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 47 H 0.05 1.19 6.98 -51.93 -0.36 0.83 16 48 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 51 H 0.08 1.56 6.78 -51.93 -0.35 1.21 16 52 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -30.70 395.98 -11.41 -42.12 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.57 Total: 2.78 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.43 Total: -6.57 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.44 Total: -50.00 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.70 -11.41 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036807895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.995 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds