Wall clock time and date at job start Wed Apr 1 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38249 * 120.00299 * 2 1 4 4 C 1.38219 * 120.00171 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99627 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99639 * 179.97438 * 5 4 3 7 7 C 1.38208 * 120.00506 * 359.97438 * 5 4 3 8 8 C 1.50703 * 120.00448 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47148 * 84.99701 * 8 7 5 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46521 * 120.97727 * 359.72157 * 11 9 8 13 13 C 1.51786 * 110.13491 * 233.77305 * 12 11 9 14 14 C 1.49512 * 115.07723 * 318.40061 * 13 12 11 15 15 H 1.09001 * 105.92393 * 156.45057 * 14 13 12 16 16 C 1.52679 * 116.96579 * 40.03996 * 14 13 12 17 17 H 1.08997 * 112.02487 * 82.85065 * 16 14 13 18 18 C 1.56118 * 101.71549 * 202.84797 * 16 14 13 19 19 C 1.55091 * 101.08434 * 37.84505 * 18 16 14 20 20 N 1.46253 * 114.17708 * 272.08738 * 14 13 12 21 21 C 1.36936 * 125.96419 * 315.56203 * 20 14 13 22 22 H 1.08001 * 119.99757 * 0.02562 * 21 20 14 23 23 C 1.38814 * 120.00144 * 180.02562 * 21 20 14 24 24 N 1.31614 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47295 * 89.99886 * 25 23 21 27 27 H 1.48505 * 109.47042 * 209.99920 * 25 23 21 28 28 H 1.48503 * 109.47059 * 329.99598 * 25 23 21 29 29 C 1.46693 * 120.97046 * 179.44894 * 11 9 8 30 30 C 1.38217 * 119.99582 * 180.27323 * 2 1 3 31 31 H 1.09001 * 109.46766 * 89.99739 * 1 2 3 32 32 H 1.08999 * 109.47386 * 210.00278 * 1 2 3 33 33 H 1.09001 * 109.46661 * 330.00028 * 1 2 3 34 34 H 1.08002 * 119.99955 * 0.02562 * 3 2 1 35 35 H 1.07995 * 119.99639 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.46887 * 270.01946 * 6 5 4 37 37 H 1.08998 * 109.46989 * 30.02391 * 6 5 4 38 38 H 1.09004 * 109.46802 * 150.02360 * 6 5 4 39 39 H 1.09009 * 109.46601 * 324.99722 * 8 7 5 40 40 H 1.08998 * 109.47035 * 205.00230 * 8 7 5 41 41 H 1.08996 * 109.36254 * 353.97701 * 12 11 9 42 42 H 1.08994 * 109.35988 * 113.57266 * 12 11 9 43 43 H 1.09003 * 108.36106 * 79.85313 * 13 12 11 44 44 H 1.09005 * 108.36265 * 197.12892 * 13 12 11 45 45 H 1.09001 * 111.09621 * 279.89524 * 18 16 14 46 46 H 1.09001 * 111.13118 * 155.81755 * 18 16 14 47 47 H 1.08993 * 110.35374 * 204.08330 * 19 18 16 48 48 H 1.09008 * 110.44317 * 81.84237 * 19 18 16 49 49 H 0.97005 * 120.00021 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.52411 * 241.06195 * 29 11 9 51 51 H 1.08993 * 109.53072 * 1.28088 * 29 11 9 52 52 H 1.07998 * 120.00477 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7788 -0.0002 -0.0028 7 6 3.5807 -1.1971 -0.0016 8 6 4.3341 -2.5022 -0.0034 9 6 4.6942 -2.8763 1.4114 10 8 4.3704 -2.1544 2.3306 11 7 5.3804 -4.0105 1.6546 12 6 5.7818 -4.8984 0.5604 13 6 5.2973 -6.3115 0.8296 14 6 5.4498 -6.7751 2.2428 15 1 4.7144 -7.5682 2.3783 16 6 5.1399 -5.7611 3.3414 17 1 4.0724 -5.7017 3.5536 18 6 5.9488 -6.3402 4.5446 19 6 7.2242 -6.8536 3.8269 20 7 6.7447 -7.3888 2.5355 21 6 7.3983 -8.3007 1.7505 22 1 6.9570 -8.6271 0.8204 23 6 8.6280 -8.8056 2.1501 24 7 9.1656 -8.4082 3.2839 25 14 9.5199 -10.0491 1.0789 26 1 10.4033 -9.3351 0.1223 27 1 10.3388 -10.9437 1.9359 28 1 8.5266 -10.8572 0.3268 29 6 5.7525 -4.3891 3.0221 30 6 2.1980 -1.1970 -0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6584 2.1326 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 6.1413 0.0006 -1.0307 37 1 6.1425 0.8893 0.5115 38 1 6.1424 -0.8907 0.5100 39 1 5.2441 -2.3956 -0.5939 40 1 3.7086 -3.2822 -0.4375 41 1 5.3488 -4.5398 -0.3734 42 1 6.8685 -4.8990 0.4757 43 1 4.2426 -6.3698 0.5609 44 1 5.8524 -6.9934 0.1854 45 1 5.4104 -7.1591 5.0215 46 1 6.1917 -5.5604 5.2664 47 1 7.6969 -7.6424 4.4120 48 1 7.9238 -6.0343 3.6612 49 1 10.0247 -8.7613 3.5634 50 1 6.8382 -4.4443 3.1022 51 1 5.3717 -3.6459 3.7224 52 1 1.6581 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036807896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:12 Heat of formation + Delta-G solvation = 9.467619 kcal Electronic energy + Delta-G solvation = -30676.822379 eV Core-core repulsion = 26834.268109 eV Total energy + Delta-G solvation = -3842.554271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.47835 -39.48550 -38.08391 -35.15490 -34.31414 -32.91924 -32.33640 -31.77762 -29.52688 -29.40093 -28.36173 -27.30701 -25.19321 -24.83638 -23.92096 -22.59724 -22.24862 -20.64340 -20.12687 -19.30823 -18.07519 -17.02906 -16.44706 -16.16129 -16.02989 -15.69528 -15.16626 -14.89008 -14.64959 -14.43148 -14.06523 -13.95277 -13.66130 -13.38241 -13.33457 -13.06246 -12.95163 -12.82932 -12.68041 -12.48094 -12.14997 -12.05841 -11.93615 -11.73383 -11.58430 -11.44220 -11.21529 -11.03802 -11.03676 -10.92866 -10.79088 -10.54808 -10.18476 -10.10702 -9.93673 -9.67189 -9.63208 -9.52324 -8.80646 -8.66235 -8.43459 -8.23365 -6.84007 -5.70768 -3.09802 1.26324 1.33812 2.80927 3.22519 3.36028 3.41369 3.43460 3.69806 4.44252 4.53637 4.65788 4.77330 4.77767 4.91105 5.07381 5.10716 5.13282 5.25805 5.27611 5.31050 5.39389 5.42773 5.44837 5.45713 5.50820 5.53781 5.54789 5.63109 5.64756 5.72619 5.82724 5.83687 5.93231 6.03077 6.12076 6.14292 6.22126 6.29931 6.31737 6.36858 6.41852 6.50468 6.58840 6.59586 6.67209 6.74435 6.92457 6.96469 6.97946 7.48265 7.59539 7.70280 7.82679 8.30579 8.38600 9.17336 9.79886 10.46733 11.35211 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002524 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.165548 B =11090.030819 C =11321.365380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.057 4.057 8 C -0.104 4.104 9 C 0.516 3.484 10 O -0.541 6.541 11 N -0.604 5.604 12 C 0.115 3.885 13 C -0.136 4.136 14 C 0.173 3.827 15 H 0.008 0.992 16 C -0.106 4.106 17 H 0.075 0.925 18 C -0.143 4.143 19 C 0.157 3.843 20 N -0.593 5.593 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.121 3.879 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.014 0.986 49 H 0.252 0.748 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 15.742 -7.595 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.173 4.173 7 C -0.058 4.058 8 C -0.144 4.144 9 C 0.304 3.696 10 O -0.418 6.418 11 N -0.336 5.336 12 C -0.007 4.007 13 C -0.176 4.176 14 C 0.065 3.935 15 H 0.025 0.975 16 C -0.126 4.126 17 H 0.094 0.906 18 C -0.182 4.182 19 C 0.032 3.968 20 N -0.318 5.318 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.001 4.001 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.032 0.968 49 H 0.063 0.937 50 H 0.095 0.905 51 H 0.102 0.898 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.249 15.965 -7.103 21.339 hybrid contribution 0.559 -0.794 -0.630 1.158 sum -11.690 15.171 -7.733 20.654 Atomic orbital electron populations 1.20761 0.91363 1.02702 1.02033 1.19814 0.95898 0.93097 1.00613 1.20947 0.94134 0.97312 1.01407 1.20935 0.94133 0.97259 1.01205 1.19678 0.95899 0.92556 0.99209 1.20820 0.91414 1.03141 1.01920 1.19153 0.93308 0.93236 1.00075 1.20730 1.01884 0.96085 0.95678 1.20359 0.77762 0.80683 0.90824 1.90690 1.54057 1.50962 1.46137 1.48007 1.54940 1.21886 1.08794 1.21326 1.00674 0.90278 0.88463 1.21237 1.00208 0.95729 1.00391 1.19412 0.90052 0.93044 0.91019 0.97487 1.22406 0.98759 0.94303 0.97145 0.90635 1.23290 0.99396 0.99401 0.96141 1.21909 0.90522 0.97673 0.86687 1.44486 1.19010 1.46936 1.21373 1.18960 0.99914 1.14751 1.01325 0.90481 1.24762 0.97518 1.00503 0.97709 1.69845 1.18521 1.46664 1.21777 0.86128 0.79604 0.80807 0.79276 1.21688 1.21706 1.20736 1.21760 1.00244 0.95820 0.82233 1.20838 0.93258 0.97594 1.00484 0.91399 0.91613 0.91719 0.86381 0.86236 0.91201 0.91512 0.91520 0.87985 0.88158 0.90760 0.91027 0.93174 0.89897 0.91976 0.92068 0.88411 0.96785 0.93735 0.90504 0.89839 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.07 -0.89 5.88 -104.62 -0.62 -1.50 16 6 C -0.12 -1.23 9.22 36.01 0.33 -0.90 16 7 C -0.06 -0.72 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.21 3.51 -29.03 -0.10 -1.32 16 9 C 0.52 7.87 6.92 -10.98 -0.08 7.79 16 10 O -0.54 -10.07 15.46 5.55 0.09 -9.98 16 11 N -0.60 -9.40 2.94 -173.88 -0.51 -9.91 16 12 C 0.12 1.67 6.38 -4.65 -0.03 1.64 16 13 C -0.14 -2.25 5.62 -29.07 -0.16 -2.41 16 14 C 0.17 3.40 2.63 -69.95 -0.18 3.21 16 15 H 0.01 0.16 8.06 -51.93 -0.42 -0.26 16 16 C -0.11 -1.88 3.70 -88.80 -0.33 -2.21 16 17 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.14 -2.67 6.46 -23.96 -0.15 -2.83 16 19 C 0.16 3.65 5.35 -2.23 -0.01 3.63 16 20 N -0.59 -14.17 3.32 -165.69 -0.55 -14.72 16 21 C -0.22 -5.78 9.59 -15.06 -0.14 -5.92 16 22 H 0.08 1.93 7.02 -52.49 -0.37 1.57 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -26.01 10.18 55.49 0.56 -25.44 16 25 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 C 0.12 2.08 5.57 -3.62 -0.02 2.06 16 30 C -0.10 -1.23 9.34 -39.58 -0.37 -1.60 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 39 H 0.10 1.02 6.79 -51.92 -0.35 0.67 16 40 H 0.10 0.99 7.62 -51.93 -0.40 0.59 16 41 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.48 6.62 -51.93 -0.34 1.14 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 47 H 0.10 2.59 6.09 -51.93 -0.32 2.28 16 48 H 0.01 0.35 7.10 -51.92 -0.37 -0.02 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.08 1.43 6.50 -51.93 -0.34 1.09 16 51 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -31.09 396.59 -11.41 -42.50 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.51 Total: 2.60 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.44 Total: -7.34 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.50 Total: -50.07 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.09 -11.41 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036807896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.967 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds