Wall clock time and date at job start Wed Apr 1 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.99556 * 2 1 4 4 C 1.38208 * 119.99503 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00508 * 359.74477 * 4 3 2 6 6 C 1.50697 * 120.00398 * 180.27569 * 5 4 3 7 7 C 1.38221 * 119.99590 * 0.50789 * 5 4 3 8 8 C 1.50703 * 120.00092 * 179.76416 * 7 5 4 9 9 C 1.50704 * 109.46802 * 84.72433 * 8 7 5 10 10 O 1.21276 * 120.00018 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99661 * 179.97438 * 9 8 7 12 12 C 1.46597 * 119.68599 * 359.97438 * 11 9 8 13 13 C 1.53957 * 110.57535 * 132.17153 * 12 11 9 14 14 C 1.51512 * 107.34604 * 51.05660 * 13 12 11 15 15 H 1.09001 * 109.28370 * 53.01679 * 14 13 12 16 16 C 1.55403 * 107.90557 * 295.19108 * 14 13 12 17 17 H 1.09000 * 111.42550 * 309.47789 * 16 14 13 18 18 C 1.53473 * 100.32848 * 190.98150 * 16 14 13 19 19 C 1.55292 * 101.87777 * 38.99665 * 18 16 14 20 20 N 1.45472 * 117.35486 * 178.09090 * 14 13 12 21 21 C 1.36939 * 126.39973 * 329.35304 * 20 14 13 22 22 H 1.08000 * 119.99970 * 7.59096 * 21 20 14 23 23 C 1.38808 * 119.99673 * 187.58364 * 21 20 14 24 24 N 1.31619 * 120.00156 * 8.09879 * 23 21 20 25 25 Si 1.86800 * 119.99735 * 188.10134 * 23 21 20 26 26 H 1.48499 * 109.47302 * 94.80586 * 25 23 21 27 27 H 1.48504 * 109.47176 * 214.80026 * 25 23 21 28 28 H 1.48502 * 109.47433 * 334.79917 * 25 23 21 29 29 C 1.47726 * 119.68238 * 180.02562 * 11 9 8 30 30 C 1.38212 * 119.99893 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46916 * 270.01650 * 1 2 3 32 32 H 1.08993 * 109.47236 * 30.01963 * 1 2 3 33 33 H 1.09001 * 109.47203 * 150.02276 * 1 2 3 34 34 H 1.07995 * 120.00051 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.00147 * 180.02562 * 4 3 2 36 36 H 1.08993 * 109.47347 * 270.22816 * 6 5 4 37 37 H 1.08999 * 109.47191 * 30.23776 * 6 5 4 38 38 H 1.09006 * 109.46860 * 150.23336 * 6 5 4 39 39 H 1.09006 * 109.46964 * 324.73341 * 8 7 5 40 40 H 1.08996 * 109.47483 * 204.72955 * 8 7 5 41 41 H 1.09005 * 109.25268 * 252.44948 * 12 11 9 42 42 H 1.08995 * 109.25415 * 11.92769 * 12 11 9 43 43 H 1.08996 * 109.88126 * 170.51592 * 13 12 11 44 44 H 1.08996 * 109.87829 * 291.59245 * 13 12 11 45 45 H 1.09003 * 110.88549 * 280.87132 * 18 16 14 46 46 H 1.09003 * 111.02070 * 157.18222 * 18 16 14 47 47 H 1.09009 * 109.91777 * 218.23017 * 19 18 16 48 48 H 1.08997 * 110.08578 * 97.02788 * 19 18 16 49 49 H 0.97002 * 119.99946 * 180.02562 * 24 23 21 50 50 H 1.08995 * 110.06569 * 351.27083 * 29 11 9 51 51 H 1.08993 * 110.06939 * 112.74560 * 29 11 9 52 52 H 1.07993 * 120.00548 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0002 0.0064 6 6 5.7787 0.0002 0.0133 7 6 3.5807 -1.1969 0.0011 8 6 4.3342 -2.5020 0.0021 9 6 4.6921 -2.8742 1.4180 10 8 4.3669 -2.1512 2.3357 11 7 5.3727 -4.0111 1.6642 12 6 5.7609 -4.8808 0.5498 13 6 7.2424 -5.2826 0.6676 14 6 7.4555 -5.8167 2.0693 15 1 6.7246 -6.5999 2.2710 16 6 7.2164 -4.6495 3.0670 17 1 7.7860 -3.7633 2.7869 18 6 7.7452 -5.2814 4.3617 19 6 8.9871 -6.0622 3.8522 20 7 8.7849 -6.3029 2.4045 21 6 9.6816 -6.8764 1.5429 22 1 9.4772 -6.8924 0.4825 23 6 10.8533 -7.4370 2.0324 24 7 11.0311 -7.5615 3.3306 25 14 12.1779 -8.0146 0.8487 26 1 13.1832 -6.9369 0.6665 27 1 12.8421 -9.2228 1.4003 28 1 11.5616 -8.3435 -0.4618 29 6 5.7194 -4.3695 3.0548 30 6 2.1981 -1.1970 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6582 2.1327 -0.0004 35 1 4.1204 2.1327 0.0010 36 1 6.1467 0.0020 -1.0126 37 1 6.1396 0.8892 0.5304 38 1 6.1397 -0.8908 0.5272 39 1 5.2452 -2.3960 -0.5870 40 1 3.7095 -3.2826 -0.4320 41 1 5.1428 -5.7786 0.5624 42 1 5.6063 -4.3511 -0.3902 43 1 7.4758 -6.0565 -0.0635 44 1 7.8768 -4.4118 0.5023 45 1 7.0083 -5.9593 4.7925 46 1 8.0346 -4.5151 5.0810 47 1 9.0697 -7.0130 4.3789 48 1 9.8902 -5.4720 4.0080 49 1 11.8500 -7.9529 3.6727 50 1 5.4884 -3.5402 3.7234 51 1 5.1696 -5.2598 3.3598 52 1 1.6582 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036807897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:16 Heat of formation + Delta-G solvation = 7.121999 kcal Electronic energy + Delta-G solvation = -30412.110829 eV Core-core repulsion = 26569.454845 eV Total energy + Delta-G solvation = -3842.655984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -40.57044 -39.52250 -38.12554 -35.36423 -34.35660 -32.88691 -32.34995 -31.56199 -29.85492 -29.42583 -28.53371 -27.39889 -24.99248 -24.82810 -23.48885 -22.44670 -22.20155 -20.67237 -20.08143 -19.63192 -18.70207 -17.19622 -16.31712 -16.26905 -16.02480 -15.64173 -15.16106 -14.91938 -14.75775 -14.40870 -14.09996 -13.89360 -13.66637 -13.38165 -13.32480 -13.28867 -12.91787 -12.85564 -12.75605 -12.54844 -12.42559 -12.09935 -12.03059 -11.73817 -11.61777 -11.50965 -11.34721 -11.07326 -11.03551 -10.87441 -10.80978 -10.72387 -10.18489 -10.11585 -9.95125 -9.69073 -9.63765 -9.45447 -8.84923 -8.65152 -8.48707 -8.46562 -6.84032 -5.74460 -3.08353 1.22554 1.30287 2.70797 3.07207 3.37579 3.42599 3.45034 3.64157 4.46377 4.48072 4.60559 4.67261 4.74500 4.87860 4.96413 5.04265 5.07949 5.09525 5.22888 5.26844 5.32665 5.36116 5.39758 5.42298 5.51680 5.52865 5.55545 5.60067 5.60482 5.61903 5.79040 5.81242 5.88336 5.99343 6.02210 6.12029 6.13689 6.16594 6.21702 6.33025 6.34892 6.46200 6.48713 6.56237 6.58586 6.61970 6.82600 6.93016 7.04632 7.46486 7.50765 7.63287 7.77231 8.22073 8.27120 9.15881 9.80566 10.49330 11.37983 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002390 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.226833 B =11714.095071 C =12100.180723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.105 4.105 9 C 0.514 3.486 10 O -0.537 6.537 11 N -0.608 5.608 12 C 0.110 3.890 13 C -0.129 4.129 14 C 0.167 3.833 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.078 0.922 18 C -0.134 4.134 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.127 3.873 30 C -0.104 4.104 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.036 0.964 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.810 13.438 -7.737 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.174 4.174 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.302 3.698 10 O -0.414 6.414 11 N -0.342 5.342 12 C -0.014 4.014 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.036 0.964 16 C -0.144 4.144 17 H 0.096 0.904 18 C -0.173 4.173 19 C 0.050 3.950 20 N -0.317 5.317 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.005 3.995 30 C -0.122 4.122 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.085 0.915 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.755 13.659 -7.234 23.540 hybrid contribution 0.907 -0.449 -0.579 1.165 sum -16.849 13.210 -7.813 22.791 Atomic orbital electron populations 1.20760 0.91362 1.02478 1.02246 1.19813 0.95890 0.93107 1.00683 1.20953 0.94138 0.97328 1.01288 1.20949 0.94137 0.97315 1.01128 1.19693 0.95944 0.92546 0.98982 1.20827 0.91316 1.03230 1.02002 1.19149 0.93299 0.93225 1.00324 1.20759 1.01919 0.96195 0.95585 1.20452 0.77907 0.80582 0.90906 1.90697 1.53835 1.50637 1.46276 1.48336 1.55359 1.22340 1.08155 1.21823 0.96951 0.94126 0.88475 1.21876 0.93673 1.01513 0.99799 1.20621 0.89273 0.92448 0.91800 0.96371 1.22597 0.93943 0.99429 0.98458 0.90389 1.22626 0.99767 0.99163 0.95735 1.21525 0.92143 0.97467 0.83860 1.44177 1.11987 1.69852 1.05726 1.18981 0.97813 1.29890 0.88884 0.90430 1.24806 0.98902 1.00717 0.95985 1.69951 1.26477 1.49498 1.10557 0.86155 0.82128 0.77918 0.79882 1.21709 1.21797 1.20623 1.21602 0.95274 1.00868 0.81766 1.20816 0.93223 0.97557 1.00584 0.91306 0.91747 0.91694 0.86357 0.86192 0.91138 0.91452 0.91491 0.87802 0.88175 0.91573 0.90260 0.90436 0.91433 0.92182 0.92114 0.92725 0.94601 0.93756 0.89331 0.91452 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 5 C -0.07 -0.84 5.88 -104.62 -0.62 -1.46 16 6 C -0.12 -1.24 9.22 36.00 0.33 -0.91 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.13 3.48 -29.03 -0.10 -1.23 16 9 C 0.51 7.26 6.87 -10.99 -0.08 7.18 16 10 O -0.54 -9.50 15.39 5.56 0.09 -9.41 16 11 N -0.61 -8.46 3.00 -172.45 -0.52 -8.98 16 12 C 0.11 1.34 6.21 -3.49 -0.02 1.32 16 13 C -0.13 -2.06 5.45 -26.98 -0.15 -2.21 16 14 C 0.17 3.24 2.58 -67.96 -0.18 3.06 16 15 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 16 C -0.12 -2.17 2.85 -89.46 -0.26 -2.42 16 17 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 18 C -0.13 -2.47 6.53 -25.27 -0.17 -2.63 16 19 C 0.17 4.15 5.47 -1.92 -0.01 4.14 16 20 N -0.59 -14.52 3.35 -163.07 -0.55 -15.06 16 21 C -0.23 -6.08 9.89 -15.06 -0.15 -6.23 16 22 H 0.08 1.98 7.18 -52.49 -0.38 1.60 16 23 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 24 N -0.92 -26.65 10.65 55.49 0.59 -26.05 16 25 Si 0.91 21.69 29.56 -169.99 -5.03 16.66 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.13 1.93 5.96 -3.73 -0.02 1.91 16 30 C -0.10 -1.16 9.34 -39.58 -0.37 -1.53 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.07 0.80 6.15 -51.93 -0.32 0.48 16 39 H 0.10 0.97 6.41 -51.93 -0.33 0.64 16 40 H 0.10 0.85 7.90 -51.93 -0.41 0.44 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.75 5.84 -51.93 -0.30 0.45 16 43 H 0.08 1.25 7.64 -51.93 -0.40 0.86 16 44 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 45 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 1.44 7.24 -51.92 -0.38 1.07 16 48 H 0.04 0.94 7.85 -51.93 -0.41 0.53 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 51 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 52 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -32.32 400.94 -11.45 -43.77 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.73 Total: 0.82 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.35 Total: -7.78 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.47 Total: -50.10 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.32 -11.45 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036807897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.891 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds