Wall clock time and date at job start Wed Apr 1 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.99556 * 2 1 4 4 C 1.38208 * 119.99503 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00508 * 359.74477 * 4 3 2 6 6 C 1.50697 * 120.00398 * 180.27569 * 5 4 3 7 7 C 1.38221 * 119.99590 * 0.50789 * 5 4 3 8 8 C 1.50703 * 120.00092 * 179.76416 * 7 5 4 9 9 C 1.50704 * 109.46802 * 84.72433 * 8 7 5 10 10 O 1.21276 * 120.00018 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99661 * 179.97438 * 9 8 7 12 12 C 1.46597 * 119.68599 * 359.97438 * 11 9 8 13 13 C 1.53957 * 110.57535 * 132.17153 * 12 11 9 14 14 C 1.51512 * 107.34604 * 51.05660 * 13 12 11 15 15 H 1.09001 * 109.28370 * 53.01679 * 14 13 12 16 16 C 1.55403 * 107.90557 * 295.19108 * 14 13 12 17 17 H 1.09000 * 111.42550 * 309.47789 * 16 14 13 18 18 C 1.53473 * 100.32848 * 190.98150 * 16 14 13 19 19 C 1.55292 * 101.87777 * 38.99665 * 18 16 14 20 20 N 1.45472 * 117.35486 * 178.09090 * 14 13 12 21 21 C 1.36939 * 126.39973 * 329.35304 * 20 14 13 22 22 H 1.08000 * 119.99970 * 7.59096 * 21 20 14 23 23 C 1.38808 * 119.99673 * 187.58364 * 21 20 14 24 24 N 1.31619 * 120.00156 * 8.09879 * 23 21 20 25 25 Si 1.86800 * 119.99735 * 188.10134 * 23 21 20 26 26 H 1.48499 * 109.47302 * 94.80586 * 25 23 21 27 27 H 1.48504 * 109.47176 * 214.80026 * 25 23 21 28 28 H 1.48502 * 109.47433 * 334.79917 * 25 23 21 29 29 C 1.47726 * 119.68238 * 180.02562 * 11 9 8 30 30 C 1.38212 * 119.99893 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46916 * 270.01650 * 1 2 3 32 32 H 1.08993 * 109.47236 * 30.01963 * 1 2 3 33 33 H 1.09001 * 109.47203 * 150.02276 * 1 2 3 34 34 H 1.07995 * 120.00051 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.00147 * 180.02562 * 4 3 2 36 36 H 1.08993 * 109.47347 * 270.22816 * 6 5 4 37 37 H 1.08999 * 109.47191 * 30.23776 * 6 5 4 38 38 H 1.09006 * 109.46860 * 150.23336 * 6 5 4 39 39 H 1.09006 * 109.46964 * 324.73341 * 8 7 5 40 40 H 1.08996 * 109.47483 * 204.72955 * 8 7 5 41 41 H 1.09005 * 109.25268 * 252.44948 * 12 11 9 42 42 H 1.08995 * 109.25415 * 11.92769 * 12 11 9 43 43 H 1.08996 * 109.88126 * 170.51592 * 13 12 11 44 44 H 1.08996 * 109.87829 * 291.59245 * 13 12 11 45 45 H 1.09003 * 110.88549 * 280.87132 * 18 16 14 46 46 H 1.09003 * 111.02070 * 157.18222 * 18 16 14 47 47 H 1.09009 * 109.91777 * 218.23017 * 19 18 16 48 48 H 1.08997 * 110.08578 * 97.02788 * 19 18 16 49 49 H 0.97002 * 119.99946 * 180.02562 * 24 23 21 50 50 H 1.08995 * 110.06569 * 351.27083 * 29 11 9 51 51 H 1.08993 * 110.06939 * 112.74560 * 29 11 9 52 52 H 1.07993 * 120.00548 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0002 0.0064 6 6 5.7787 0.0002 0.0133 7 6 3.5807 -1.1969 0.0011 8 6 4.3342 -2.5020 0.0021 9 6 4.6921 -2.8742 1.4180 10 8 4.3669 -2.1512 2.3357 11 7 5.3727 -4.0111 1.6642 12 6 5.7609 -4.8808 0.5498 13 6 7.2424 -5.2826 0.6676 14 6 7.4555 -5.8167 2.0693 15 1 6.7246 -6.5999 2.2710 16 6 7.2164 -4.6495 3.0670 17 1 7.7860 -3.7633 2.7869 18 6 7.7452 -5.2814 4.3617 19 6 8.9871 -6.0622 3.8522 20 7 8.7849 -6.3029 2.4045 21 6 9.6816 -6.8764 1.5429 22 1 9.4772 -6.8924 0.4825 23 6 10.8533 -7.4370 2.0324 24 7 11.0311 -7.5615 3.3306 25 14 12.1779 -8.0146 0.8487 26 1 13.1832 -6.9369 0.6665 27 1 12.8421 -9.2228 1.4003 28 1 11.5616 -8.3435 -0.4618 29 6 5.7194 -4.3695 3.0548 30 6 2.1981 -1.1970 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6582 2.1327 -0.0004 35 1 4.1204 2.1327 0.0010 36 1 6.1467 0.0020 -1.0126 37 1 6.1396 0.8892 0.5304 38 1 6.1397 -0.8908 0.5272 39 1 5.2452 -2.3960 -0.5870 40 1 3.7095 -3.2826 -0.4320 41 1 5.1428 -5.7786 0.5624 42 1 5.6063 -4.3511 -0.3902 43 1 7.4758 -6.0565 -0.0635 44 1 7.8768 -4.4118 0.5023 45 1 7.0083 -5.9593 4.7925 46 1 8.0346 -4.5151 5.0810 47 1 9.0697 -7.0130 4.3789 48 1 9.8902 -5.4720 4.0080 49 1 11.8500 -7.9529 3.6727 50 1 5.4884 -3.5402 3.7234 51 1 5.1696 -5.2598 3.3598 52 1 1.6582 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036807897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:15 Heat of formation + Delta-G solvation = -9.412221 kcal Electronic energy + Delta-G solvation = -30412.827807 eV Core-core repulsion = 26569.454845 eV Total energy + Delta-G solvation = -3843.372962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.65622 -40.53805 -39.42751 -36.76880 -35.14078 -34.54782 -33.32809 -32.97667 -31.42290 -30.12436 -29.96540 -28.47915 -26.66512 -25.65599 -24.88062 -23.75204 -23.06942 -21.92107 -21.58490 -20.93616 -19.81018 -18.65249 -17.83763 -17.16155 -17.00299 -16.87648 -16.53459 -16.13242 -15.93387 -15.60721 -15.55745 -15.13893 -14.77123 -14.68129 -14.22183 -14.17711 -14.06050 -13.85492 -13.81205 -13.61774 -13.53120 -13.40748 -13.10840 -13.01889 -12.87491 -12.72762 -12.67535 -12.47827 -12.33482 -12.09463 -11.99364 -11.83454 -11.80053 -11.72991 -11.63200 -11.47756 -11.00185 -10.80864 -10.69618 -9.66312 -9.64119 -9.23308 -8.85177 -7.83245 -5.18353 0.43862 0.52389 1.46508 1.48159 1.56659 1.64730 2.01179 2.51239 2.84136 3.35040 3.44801 3.67482 3.72187 3.86868 3.89850 3.94695 4.01569 4.05637 4.15112 4.22243 4.25255 4.32989 4.36982 4.42183 4.50512 4.53763 4.62519 4.66335 4.72600 4.73463 4.77686 4.83828 4.84026 4.85797 4.88143 4.92150 4.93489 5.05255 5.07477 5.13801 5.23680 5.26836 5.39408 5.46391 5.55378 5.56175 5.58188 5.65040 5.73013 5.75913 5.76992 6.18355 6.21414 6.43626 7.08963 7.19525 7.80199 8.49899 9.28791 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002390 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.226833 B =11714.095071 C =12100.180723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.577 6.577 11 N -0.610 5.610 12 C 0.116 3.884 13 C -0.123 4.123 14 C 0.157 3.843 15 H 0.019 0.981 16 C -0.108 4.108 17 H 0.062 0.938 18 C -0.121 4.121 19 C 0.179 3.821 20 N -0.614 5.614 21 C -0.228 4.228 22 H 0.089 0.911 23 C -0.072 4.072 24 N -0.953 5.953 25 Si 0.973 3.027 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.262 1.262 29 C 0.135 3.865 30 C -0.118 4.118 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.019 0.981 48 H -0.001 1.001 49 H 0.244 0.756 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 14.190 -10.034 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.092 4.092 6 C -0.170 4.170 7 C -0.078 4.078 8 C -0.138 4.138 9 C 0.305 3.695 10 O -0.456 6.456 11 N -0.342 5.342 12 C -0.006 4.006 13 C -0.163 4.163 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.128 4.128 17 H 0.081 0.919 18 C -0.160 4.160 19 C 0.054 3.946 20 N -0.338 5.338 21 C -0.357 4.357 22 H 0.107 0.893 23 C -0.264 4.264 24 N -0.602 5.602 25 Si 0.802 3.198 26 H -0.220 1.220 27 H -0.226 1.226 28 H -0.186 1.186 29 C 0.013 3.987 30 C -0.136 4.136 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.037 0.963 48 H 0.017 0.983 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.097 14.417 -9.574 26.522 hybrid contribution 1.579 -0.637 0.159 1.710 sum -18.518 13.780 -9.415 24.929 Atomic orbital electron populations 1.20797 0.89546 1.03671 1.02647 1.20198 0.97407 0.92980 0.99934 1.21279 0.94170 0.98324 1.00739 1.21227 0.94751 0.97742 1.01036 1.19944 0.96486 0.93136 0.99681 1.20803 0.90975 1.02428 1.02816 1.19356 0.93829 0.93659 1.00911 1.20801 1.03065 0.96642 0.93290 1.21018 0.76922 0.79670 0.91938 1.90682 1.55408 1.51708 1.47845 1.48389 1.55259 1.22709 1.07868 1.21918 0.94196 0.95156 0.89357 1.21809 0.96401 1.00842 0.97202 1.20877 0.86588 0.92843 0.94714 0.96390 1.22418 0.95591 0.97885 0.96944 0.91929 1.22502 0.97625 0.99223 0.96604 1.21298 0.93311 0.95850 0.84110 1.44474 1.13716 1.69833 1.05776 1.19419 0.98042 1.28460 0.89819 0.89304 1.25652 1.01322 1.01988 0.97474 1.70170 1.26583 1.51121 1.12370 0.85125 0.79284 0.76760 0.78618 1.21953 1.22622 1.18627 1.21414 0.93186 1.01147 0.83001 1.21091 0.93295 0.98503 1.00723 0.91175 0.90394 0.90751 0.84378 0.84833 0.89480 0.91364 0.93118 0.86220 0.85337 0.89754 0.86583 0.90442 0.92466 0.90451 0.90569 0.96286 0.98299 0.94643 0.89953 0.90206 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.68 16 2 C -0.11 -1.97 5.88 -19.86 -0.12 -2.08 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 4 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 5 C -0.09 -2.05 5.88 -19.87 -0.12 -2.16 16 6 C -0.11 -2.27 9.22 71.24 0.66 -1.61 16 7 C -0.08 -1.68 4.37 -19.86 -0.09 -1.77 16 8 C -0.10 -1.82 3.48 29.10 0.10 -1.72 16 9 C 0.51 13.38 6.87 87.66 0.60 13.99 16 10 O -0.58 -19.74 15.39 -3.02 -0.05 -19.78 16 11 N -0.61 -15.38 3.00 -817.91 -2.45 -17.83 16 12 C 0.12 2.43 6.21 86.68 0.54 2.96 16 13 C -0.12 -3.68 5.45 30.43 0.17 -3.52 16 14 C 0.16 5.94 2.58 45.52 0.12 6.06 16 15 H 0.02 0.72 7.90 -2.39 -0.02 0.70 16 16 C -0.11 -3.70 2.85 -10.04 -0.03 -3.73 16 17 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 18 C -0.12 -4.45 6.53 31.54 0.21 -4.24 16 19 C 0.18 8.89 5.47 86.85 0.47 9.36 16 20 N -0.61 -30.53 3.35 -669.84 -2.24 -32.78 16 21 C -0.23 -12.32 9.89 84.03 0.83 -11.49 16 22 H 0.09 4.47 7.18 -2.91 -0.02 4.45 16 23 C -0.07 -4.04 5.45 84.86 0.46 -3.58 16 24 N -0.95 -57.70 10.65 21.65 0.23 -57.47 16 25 Si 0.97 45.26 29.56 68.60 2.03 47.29 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 29 C 0.14 3.87 5.96 85.91 0.51 4.38 16 30 C -0.12 -2.40 9.34 22.27 0.21 -2.19 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 38 H 0.05 1.16 6.15 -2.38 -0.01 1.15 16 39 H 0.12 1.82 6.41 -2.38 -0.02 1.81 16 40 H 0.13 1.62 7.90 -2.39 -0.02 1.60 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.12 1.63 5.84 -2.39 -0.01 1.62 16 43 H 0.08 2.32 7.64 -2.39 -0.02 2.31 16 44 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 45 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 46 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.02 1.06 7.24 -2.38 -0.02 1.04 16 48 H 0.00 -0.07 7.85 -2.39 -0.02 -0.09 16 49 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.08 2.52 6.99 -2.39 -0.02 2.50 16 51 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 52 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -73.25 400.94 4.08 -69.17 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.89 Total: 17.95 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.67 Total: -6.55 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.47 Total: -108.08 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.25 4.08 -69.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036807897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.756 kcal (2) G-P(sol) polarization free energy of solvation -73.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds