Wall clock time and date at job start Wed Apr 1 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38234 * 120.00293 * 2 1 4 4 C 1.38230 * 120.00467 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00454 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99726 * 0.02562 * 4 3 2 7 7 C 1.38238 * 120.00317 * 0.02562 * 6 4 3 8 8 C 1.50694 * 120.00275 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46861 * 89.99923 * 8 7 6 10 10 O 1.21279 * 120.00172 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99967 * 180.02562 * 9 8 7 12 12 C 1.46602 * 119.68382 * 359.97438 * 11 9 8 13 13 C 1.54039 * 110.11622 * 131.78545 * 12 11 9 14 14 C 1.51512 * 107.31374 * 51.99263 * 13 12 11 15 15 H 1.09002 * 109.27992 * 52.53460 * 14 13 12 16 16 C 1.55366 * 107.27438 * 294.26990 * 14 13 12 17 17 H 1.08994 * 111.51331 * 309.08378 * 16 14 13 18 18 C 1.53749 * 100.21795 * 191.18324 * 16 14 13 19 19 C 1.55287 * 101.83965 * 39.09728 * 18 16 14 20 20 N 1.45466 * 117.35301 * 177.59844 * 14 13 12 21 21 C 1.36929 * 126.40677 * 328.69622 * 20 14 13 22 22 H 1.08001 * 119.99958 * 359.97438 * 21 20 14 23 23 C 1.38813 * 120.00042 * 179.97438 * 21 20 14 24 24 N 1.31616 * 120.00351 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46964 * 90.00313 * 25 23 21 27 27 H 1.48506 * 109.47160 * 210.00244 * 25 23 21 28 28 H 1.48498 * 109.47093 * 330.00191 * 25 23 21 29 29 C 1.47716 * 119.68469 * 180.02562 * 11 9 8 30 30 C 1.38237 * 119.99606 * 0.25260 * 7 6 4 31 31 H 1.09001 * 109.46980 * 89.99895 * 1 2 3 32 32 H 1.08995 * 109.47336 * 209.99803 * 1 2 3 33 33 H 1.09001 * 109.47015 * 330.00145 * 1 2 3 34 34 H 1.08011 * 119.99790 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.46892 * 270.02550 * 5 4 3 36 36 H 1.08998 * 109.46569 * 30.02097 * 5 4 3 37 37 H 1.08996 * 109.47428 * 150.02054 * 5 4 3 38 38 H 1.08005 * 119.99816 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47375 * 330.00365 * 8 7 6 40 40 H 1.08993 * 109.47328 * 209.99765 * 8 7 6 41 41 H 1.09006 * 109.25252 * 252.45950 * 12 11 9 42 42 H 1.08999 * 109.25292 * 11.92506 * 12 11 9 43 43 H 1.09002 * 110.86418 * 291.98880 * 13 12 11 44 44 H 1.08997 * 108.92577 * 170.90578 * 13 12 11 45 45 H 1.08997 * 110.96085 * 280.95675 * 18 16 14 46 46 H 1.09001 * 110.98446 * 157.24426 * 18 16 14 47 47 H 1.09001 * 109.92129 * 218.17020 * 19 18 16 48 48 H 1.08997 * 109.92504 * 96.86476 * 19 18 16 49 49 H 0.97000 * 120.00723 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.07123 * 112.84550 * 29 11 9 51 51 H 1.08999 * 110.06676 * 351.27035 * 29 11 9 52 52 H 1.07997 * 120.00158 * 179.72617 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0016 7 6 3.5805 -1.1972 -0.0027 8 6 4.3340 -2.5023 -0.0044 9 6 4.5857 -2.9388 1.4159 10 8 4.1924 -2.2571 2.3386 11 7 5.2487 -4.0864 1.6607 12 6 5.7216 -4.9049 0.5401 13 6 7.1949 -5.2990 0.7565 14 6 7.2997 -5.9106 2.1387 15 1 6.5599 -6.7050 2.2378 16 6 6.9841 -4.7878 3.1652 17 1 7.5795 -3.8946 2.9762 18 6 7.4146 -5.4808 4.4684 19 6 8.6934 -6.2385 4.0189 20 7 8.6014 -6.4128 2.5504 21 6 9.5617 -6.9472 1.7337 22 1 9.3841 -7.0264 0.6713 23 6 10.7635 -7.3873 2.2711 24 7 10.9798 -7.2914 3.5658 25 14 12.0733 -8.1171 1.1570 26 1 12.9707 -7.0368 0.6744 27 1 12.8666 -9.1178 1.9151 28 1 11.4240 -8.7769 -0.0041 29 6 5.4911 -4.5079 3.0555 30 6 2.1982 -1.1972 -0.0080 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1325 0.0004 35 1 4.5150 2.8168 -1.0289 36 1 3.7453 3.2619 0.5131 37 1 5.2868 2.3719 0.5120 38 1 5.3517 0.0000 -0.0024 39 1 5.2863 -2.3714 -0.5184 40 1 3.7447 -3.2613 -0.5188 41 1 5.1065 -5.8017 0.4654 42 1 5.6365 -4.3328 -0.3838 43 1 7.8444 -4.4263 0.6870 44 1 7.4785 -6.0341 0.0034 45 1 6.6491 -6.1769 4.8110 46 1 7.6470 -4.7484 5.2415 47 1 8.7386 -7.2124 4.5063 48 1 9.5787 -5.6538 4.2687 49 1 11.8195 -7.5992 3.9415 50 1 4.9236 -5.4118 3.2771 51 1 5.2086 -3.7098 3.7419 52 1 1.6581 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036809040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:40 Heat of formation + Delta-G solvation = 6.052383 kcal Electronic energy + Delta-G solvation = -30015.921890 eV Core-core repulsion = 26173.219523 eV Total energy + Delta-G solvation = -3842.702366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.19 seconds Orbital eigenvalues (eV) -40.46642 -39.52185 -38.14707 -35.35549 -33.71492 -33.65959 -32.65561 -31.54480 -29.96228 -28.71594 -27.83751 -27.00950 -26.83171 -24.88404 -23.46758 -22.38366 -21.25671 -20.87764 -20.07217 -19.67948 -18.72225 -17.17821 -16.46699 -16.27338 -16.10258 -15.71584 -15.13239 -14.93451 -14.44846 -14.35110 -14.15936 -13.91281 -13.67049 -13.41451 -13.35880 -13.16868 -13.06047 -12.81360 -12.72868 -12.66669 -12.42297 -12.34643 -11.85207 -11.67150 -11.60806 -11.48214 -11.40701 -11.12660 -11.10620 -10.84012 -10.82019 -10.73021 -10.16428 -10.09409 -9.90306 -9.67022 -9.64311 -9.45111 -8.68675 -8.64148 -8.63335 -8.48326 -6.85445 -5.73155 -3.06483 1.23808 1.28739 2.72283 3.08039 3.37896 3.42695 3.44952 3.64231 4.46633 4.47723 4.59695 4.63647 4.66317 4.97453 4.99942 5.08539 5.09821 5.12661 5.17397 5.26879 5.34506 5.35600 5.36860 5.41297 5.43131 5.45169 5.53988 5.56935 5.60623 5.65209 5.68520 5.79850 5.89297 6.00923 6.03165 6.06462 6.14897 6.17689 6.22709 6.35136 6.42301 6.43251 6.49915 6.53090 6.61309 6.63285 6.83727 6.92823 7.06004 7.51228 7.54039 7.60645 7.79558 8.22767 8.28187 9.17589 9.81333 10.49628 11.39355 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.002270 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.843451 B =12332.452738 C =12666.591244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.609 5.609 12 C 0.110 3.890 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.020 0.980 16 C -0.124 4.124 17 H 0.079 0.921 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.127 3.873 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.054 0.946 49 H 0.252 0.748 50 H 0.067 0.933 51 H 0.088 0.912 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.129 13.717 -8.486 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.143 4.143 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.342 5.342 12 C -0.013 4.013 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.038 0.962 16 C -0.144 4.144 17 H 0.097 0.903 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.006 3.994 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.097 13.937 -7.969 24.192 hybrid contribution 0.938 -0.599 -0.561 1.247 sum -17.159 13.338 -8.529 23.347 Atomic orbital electron populations 1.20769 0.91313 1.02748 1.02089 1.19817 0.95885 0.93045 0.99673 1.20846 0.93486 0.97371 1.02485 1.19833 0.93800 0.95171 0.99484 1.20780 1.00036 0.94055 1.02146 1.20844 0.99573 0.91443 1.00940 1.19265 0.93475 0.93601 0.99071 1.20745 1.02110 0.96014 0.95479 1.20478 0.77871 0.80522 0.91031 1.90696 1.51268 1.53507 1.46141 1.48353 1.55663 1.22485 1.07726 1.21879 0.96143 0.95042 0.88275 1.21917 0.93788 1.01464 0.99742 1.20638 0.89540 0.92306 0.91652 0.96244 1.22649 0.94107 0.99430 0.98233 0.90263 1.22719 1.00020 0.99016 0.95776 1.21534 0.92506 0.97458 0.83229 1.44207 1.13071 1.71217 1.03445 1.18983 0.93566 1.32836 0.90000 0.90395 1.24798 0.98038 1.01603 0.96041 1.69937 1.24793 1.52348 1.09776 0.86155 0.81845 0.78563 0.79403 1.21663 1.21711 1.20727 1.21598 0.95989 1.00212 0.81642 1.20802 0.93327 0.97512 1.01287 0.91325 0.91572 0.91667 0.86399 0.91278 0.91660 0.91464 0.86300 0.87869 0.88063 0.91496 0.90267 0.91201 0.90740 0.92364 0.92093 0.94374 0.92734 0.93747 0.91447 0.89328 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.27 9.36 -39.59 -0.37 -1.64 16 4 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 5 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 6 C -0.11 -1.29 9.36 -39.58 -0.37 -1.66 16 7 C -0.05 -0.64 4.37 -104.63 -0.46 -1.09 16 8 C -0.10 -1.11 4.16 -29.03 -0.12 -1.23 16 9 C 0.51 7.35 7.66 -10.98 -0.08 7.27 16 10 O -0.54 -9.68 15.39 5.56 0.09 -9.60 16 11 N -0.61 -8.57 2.99 -172.40 -0.52 -9.08 16 12 C 0.11 1.35 6.22 -3.44 -0.02 1.33 16 13 C -0.13 -2.10 5.46 -26.94 -0.15 -2.24 16 14 C 0.17 3.25 2.59 -67.98 -0.18 3.08 16 15 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 16 C -0.12 -2.19 2.85 -89.33 -0.25 -2.45 16 17 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 18 C -0.14 -2.54 6.54 -25.13 -0.16 -2.70 16 19 C 0.18 4.24 5.45 -1.91 -0.01 4.23 16 20 N -0.59 -14.63 3.35 -163.10 -0.55 -15.18 16 21 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 22 H 0.08 1.99 7.25 -52.49 -0.38 1.61 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -26.79 10.44 55.49 0.58 -26.21 16 25 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.13 1.96 5.96 -3.73 -0.02 1.94 16 30 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.10 0.94 7.49 -51.93 -0.39 0.56 16 40 H 0.10 0.85 7.93 -51.93 -0.41 0.44 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.75 5.83 -51.93 -0.30 0.45 16 43 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 44 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 45 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 48 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 51 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 52 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -32.53 405.37 -11.53 -44.06 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.89 Total: 0.59 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.32 Total: -7.40 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.48 Total: -50.47 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.53 -11.53 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.112 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.19 seconds