Wall clock time and date at job start Wed Apr 1 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38234 * 120.00293 * 2 1 4 4 C 1.38230 * 120.00467 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00454 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99726 * 0.02562 * 4 3 2 7 7 C 1.38238 * 120.00317 * 0.02562 * 6 4 3 8 8 C 1.50694 * 120.00275 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46861 * 89.99923 * 8 7 6 10 10 O 1.21279 * 120.00172 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99967 * 180.02562 * 9 8 7 12 12 C 1.46602 * 119.68382 * 359.97438 * 11 9 8 13 13 C 1.54039 * 110.11622 * 131.78545 * 12 11 9 14 14 C 1.51512 * 107.31374 * 51.99263 * 13 12 11 15 15 H 1.09002 * 109.27992 * 52.53460 * 14 13 12 16 16 C 1.55366 * 107.27438 * 294.26990 * 14 13 12 17 17 H 1.08994 * 111.51331 * 309.08378 * 16 14 13 18 18 C 1.53749 * 100.21795 * 191.18324 * 16 14 13 19 19 C 1.55287 * 101.83965 * 39.09728 * 18 16 14 20 20 N 1.45466 * 117.35301 * 177.59844 * 14 13 12 21 21 C 1.36929 * 126.40677 * 328.69622 * 20 14 13 22 22 H 1.08001 * 119.99958 * 359.97438 * 21 20 14 23 23 C 1.38813 * 120.00042 * 179.97438 * 21 20 14 24 24 N 1.31616 * 120.00351 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46964 * 90.00313 * 25 23 21 27 27 H 1.48506 * 109.47160 * 210.00244 * 25 23 21 28 28 H 1.48498 * 109.47093 * 330.00191 * 25 23 21 29 29 C 1.47716 * 119.68469 * 180.02562 * 11 9 8 30 30 C 1.38237 * 119.99606 * 0.25260 * 7 6 4 31 31 H 1.09001 * 109.46980 * 89.99895 * 1 2 3 32 32 H 1.08995 * 109.47336 * 209.99803 * 1 2 3 33 33 H 1.09001 * 109.47015 * 330.00145 * 1 2 3 34 34 H 1.08011 * 119.99790 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.46892 * 270.02550 * 5 4 3 36 36 H 1.08998 * 109.46569 * 30.02097 * 5 4 3 37 37 H 1.08996 * 109.47428 * 150.02054 * 5 4 3 38 38 H 1.08005 * 119.99816 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47375 * 330.00365 * 8 7 6 40 40 H 1.08993 * 109.47328 * 209.99765 * 8 7 6 41 41 H 1.09006 * 109.25252 * 252.45950 * 12 11 9 42 42 H 1.08999 * 109.25292 * 11.92506 * 12 11 9 43 43 H 1.09002 * 110.86418 * 291.98880 * 13 12 11 44 44 H 1.08997 * 108.92577 * 170.90578 * 13 12 11 45 45 H 1.08997 * 110.96085 * 280.95675 * 18 16 14 46 46 H 1.09001 * 110.98446 * 157.24426 * 18 16 14 47 47 H 1.09001 * 109.92129 * 218.17020 * 19 18 16 48 48 H 1.08997 * 109.92504 * 96.86476 * 19 18 16 49 49 H 0.97000 * 120.00723 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.07123 * 112.84550 * 29 11 9 51 51 H 1.08999 * 110.06676 * 351.27035 * 29 11 9 52 52 H 1.07997 * 120.00158 * 179.72617 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0016 7 6 3.5805 -1.1972 -0.0027 8 6 4.3340 -2.5023 -0.0044 9 6 4.5857 -2.9388 1.4159 10 8 4.1924 -2.2571 2.3386 11 7 5.2487 -4.0864 1.6607 12 6 5.7216 -4.9049 0.5401 13 6 7.1949 -5.2990 0.7565 14 6 7.2997 -5.9106 2.1387 15 1 6.5599 -6.7050 2.2378 16 6 6.9841 -4.7878 3.1652 17 1 7.5795 -3.8946 2.9762 18 6 7.4146 -5.4808 4.4684 19 6 8.6934 -6.2385 4.0189 20 7 8.6014 -6.4128 2.5504 21 6 9.5617 -6.9472 1.7337 22 1 9.3841 -7.0264 0.6713 23 6 10.7635 -7.3873 2.2711 24 7 10.9798 -7.2914 3.5658 25 14 12.0733 -8.1171 1.1570 26 1 12.9707 -7.0368 0.6744 27 1 12.8666 -9.1178 1.9151 28 1 11.4240 -8.7769 -0.0041 29 6 5.4911 -4.5079 3.0555 30 6 2.1982 -1.1972 -0.0080 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1325 0.0004 35 1 4.5150 2.8168 -1.0289 36 1 3.7453 3.2619 0.5131 37 1 5.2868 2.3719 0.5120 38 1 5.3517 0.0000 -0.0024 39 1 5.2863 -2.3714 -0.5184 40 1 3.7447 -3.2613 -0.5188 41 1 5.1065 -5.8017 0.4654 42 1 5.6365 -4.3328 -0.3838 43 1 7.8444 -4.4263 0.6870 44 1 7.4785 -6.0341 0.0034 45 1 6.6491 -6.1769 4.8110 46 1 7.6470 -4.7484 5.2415 47 1 8.7386 -7.2124 4.5063 48 1 9.5787 -5.6538 4.2687 49 1 11.8195 -7.5992 3.9415 50 1 4.9236 -5.4118 3.2771 51 1 5.2086 -3.7098 3.7419 52 1 1.6581 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036809040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:38 Heat of formation + Delta-G solvation = -10.541369 kcal Electronic energy + Delta-G solvation = -30016.641449 eV Core-core repulsion = 26173.219523 eV Total energy + Delta-G solvation = -3843.421926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.59307 -40.49025 -39.47794 -36.77547 -34.74336 -34.35234 -34.27635 -32.98457 -31.50050 -30.08695 -28.89102 -27.83298 -27.53758 -26.65547 -24.90266 -23.73395 -22.23122 -21.82186 -21.60309 -21.07929 -19.85994 -18.66191 -17.83244 -17.25969 -17.00671 -16.89853 -16.72289 -16.16624 -15.92984 -15.62428 -15.20068 -15.09444 -14.77701 -14.76143 -14.18449 -14.13044 -13.98580 -13.88124 -13.80718 -13.76373 -13.35451 -13.33094 -13.21982 -13.12036 -13.01871 -12.68136 -12.52752 -12.48106 -12.32090 -12.10930 -12.00606 -11.87347 -11.83008 -11.74232 -11.59972 -11.51101 -10.98987 -10.79520 -10.70251 -9.66527 -9.48134 -9.39646 -8.86876 -7.82471 -5.16990 0.44047 0.50585 1.46572 1.48159 1.56470 1.64689 2.01473 2.51322 2.83329 3.36492 3.44601 3.67115 3.72257 3.87023 3.87825 3.95596 3.96967 4.03176 4.22336 4.25303 4.25814 4.37224 4.41316 4.44890 4.51586 4.54492 4.61831 4.65666 4.70038 4.72201 4.73310 4.81596 4.83684 4.86390 4.86975 4.93251 5.01770 5.05876 5.08017 5.08941 5.23692 5.30262 5.38417 5.47715 5.55584 5.57461 5.64760 5.66221 5.67854 5.75383 5.76535 6.17764 6.21361 6.43637 7.09876 7.19175 7.80564 8.49702 9.29626 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.002270 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.843451 B =12332.452738 C =12666.591244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.069 4.069 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.117 3.883 13 C -0.125 4.125 14 C 0.157 3.843 15 H 0.024 0.976 16 C -0.109 4.109 17 H 0.060 0.940 18 C -0.123 4.123 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.227 4.227 22 H 0.090 0.910 23 C -0.073 4.073 24 N -0.956 5.956 25 Si 0.975 3.025 26 H -0.289 1.289 27 H -0.300 1.300 28 H -0.265 1.265 29 C 0.136 3.864 30 C -0.128 4.128 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.004 0.996 48 H 0.015 0.985 49 H 0.244 0.756 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.442 14.320 -10.844 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.151 4.151 7 C -0.069 4.069 8 C -0.136 4.136 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.343 5.343 12 C -0.006 4.006 13 C -0.164 4.164 14 C 0.050 3.950 15 H 0.042 0.958 16 C -0.129 4.129 17 H 0.078 0.922 18 C -0.162 4.162 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.356 4.356 22 H 0.108 0.892 23 C -0.266 4.266 24 N -0.606 5.606 25 Si 0.804 3.196 26 H -0.216 1.216 27 H -0.227 1.227 28 H -0.189 1.189 29 C 0.013 3.987 30 C -0.146 4.146 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.022 0.978 48 H 0.034 0.966 49 H 0.053 0.947 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.447 14.544 -10.373 27.152 hybrid contribution 1.617 -0.750 0.192 1.793 sum -18.830 13.795 -10.182 25.466 Atomic orbital electron populations 1.20808 0.89475 1.03303 1.03138 1.20211 0.97421 0.92920 0.98777 1.21154 0.93544 0.98298 1.02255 1.20181 0.94426 0.95878 0.98988 1.20811 0.99731 0.93246 1.03072 1.21044 0.99841 0.92165 1.02048 1.19474 0.93982 0.94059 0.99415 1.20796 1.03448 0.96295 0.93099 1.21091 0.76827 0.79672 0.92153 1.90681 1.52960 1.54577 1.47776 1.48414 1.55574 1.22796 1.07472 1.21985 0.93309 0.96321 0.88947 1.21850 0.96570 1.00572 0.97378 1.20893 0.87016 0.92769 0.94352 0.95844 1.22471 0.95765 0.97835 0.96826 0.92182 1.22591 0.97753 0.99140 0.96695 1.21291 0.93791 0.95705 0.83496 1.44502 1.14558 1.71361 1.03611 1.19426 0.93906 1.31411 0.90852 0.89236 1.25651 1.00458 1.03089 0.97358 1.70170 1.24835 1.54019 1.11539 0.85118 0.79081 0.77465 0.77953 1.21595 1.22650 1.18914 1.21415 0.93788 1.00618 0.82852 1.21055 0.93414 0.98391 1.01690 0.89935 0.91349 0.90800 0.84565 0.89993 0.90630 0.91813 0.86304 0.86082 0.85079 0.89444 0.86555 0.92623 0.90600 0.90375 0.90753 0.97786 0.96642 0.94677 0.89960 0.90048 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.09 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.56 9.36 22.27 0.21 -2.35 16 4 C -0.09 -1.94 5.88 -19.87 -0.12 -2.05 16 5 C -0.11 -1.69 10.01 71.24 0.71 -0.98 16 6 C -0.13 -3.00 9.36 22.27 0.21 -2.79 16 7 C -0.07 -1.51 4.37 -19.87 -0.09 -1.60 16 8 C -0.10 -1.78 4.16 29.10 0.12 -1.66 16 9 C 0.51 13.52 7.66 87.66 0.67 14.19 16 10 O -0.58 -20.22 15.39 -3.03 -0.05 -20.27 16 11 N -0.61 -15.52 2.99 -817.74 -2.45 -17.97 16 12 C 0.12 2.43 6.22 86.71 0.54 2.97 16 13 C -0.12 -3.76 5.46 30.46 0.17 -3.59 16 14 C 0.16 5.95 2.59 45.51 0.12 6.07 16 15 H 0.02 0.91 7.92 -2.39 -0.02 0.89 16 16 C -0.11 -3.77 2.85 -9.96 -0.03 -3.80 16 17 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 18 C -0.12 -4.57 6.54 31.63 0.21 -4.37 16 19 C 0.18 9.09 5.45 86.84 0.47 9.56 16 20 N -0.62 -30.76 3.35 -669.91 -2.24 -33.01 16 21 C -0.23 -12.28 9.88 84.03 0.83 -11.45 16 22 H 0.09 4.51 7.25 -2.91 -0.02 4.49 16 23 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 24 N -0.96 -58.03 10.44 21.65 0.23 -57.80 16 25 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.14 3.92 5.96 85.91 0.51 4.43 16 30 C -0.13 -2.65 9.36 22.27 0.21 -2.44 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.14 1.95 8.06 -2.90 -0.02 1.93 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 37 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 38 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.12 1.79 7.49 -2.38 -0.02 1.77 16 40 H 0.13 1.61 7.93 -2.39 -0.02 1.59 16 41 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.12 1.62 5.83 -2.39 -0.01 1.61 16 43 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 44 H 0.08 2.28 7.66 -2.39 -0.02 2.26 16 45 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 46 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.00 0.22 7.77 -2.39 -0.02 0.20 16 48 H 0.02 0.87 7.21 -2.39 -0.02 0.85 16 49 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.08 2.16 8.08 -2.39 -0.02 2.15 16 51 H 0.08 2.52 6.99 -2.39 -0.02 2.51 16 52 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.01 405.37 4.21 -69.80 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.89 Total: 18.00 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.81 Total: -6.16 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -4.46 Total: -108.78 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.01 4.21 -69.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.261 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds